TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145329.2 + phase: 0 /pseudo
         (246 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922226                                                              108  2e-24
AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain ...    91  6e-19
CA937893 similar to GP|20805072|dbj retrovirus-related pol polyp...    54  7e-08
TC205761 similar to UP|Q6NPF9 (Q6NPF9) At1g76760, partial (62%)        31  0.45
TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich p...    29  1.7
TC229235 similar to UP|Q9LHR6 (Q9LHR6) Arabidopsis thaliana geno...    28  5.0
TC230168                                                               28  5.0
TC205965                                                               27  6.5

>CF922226 
          Length = 667

 Score =  108 bits (270), Expect = 2e-24
 Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 11/148 (7%)
 Frame = -3

Query: 93  MTKSLAHRQFLK*QLYLFRMVESKAIIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAI 152
           MTKSL +R + K  LY F+M E +++ EQL  FNK++ DLENI+V ++DED+A+LL C +
Sbjct: 665 MTKSLVNRLYXKQSLYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCYL 486

Query: 153 PKSFESFKDTMLYGKEGTVILEEVQAALRTKKLTKSKDLRVHEHGEGLSVL--------- 203
           PKS+  FK+T+L+G++ +V L+EVQ AL +K+L + K+ +    GEGL+           
Sbjct: 485 PKSYSHFKETLLFGRD-SVSLDEVQTALNSKELNERKEKKSSASGEGLTARGKTFKKDSE 309

Query: 204 --RGNDGGRGNRRKSGNKSRSECFNCHK 229
             +        +   GN  +  C++C K
Sbjct: 308 FDKKKQKPENQKNGEGNIFKIRCYHCKK 225


>AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain
           dehydrogenase/reductase family-like protein {Arabidopsis
           thaliana}, partial (9%)
          Length = 428

 Score = 90.5 bits (223), Expect = 6e-19
 Identities = 48/91 (52%), Positives = 65/91 (70%), Gaps = 1/91 (1%)
 Frame = +3

Query: 2   MGS-KWDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGLLPVTMSQVEKTDMVDKVR 60
           MGS K+++EKFTG NDFGL  +KM A+L+QQ   +AL GE  L   M+  +K  ++ K  
Sbjct: 75  MGSAKYEVEKFTGQNDFGLC*LKMRALLVQQGLVEALDGEIKLEKMMADGDKKALLQKAY 254

Query: 61  SAIVLCLGDKVLREVAKEPTAASIWAKLESL 91
           +AI+L LGDKVLR+V+KE TA  +W+KLE L
Sbjct: 255 NAIILSLGDKVLRQVSKETTAVGVWSKLEVL 347


>CA937893 similar to GP|20805072|dbj retrovirus-related pol polyprotein from
           transposon TNT 1-94-like, partial (7%)
          Length = 412

 Score = 53.9 bits (128), Expect = 7e-08
 Identities = 31/106 (29%), Positives = 57/106 (53%)
 Frame = -2

Query: 3   GSKWDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGLLPVTMSQVEKTDMVDKVRSA 62
           G+K+++ KF G  +F LW+ +++ +L  Q   K L+           ++  ++ ++  + 
Sbjct: 315 GAKFEVGKFDGTGNFRLWQKRVKDLLA*QGLLKVLRDSK--SNNTEALDWEEL*ERTATT 142

Query: 63  IVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLY 108
           I LCL D+ L  + +      +W KLES YM KSL ++ +L  +LY
Sbjct: 141 IRLCLVDEFLYHMMELAFPGEVWKKLESQYMLKSLTNKLYLMQKLY 4


>TC205761 similar to UP|Q6NPF9 (Q6NPF9) At1g76760, partial (62%)
          Length = 1023

 Score = 31.2 bits (69), Expect = 0.45
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 202 VLRGNDGGRGNRRKSGNKSRSECFNC 227
           V R N GGRGN  + GN++R  C  C
Sbjct: 228 VQRSNRGGRGNGDRHGNETRRTCLFC 151


>TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich protein 2,
           partial (45%)
          Length = 995

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 196 HGEGLSVLRGNDGGRGNRRKSGNKSRSECFNC 227
           HG+G     G D GR  RR  G      CFNC
Sbjct: 470 HGQGGG---GGDDGRNRRRGGGGGGGGGCFNC 556


>TC229235 similar to UP|Q9LHR6 (Q9LHR6) Arabidopsis thaliana genomic DNA,
           chromosome 5, TAC clone:K3D20, partial (78%)
          Length = 1379

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 27/45 (59%)
 Frame = +1

Query: 39  GEGLLPVTMSQVEKTDMVDKVRSAIVLCLGDKVLREVAKEPTAAS 83
           GEG+L +   + ++ D+  K+++ +V   GDK    +A+EP A S
Sbjct: 178 GEGILFIGNLRGKREDVFAKLQNQLVEVTGDKYNLFMAEEPNADS 312


>TC230168 
          Length = 863

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 21  KVKMEAVLIQQKCEKALKGEGLLPVTMSQVEKTDMVDKVRSA 62
           ++   AV+IQ  C+++LKG   L  T   ++ T+ +    +A
Sbjct: 441 RMSQNAVMIQALCQRSLKGSVALKYTSYPIQATEEITVTANA 316


>TC205965 
          Length = 1409

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 207 DGGRGNRRKSGNKSRSECFNCH 228
           DG RGN    GNKS +    CH
Sbjct: 389 DGTRGNNSSDGNKSDNNSEKCH 454


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,966,743
Number of Sequences: 63676
Number of extensions: 90907
Number of successful extensions: 513
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of query: 246
length of database: 12,639,632
effective HSP length: 95
effective length of query: 151
effective length of database: 6,590,412
effective search space: 995152212
effective search space used: 995152212
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)