BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145329.1 - phase: 0
(236 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BU763819 similar to GP|15081707|gb| At1g02660/T14P4_9 {Arabidops... 119 9e-28
TC210587 60 9e-10
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 32 0.25
TC209338 weakly similar to UP|Q8W586 (Q8W586) AT4g21800/F17L22_2... 30 0.96
BQ253920 30 0.96
AI938684 30 1.2
BE555145 PIR|T48395|T48 GT2-like protein - Arabidopsis thaliana,... 30 1.2
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 30 1.2
TC225739 homologue to UP|Q41124 (Q41124) Chloroplast RNA binding... 29 1.6
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 29 1.6
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 29 1.6
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 28 2.8
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 28 2.8
TC228949 similar to UP|Q945N1 (Q945N1) AT5g50310/MXI22_1, partia... 28 2.8
TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 28 3.6
TC223100 similar to UP|GR33_ARATH (Q9C8E7) Glutamate receptor 3.... 28 3.6
TC207234 weakly similar to UP|Q9FH01 (Q9FH01) Similarity to CHP-... 28 3.6
TC217791 weakly similar to UP|Q9JJ12 (Q9JJ12) Charged amino acid... 28 3.6
BE822052 similar to GP|4557063|gb|A expressed protein {Arabidops... 28 3.6
TC212086 similar to UP|Q6RX29 (Q6RX29) RPP13-like protein (Fragm... 28 3.6
>BU763819 similar to GP|15081707|gb| At1g02660/T14P4_9 {Arabidopsis
thaliana}, partial (9%)
Length = 448
Score = 119 bits (299), Expect = 9e-28
Identities = 71/125 (56%), Positives = 80/125 (63%), Gaps = 8/125 (6%)
Frame = +2
Query: 116 ECDVCRVDEEVDDENEDEEIRFDRESFSRMLRRVTLVEARMYAHMSHLGNLAYSIPNIKQ 175
ECD C +E EE +FDR SFSRMLRRV+L E+R+YA MSHLGNLAY IP IK
Sbjct: 53 ECDAC---------DEVEEAQFDRGSFSRMLRRVSLAESRLYAQMSHLGNLAYDIPRIKP 205
Query: 176 GNLLKRCGLRFVTSSIEKKELAASIKKEETNGK--------DAGERKVEKNGELKTSASN 227
G LLK GLRFVTSSIEKKELA + E+ K + ERK KNGE K SA+
Sbjct: 206 GKLLKHYGLRFVTSSIEKKELAVAATAEKDPQKVQTDEKVDEKEERKDPKNGEYKISATA 385
Query: 228 ACEIA 232
A IA
Sbjct: 386 AYNIA 400
>TC210587
Length = 700
Score = 60.1 bits (144), Expect = 9e-10
Identities = 28/70 (40%), Positives = 47/70 (67%)
Frame = +3
Query: 132 DEEIRFDRESFSRMLRRVTLVEARMYAHMSHLGNLAYSIPNIKQGNLLKRCGLRFVTSSI 191
++E+ +DR+SFS L +V + ++Y+ ++ L N+AY IP IK +L + L+F+TSS+
Sbjct: 3 EQEVTYDRDSFSSFLVQVPWSDTKLYSQLAFLCNMAYVIPQIKAKDLRRYYSLQFITSSL 182
Query: 192 EKKELAASIK 201
EKK A +K
Sbjct: 183 EKKAEVAKLK 212
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 32.0 bits (71), Expect = 0.25
Identities = 21/65 (32%), Positives = 30/65 (45%)
Frame = +1
Query: 70 NDAFTAENADRTVKEGDGQNGNWVFKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDE 129
++ F+ E D D NG S E + GD++GDE D ++E +DE
Sbjct: 433 DEEFSGEEGDEGGDPEDEANGE--------GSDDGDEDDDGDDNGDEEDDDDGEDEEEDE 588
Query: 130 NEDEE 134
EDEE
Sbjct: 589 EEDEE 603
>TC209338 weakly similar to UP|Q8W586 (Q8W586) AT4g21800/F17L22_260, partial
(28%)
Length = 544
Score = 30.0 bits (66), Expect = 0.96
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = +3
Query: 106 EQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRESF 142
++E D+D D+ + +E+ DE+EDEE+ DR F
Sbjct: 306 DEEMDDDDDDDLGIYTEEEDAIDEDEDEEV--DRFGF 410
