BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145220.4 - phase: 0 /pseudo
(1391 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CF922488 329 5e-90
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 219 3e-71
NP595172 polyprotein [Glycine max] 227 2e-59
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 218 1e-56
NP334778 reverse transcriptase [Glycine max] 218 1e-56
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 204 2e-52
NP395547 reverse transcriptase [Glycine max] 186 5e-47
BQ628592 106 6e-47
NP395548 reverse transcriptase [Glycine max] 178 2e-44
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 169 8e-42
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 147 3e-35
AW184779 114 4e-29
BI498328 123 5e-28
BG839293 117 5e-26
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 66 1e-15
AW570005 67 7e-11
BE802896 66 1e-10
BI317507 63 1e-09
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 60 5e-09
BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] -... 60 9e-09
>CF922488
Length = 741
Score = 329 bits (844), Expect = 5e-90
Identities = 165/246 (67%), Positives = 192/246 (77%)
Frame = +3
Query: 670 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSP 729
V K+DGKV MCVD+RDLN ASPKD FPLPHI++LVDNT FSFMDGFSGYNQIK++P
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 730 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 789
ED EKT+FIT WGTFCYK M FGL N GATYQR M LF DM+HKE+EVY+DDMIVKS
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 790 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 849
EE+H+ L K+F RLRKY+LRLNP KC F V+S KLL FI S +GIEVD +KV+ I EM
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 850 APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLL 909
P TEKQV+GFLGRLNYI RFIS + ATC P+F LL KNQ + W+ +C AF+ IK L+
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 910 KPPILV 915
P +LV
Sbjct: 723 NPHVLV 740
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 219 bits (559), Expect(2) = 3e-71
Identities = 105/207 (50%), Positives = 144/207 (68%)
Frame = +2
Query: 1136 IEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPR 1195
++ AID +K L +YGDSALVI+Q++GE ET NLIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 1196 DENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIENVIDQTGENVVDYKPWYY 1255
+ENQMADALATL SMF++ D+P I+ + RP+H +E D KPWY+
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLVEEERDG--------KPWYF 541
Query: 1256 DIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 1315
DIK+++ S+EYP AS DK+ RRLA+ F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 1316 DVHDGTFGTHATGHTMSRKLLRAGYYW 1342
+VH+G+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 69.3 bits (168), Expect(2) = 3e-71
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +1
Query: 1080 DPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEAC 1132
+ KW + FD A N G G+GA++VSP IPFT R+ F+CTNNMAEYEAC
Sbjct: 37 EDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEAC 195
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 227 bits (579), Expect = 2e-59
Identities = 149/465 (32%), Positives = 235/465 (50%), Gaps = 1/465 (0%)
Frame = +1
Query: 580 LEEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMA 639
L + ++ LL Y +FA P + +H IP K PV+ + R
Sbjct: 1660 LPTNIDPELAILLHTYAQVFAVPASLPPQREQ---DHAIPLKQGSGPVKVRPYRYPHTQK 1830
Query: 640 LKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPH 699
+I+ +Q+ + G + P + I+ V KKDG R C D+R LN + KD+FP+P
Sbjct: 1831 DQIEKMIQEMLVQGIIQPSNSP-FSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPT 2007
Query: 700 IDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGAT 759
+D L+D + FS +D SGY+QI + PEDREKT+F T G + + VMPFGL NA AT
Sbjct: 2008 VDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPAT 2187
Query: 760 YQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 819
+Q M +F + K V V+ DD+++ S + H+++L + + L++++L +KC+FG
Sbjct: 2188 FQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFG 2367
Query: 820 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCG 879
LG VS G+ ++ KV+A+ + P P KQ+RGFLG Y RFI G
Sbjct: 2368 DTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAG 2547
Query: 880 PIFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLG 939
P+ LL+K+ +WN+E + AF +K + + P+L P +P I+ +G VLG
Sbjct: 2548 PLTDLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 2724
Query: 940 QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 999
Q H I Y SKK + + + A+ A + RHYL+ + + +
