BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145220.5 + phase: 0 /pseudo
(141 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like,... 33 0.034
TC231552 similar to UP|Q7YU56 (Q7YU56) RE54443p, partial (3%) 31 0.22
CA939026 29 0.64
TC231827 similar to UP|Q8LFZ9 (Q8LFZ9) Sucrase-like protein, par... 29 0.64
TC218398 29 0.84
TC220462 similar to UP|Q9M2C3 (Q9M2C3) Nodulin-like protein, par... 28 1.4
TC218963 28 1.9
TC222617 weakly similar to UP|Q9FK30 (Q9FK30) Gb|AAD50008.1, par... 28 1.9
BM271359 27 2.4
TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pr... 27 3.2
TC216103 similar to GB|AAK84220.1|15100049|AF401297 transcriptio... 27 3.2
TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ... 27 4.2
TC210003 27 4.2
TC207343 similar to GB|AAN31116.1|23506209|AY149962 At3g06130/F2... 27 4.2
BQ253857 26 5.5
TC231260 similar to UP|Q9FIK0 (Q9FIK0) Pyrophosphate-fructose-6-... 26 5.5
TC212402 weakly similar to GB|AAO64859.1|29028960|BT005924 At4g3... 26 5.5
AW760678 similar to GP|13383259|db CPD photolyase {Cucumis sativ... 26 5.5
TC211943 26 5.5
TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial ... 26 5.5
>TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like, partial
(57%)
Length = 926
Score = 33.5 bits (75), Expect = 0.034
Identities = 20/55 (36%), Positives = 27/55 (48%)
Frame = +1
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQ 55
PL Q + + Q+ QQQ QQ+QQQQ++ + M L P LL GQ
Sbjct: 463 PLEDDQGEEEMQVQQQQQQQQQQQQQQQQQQSQGLGEQVSMPMYNLPPNLLHNGQ 627
>TC231552 similar to UP|Q7YU56 (Q7YU56) RE54443p, partial (3%)
Length = 697
Score = 30.8 bits (68), Expect = 0.22
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Frame = +3
Query: 16 QRMQQQPPAQQRQQQQARPTFP--LIPMLY-----AKLLPTLLLKGQAST*SIASQVPF 67
QR QQQ QQRQQQQ + P L+ LY A L +L S S S PF
Sbjct: 18 QRQQQQRQRQQRQQQQQQQQQPSSLLQQLYYNAQFASLQSPSMLSSSPSFSSSVSPAPF 194
>CA939026
Length = 426
Score = 29.3 bits (64), Expect = 0.64
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 7 PQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLI 39
P +P + Q QQ P QQ+QQQQ + PL+
Sbjct: 189 PPLPQDQQQQLQQQLSPPQQQQQQQQQQQQPLV 287
>TC231827 similar to UP|Q8LFZ9 (Q8LFZ9) Sucrase-like protein, partial (8%)
Length = 436
Score = 29.3 bits (64), Expect = 0.64
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKL 46
P G+ + ++AV ++ P QQR+QQQ + +P P A L
Sbjct: 218 PIGEFILLISAVCSSYRRWQPTQQRRQQQEQHKYPPAPSCQAML 87
>TC218398
Length = 1166
Score = 28.9 bits (63), Expect = 0.84
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = +1
Query: 92 CKKTHRPRKIDL*E*RPSCRRQSSSESR 119
C + HRP I +* *R C+RQ+S + R
Sbjct: 973 CWREHRPSSISI*G*RRVCQRQASVQGR 1056
>TC220462 similar to UP|Q9M2C3 (Q9M2C3) Nodulin-like protein, partial (60%)
Length = 644
Score = 28.1 bits (61), Expect = 1.4
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 19/75 (25%)
Frame = -2
Query: 20 QQPPAQQRQQQQARPTFPLIPM---LYA----------KLLPTLLLKGQAST*SIASQVP 66
Q PP Q+ QQQQ+ P IP+ L A KL LL KG A++ S+ +P
Sbjct: 298 QTPPKQKSQQQQSLQASPYIPL*MTLQAMAPLHQQKRPKLRLLLLAKGLANSLSLHWCLP 119
Query: 67 ------FGPQV*FPS 75
FGP FPS
Sbjct: 118 LDLSLFFGP---FPS 83
>TC218963
Length = 1084
Score = 27.7 bits (60), Expect = 1.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPML 42
LP Q VPV +++ ++ QPP Q+R R FPL +L
Sbjct: 633 LPRRQLLVPVQDLLKSVENQPPLQRR---SLRGIFPL*TLL 520
>TC222617 weakly similar to UP|Q9FK30 (Q9FK30) Gb|AAD50008.1, partial (5%)
Length = 609
Score = 27.7 bits (60), Expect = 1.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 5 GQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFP 37
GQPQ N ++ R ++PP +RQQ P
Sbjct: 92 GQPQTTSNGLLLRRGRRPPQPRRQQPPQAAVLP 190
>BM271359
Length = 434
Score = 27.3 bits (59), Expect = 2.4
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +3
Query: 107 RPSCRRQSSSESRCCKH 123
RP C+RQ S E C KH
Sbjct: 153 RPHCKRQQSCELACAKH 203
>TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (43%)
Length = 1810
Score = 26.9 bits (58), Expect = 3.2