>BQ253920
Length = 423
Score = 30.0 bits (66), Expect = 0.96
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = -1
Query: 105 GEQESGDNDG-----DECDVCRVDEEVDDENEDEEIRFDRESFSRML 146
GE E D G D V VDEEVD E E ++ DR R +
Sbjct: 330 GEAEDDDEFGEVSLVDVVGVLEVDEEVDVEEEHDDAHHDRHDHQRQV 190
>AI938684
Length = 417
Score = 29.6 bits (65), Expect = 1.2
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Frame = -2
Query: 12 PGIVPLITSISATTTTSRANDHVHVHQ------------SHVTTVRRSNKSSMFSRFIGS 59
P I+P S N+H H+HQ S V T+RR NK + R IG
Sbjct: 233 PNILPPRRRRSVNILLQIGNEHFHLHQLRPQLL*FHYHFSDVVTLRRQNK--LVERKIGL 60
Query: 60 SARNNCLAAVNDAFTAEN 77
S NC + F EN
Sbjct: 59 S---NCNNNIGGDFWGEN 15
>BE555145 PIR|T48395|T48 GT2-like protein - Arabidopsis thaliana, partial
(3%)
Length = 392
Score = 29.6 bits (65), Expect = 1.2
Identities = 21/97 (21%), Positives = 42/97 (42%)
Frame = +3
Query: 2 VTLCLLQSGIPGIVPLITSISATTTTSRANDHVHVHQSHVTTVRRSNKSSMFSRFIGSSA 61
VT Q I +V +++ +ATTT S+ N + Q H ++ +N + + + +
Sbjct: 69 VTKPRCQKPILAVVAFVSTQAATTTPSQTNQEMFQSQKHCDSLSLTNSTDLDTSSSDDND 248
Query: 62 RNNCLAAVNDAFTAENADRTVKEGDGQNGNWVFKVFD 98
+N+ + D + E + V +W K+ D
Sbjct: 249 QNSTGGGLKDNDSMEKRRKRV-----SGRSWKVKIKD 344
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 105 GEQESGDNDGDECDVCRVDEEVDDENEDEE 134
G +E+G+ D DE + D++ DD+++DEE
Sbjct: 469 GAEENGEEDEDEDGDDQDDDDEDDDDDDEE 380
>TC225739 homologue to UP|Q41124 (Q41124) Chloroplast RNA binding protein
precursor, partial (85%)
Length = 1436
Score = 29.3 bits (64), Expect = 1.6
Identities = 36/155 (23%), Positives = 62/155 (39%), Gaps = 8/155 (5%)
Frame = +3
Query: 37 HQSHVTTVRRSNKSSMFSRFIGSSARNNCLAAVNDAFTAENADRTVKEGDGQNGNWVFKV 96
H +++ + +S+FS I S CL + + + TV G G+ + +
Sbjct: 159 HNNNMAATAAAGIASLFSSSINSV---KCLRSSKNCSIIDPLITTVPSNRGMFGSHLVEP 329
Query: 97 FDLNS--VWKGE------QESGDNDGDECDVCRVDEEVDDENEDEEIRFDRESFSRMLRR 148
+NS +W QE D+ V+EE +ENE E + +++S S
Sbjct: 330 LSINSHKLWGPRISAAVAQEEAVVVVDDDGAGLVEEEKVEENEGEAVA-EQDSDSS---- 494
Query: 149 VTLVEARMYAHMSHLGNLAYSIPNIKQGNLLKRCG 183
A + GNL YS+ + K L++ G
Sbjct: 495 ---------ATKLYFGNLPYSVDSAKLAGLIQDYG 572
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 29.3 bits (64), Expect = 1.6
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 105 GEQESGDNDGDECDVCRVDEEVDDENEDEE 134
G +E+G+ D DE + D+E DD+++D+E
Sbjct: 436 GAEENGEEDEDEDGDDQDDDEDDDDDDDDE 347
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 107 QESGDNDGDECDVCRVDEEVDDENEDE 133
+E D DGD+ D D++ DD+ EDE
Sbjct: 418 EEDEDEDGDDQDDDEDDDDDDDDEEDE 338
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 29.3 bits (64), Expect = 1.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 106 EQESGDNDGDECDVCRVDEEVDDENEDEE 134
+ + D+D DE D D++ +DE+EDEE
Sbjct: 440 DDDDDDDDNDEDDGDEDDDDEEDEDEDEE 526
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 28.5 bits (62), Expect = 2.8
Identities = 19/52 (36%), Positives = 23/52 (43%)
Frame = +2
Query: 83 KEGDGQNGNWVFKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDENEDEE 134
+EGD Q G GE + DND D D+ DDE+EDEE
Sbjct: 446 EEGDVQRG--------------GEPDDDDNDSD-------DDSDDDEDEDEE 538
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 22/36 (60%)
Frame = +1