Sbjct: 2725 QNG------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRS 2886
Query: 1000 IKYIFEKAAVTGKNARWQMLLSEYDIVFKTQ-KAIKGSILADHLA 1043
+K + +++ T + W YD FK + K K + AD L+
Sbjct: 2887 LKSLMDQSLQTPEQQAWLHKFLGYD--FKIEYKPGKDNQAADALS 3015
Score = 44.7 bits (104), Expect = 3e-04
Identities = 70/294 (23%), Positives = 118/294 (39%), Gaps = 2/294 (0%)
Frame = +1
Query: 1094 NAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDS 1153
+A G G+GAV+ GH I + ++ L + Y + I EA+ + +H + G+
Sbjct: 2689 DASGIGVGAVL-GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS-KFRHY-LLGNK 2859
Query: 1154 ALVINQIKGEWETHHANLIPYRDYA--RRLLTYFTKVELHHIPRDENQMADALATLSSMF 1211
++ + +L A + L Y K+E + P +NQ ADAL S MF
Sbjct: 2860 FIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIE--YKPGKDNQAADAL---SRMF 3024
Query: 1212 RVNHWNDVPIIKVQRLERPSHVFAIENVIDQTGENVVDYKPWYYDIKQFLLSREYPPGAS 1271
+ W++ I ++ L +I +KQ L Y GA
Sbjct: 3025 MLA-WSEPHSIFLEELRA--------RLISDP------------HLKQ--LMETYKQGAD 3135
Query: 1272 KQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTM 1331
AS + + +LY + D V++ +E +++ + H G HA G T
Sbjct: 3136 ----------ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITR 3273
Query: 1332 SRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMW 1385
+ L+A +YW M+ D + +KC CQ +P L + P P +W
Sbjct: 3274 TLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVW 3429
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 218 bits (556), Expect = 1e-56
Identities = 98/178 (55%), Positives = 127/178 (71%)
Frame = +1
Query: 1214 NHWNDVPIIKVQRLERPSHVFAIENVIDQTGENVVDYKPWYYDIKQFLLSREYPPGASKQ 1273
N D+P I+ +P+H +E D KPWY+DIK++++S+EY P +
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQVEEERDG--------KPWYFDIKRYVISKEYLPEIADN 201
Query: 1274 DKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSR 1333
DK+TLRRLA+ F + G ILYKRN+DM LRCVD EA ++ +VH+G+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 1334 KLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMNG 1391
K+LRAGYYW+TME DC H RKCHKCQ +AD ++ PPH LNV+SSPWPFSMWGID+ G
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIG 555
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 218 bits (555), Expect = 1e-56
Identities = 101/143 (70%), Positives = 117/143 (81%)
Frame = +3
Query: 678 RMCVDFRDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSF 737
RMCVD+RDLN+ASPKDNFPLPHID+L+ N A +FSFMDGFSGYNQIKM+PED EKT+F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 738 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYL 797
IT WGTFCYKVM FGL N GATY R M LF DM+HKE+E YVD+MI KS EE+H+ L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 798 TKMFERLRKYKLRLNPNKCTFGV 820
+F +LRKY+LRLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 204 bits (520), Expect = 2e-52
Identities = 96/133 (72%), Positives = 113/133 (84%)
Frame = +2
Query: 713 FSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMI 772
FSFMDGFSGYNQI M+ ED EKT+F+T WGTF Y+VM FGL N GATYQR M LFHDM+
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 773 HKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 832
HKE+EVYVDDMI KS E +H+ L K+F RL+KY+L+LNP KCTFGV+SGKLLGFIVSQ
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 833 KGIEVDPDKVRAI 845
KGIE+DP+KV+A+
Sbjct: 362 KGIEIDPEKVKAL 400
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 186 bits (473), Expect = 5e-47
Identities = 95/252 (37%), Positives = 143/252 (56%), Gaps = 18/252 (7%)
Frame = +1
Query: 642 IKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 683
++ EV K ++AG + + WV+ + VPKK G RMC+D+
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 684 RDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGT 743
R LN+A+ KD++PLP +D ++ A+ + F+DG+SGYNQI + P+D+EKT+F P+
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 744 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 803
F Y+ MPFGL NA T+QR M +F DM+ K +EV++DD + L K+ +R
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 804 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGR 863
K L LN KC F V+ G +LG +S++GIEV +K+ I ++P P K + FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 864 LNYISRFISHMT 875
+ + RFI T
Sbjct: 721 VGFYRRFIKDFT 756
>BQ628592
Length = 423
Score = 106 bits (264), Expect(2) = 6e-47
Identities = 48/76 (63%), Positives = 58/76 (76%)
Frame = -1
Query: 885 LRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDET 944
L KNQ I+WN QEAF+ IK L P +L+PPV GRP ++Y+ + DESMGCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 945 GKKEHAIYYLSKKFTD 960