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 1 PLPSGQPQVPVNAV--VQRMQQQPPAQQRQQQQ 31
P PS PV Q+ QQQP QQ QQQQ
Sbjct: 824 PTPSQVTPSPVQQFSHYQQQQQQPQQQQPQQQQ 922
>TC216103 similar to GB|AAK84220.1|15100049|AF401297 transcription factor
bZIP29 {Arabidopsis thaliana;} , partial (34%)
Length = 1336
Score = 26.9 bits (58), Expect = 3.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Frame = +1
Query: 7 PQVPVNAVVQRMQQQPPA--------QQRQQQQ 31
PQ VN ++ + QQQPP QQ+QQQQ
Sbjct: 925 PQHSVNPLMFQQQQQPPTASQQNIHLQQQQQQQ 1023
>TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
(Corresponding sequence ZK643.8), partial (7%)
Length = 762
Score = 26.6 bits (57), Expect = 4.2
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 7 PQVPVNAVVQRMQQQPPAQQRQQQQARP 34
PQ PV + QQQPP QQ QQ +P
Sbjct: 153 PQPPV-----QQQQQPPQQQLQQPPQQP 221
>TC210003
Length = 896
Score = 26.6 bits (57), Expect = 4.2
Identities = 17/64 (26%), Positives = 32/64 (49%), Gaps = 5/64 (7%)
Frame = -3
Query: 5 GQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLL-----LKGQAST* 59
G P++ + ++ QP + RQQ + R + PL+ + ++P + LK Q S
Sbjct: 390 GMPRMTTSTKKLKLL*QP*TRTRQQYKTRASIPLLSTMLLLIIPLIA*MKCGLKCQESGL 211
Query: 60 SIAS 63
+IA+
Sbjct: 210 NIAN 199
>TC207343 similar to GB|AAN31116.1|23506209|AY149962 At3g06130/F28L1_7
{Arabidopsis thaliana;} , partial (14%)
Length = 540
Score = 26.6 bits (57), Expect = 4.2
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = +1
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQ--------QQARPTFPLIPMLYAKLLPTL 50
P P P + Q+ QQQ QQ+QQ Q+A PM+YA+ P +
Sbjct: 13 PEAMPGNPFHQQQQQQQQQQQLQQQQQYMAAMMNQQRAIGNDRFQPMMYARPPPAV 180
Score = 26.2 bits (56), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (56%)
Frame = +1
Query: 4 SGQPQVPVNAVVQRMQQQPPAQQRQQQQ 31
+G +P N Q+ QQQ QQ QQQQ
Sbjct: 7 AGPEAMPGNPFHQQQQQQQQQQQLQQQQ 90
>BQ253857
Length = 422
Score = 26.2 bits (56), Expect = 5.5
Identities = 15/39 (38%), Positives = 20/39 (50%)
Frame = +3
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIP 40
+ S +P+ A + QQQ QQ+QQQ FPL P
Sbjct: 288 MASTKPKPKPKAEQLQQQQQLQQQQQQQQPQLNLFPLHP 404
>TC231260 similar to UP|Q9FIK0 (Q9FIK0) Pyrophosphate-fructose-6-phosphate
1-phosphotransferase-like protein (AT5g47810/MCA23_13),
partial (48%)
Length = 997
Score = 26.2 bits (56), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 92 CKKTHRPRKIDL*E*RPSCRRQSSSESR 119
C + HRPR++D + RP C ++ + R
Sbjct: 44 CSERHRPREVDGSKHRPHCSSCNAQQPR 127
>TC212402 weakly similar to GB|AAO64859.1|29028960|BT005924 At4g33330
{Arabidopsis thaliana;} , partial (37%)
Length = 1146
Score = 26.2 bits (56), Expect = 5.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 16 QRMQQQPPAQQRQQQQARPTFP 37
Q+ QQQ QQ+Q Q RPT P
Sbjct: 79 QQQQQQQQQQQQQLHQIRPTPP 144
>AW760678 similar to GP|13383259|db CPD photolyase {Cucumis sativus}, partial
(24%)
Length = 425
Score = 26.2 bits (56), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 107 RPSCRRQSSSESRCC 121
RP+C RQ S+ RCC
Sbjct: 86 RPTCDRQLGSDPRCC 130
>TC211943
Length = 527
Score = 26.2 bits (56), Expect = 5.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 84 RMLRVEVHCKKTHRPRKI 101
R++RVEV C++ H RK+
Sbjct: 281 RVMRVEVECERIHERRKV 228
>TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial (12%)
Length = 440
Score = 26.2 bits (56), Expect = 5.5
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +3
Query: 16 QRMQQQPPAQQRQQQQARP 34
Q+ QQQ QQ+QQQQ +P
Sbjct: 21 QQQQQQQQQQQQQQQQQQP 77
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.352 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,933,936
Number of Sequences: 63676
Number of extensions: 100581
Number of successful extensions: 1139
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of query: 141
length of database: 12,639,632
effective HSP length: 88
effective length of query: 53
effective length of database: 7,036,144
effective search space: 372915632
effective search space used: 372915632
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC145220.5