Query: 105 GEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
G+ + +++ +E DV R E DD+N+D++ D E
Sbjct: 271 GDDDDDEDEEEESDVQRGGEPDDDDNDDDDEDEDEE 378
>TC228949 similar to UP|Q945N1 (Q945N1) AT5g50310/MXI22_1, partial (27%)
Length = 1134
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/30 (46%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Frame = +3
Query: 106 EQESGDNDGDECDVCRV-DEEVDDENEDEE 134
++E+ D+D DE D + DE+ DDE E+EE
Sbjct: 174 DEENEDDDEDESDGDSLTDEDEDDEEEEEE 263
>TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (63%)
Length = 1144
Score = 28.1 bits (61), Expect = 3.6
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = +3
Query: 104 KGEQESGDNDGDECDVCRVDEEVDDENEDEE 134
K +E D+D D+ D DEE++D + D +
Sbjct: 537 KDNEEDSDDDSDDDDFGSSDEEMEDADSDSD 629
>TC223100 similar to UP|GR33_ARATH (Q9C8E7) Glutamate receptor 3.3 precursor
(Ligand-gated ion channel 3.3), partial (25%)
Length = 702
Score = 28.1 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 1 MVTLCLLQSGIPGIVPLITSISATTTTSRANDHVHVHQSHVTTVRRS 47
MVT+C L + L + I T TSR V VH V V+++
Sbjct: 615 MVTICCLGGPLKSSFSLCSKIQTTAPTSRKKTAVTVHIIGVNGVKKA 475
>TC207234 weakly similar to UP|Q9FH01 (Q9FH01) Similarity to CHP-rich zinc
finger protein, partial (4%)
Length = 449
Score = 28.1 bits (61), Expect = 3.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 104 KGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRESFSRMLRR 148
K + D+DGDE ++ VDD+++DE ++E + RR
Sbjct: 190 KDDHSDEDDDGDEDYDDEEEDYVDDDDDDERPCVEKEKRCTLRRR 324
>TC217791 weakly similar to UP|Q9JJ12 (Q9JJ12) Charged amino acid rich
leucine zipper factor-1, partial (6%)
Length = 1070
Score = 28.1 bits (61), Expect = 3.6
Identities = 25/112 (22%), Positives = 43/112 (38%)
Frame = +3
Query: 111 DNDGDECDVCRVDEEVDDENEDEEIRFDRESFSRMLRRVTLVEARMYAHMSHLGNLAYSI 170
D+DGD+ EV DE +D F + + ++ + A S+
Sbjct: 378 DDDGDDQMTDLGPNEVTDEEDDGGSGDSENEFYKQVEQLRAAKLAAKAETYSRNTSVSSL 557
Query: 171 PNIKQGNLLKRCGLRFVTSSIEKKELAASIKKEETNGKDAGERKVEKNGELK 222
P I +G R ++S IEK + T ++ ++ KN +LK
Sbjct: 558 PEIVEGK-------RHISSQIEK-------NRGLTRNRNKAKKNPRKNYKLK 671
>BE822052 similar to GP|4557063|gb|A expressed protein {Arabidopsis
thaliana}, partial (28%)
Length = 668
Score = 28.1 bits (61), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = -1
Query: 106 EQESGDNDGDECDVCRVDEEVDDENEDEEI 135
E + DNDGD+ ++E +DE ++EE+
Sbjct: 356 EDDDDDNDGDDDGEDEDEKEGEDEEDEEEV 267
>TC212086 similar to UP|Q6RX29 (Q6RX29) RPP13-like protein (Fragment),
partial (5%)
Length = 571
Score = 28.1 bits (61), Expect = 3.6
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +1
Query: 123 DEEVDDENEDEEIRFDRESFSRML 146
D E+D+ N + +IRFD S+S L
Sbjct: 226 DTEIDESNGEADIRFDARSYSSRL 297
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,867,335
Number of Sequences: 63676
Number of extensions: 105042
Number of successful extensions: 833
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of query: 236
length of database: 12,639,632
effective HSP length: 94
effective length of query: 142
effective length of database: 6,654,088
effective search space: 944880496
effective search space used: 944880496
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC145329.1