GKKE AIYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
Score = 101 bits (252), Expect(2) = 6e-47
Identities = 42/61 (68%), Positives = 55/61 (89%)
Frame = -3
Query: 965 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKNARWQMLLSEYD 1024
Y+MLE+TCC L WA+ RLR Y+++HTTWLIS+MDP+KYIFEK A+TG+ ARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 1025 I 1025
I
Sbjct: 4 I 2
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 178 bits (451), Expect = 2e-44
Identities = 90/252 (35%), Positives = 142/252 (55%), Gaps = 18/252 (7%)
Frame = +1
Query: 642 IKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 683
++ EV K ++ G + + WV+ ++ V KK+G ++C+D+
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 684 RDLNKASPKDNFPLPHIDMLVDNTAQPKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGT 743
R LN+A+ KD+FPLP +D +++ A + F+D + GYNQI + P+D+EK +F P+G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 744 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 803
F Y+ +PFGL NA T+Q M +F D++ K +EV++DD V E ++ L + +R
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 804 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGR 863
+ L LN KC F VR G +LG +S +GIEVD K+ I ++P P K +R FLG+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 864 LNYISRFISHMT 875
+ RFI T
Sbjct: 721 ARFYRRFIKDFT 756
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 169 bits (428), Expect = 8e-42
Identities = 79/155 (50%), Positives = 110/155 (70%), Gaps = 3/155 (1%)
Frame = +3
Query: 520 PLPNFEFPVYEAEDEESD---IPYEITRLLEQEKKAIQPHQEEIELINIGIEENKREIKI 576
P +FE + + EDE ++ +P E+ R++ E + + PHQEE EL+++G KRE+KI
Sbjct: 855 PSIDFEQKMNQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGSGSGKREVKI 1034
Query: 577 GAALEEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHP 636
G + +++++I LLR+Y DIFAWSY+DMPGL IV+HR+P PEC PV+QKLRR P
Sbjct: 1035 GTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRRMKP 1214
Query: 637 DMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVP 671
+ +LKIK EV+K DAGFL YP+WVANIVP+P
Sbjct: 1215 ETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPIP 1319
Score = 66.2 bits (160), Expect = 9e-11
Identities = 47/125 (37%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Frame = +1
Query: 249 PWIHDAGAVTSTLHQKLKFVKNGKLVTVHGEEAYLVSQLSSFSCIEAGSAE-GTAFQGLT 307
PWIH G V STLHQKLKFV G LV V GEE LVS SS +EA TAFQ
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 308 IEGAEPKKAGAAMASLKD-----AQRVIQEGQTAGWG---------KVIQLHENKRKEGL 353
+ + L D A+ ++ G G G +I N+ K GL
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKYGL 360
Query: 354 GFSPS 358
G+ P+
Sbjct: 361 GYKPT 375
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
(Fragment), partial (3%)
Length = 449
Score = 147 bits (371), Expect = 3e-35
Identities = 70/137 (51%), Positives = 101/137 (73%)
Frame = +1
Query: 90 SKISVLSLLLSSEAHRKTLLKVLEQAYVDHEVTEDRFGDIVGNITACNNLWFGEDELPEV 149
+++S+L LL+SSE HR L+KVL +A+V +++ + FG +V NITA N L F E+E+P
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 150 GKCHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYREIPLRRSTFLVKAFDG 209
G+ HN ALH+SV C +++ VL+D G SLNVMPKSTLD+L + L+ S+ +V+AFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 210 SRKNVLGEIDLPITVGP 226
+R+ V GEIDLP+ +GP
Sbjct: 391 TRREVRGEIDLPVQIGP 441
>AW184779
Length = 432
Score = 114 bits (284), Expect(2) = 4e-29
Identities = 49/74 (66%), Positives = 60/74 (80%)
Frame = +1
Query: 1287 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTME 1346
L +ILYKRN+DMVLLRCVD EAEQ++ +VH+G+FGTHA H M++K+LR GYYW+TME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 1347 HDCYQHARKCHKCQ 1360
DC H KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 34.3 bits (77), Expect(2) = 4e-29
Identities = 11/23 (47%), Positives = 18/23 (77%)
Frame = +2
Query: 1360 QIYADKIHVPPHALNVISSPWPF 1382
Q +AD ++ PP LNV+++PWP+
Sbjct: 224 QTFADNVNAPPIPLNVLAAPWPY 292
>BI498328
Length = 335
Score = 123 bits (309), Expect = 5e-28
Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +1
Query: 1029 TQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL-KSKDCEEPLIGEGPDPNSKWGL 1087
TQKA+KGS LAD+LA PL Y+P+ +FPDE+IM L + K E + +KW +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDI--------NKWIV 159
Query: 1088 VFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1145
FDGA NA G G+GAV+VSP IPFTAR+ F+CTNNMAEYEAC G++ AID +K
Sbjct: 160 CFDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>BG839293
Length = 781
Score = 117 bits (292), Expect = 5e-26
Identities = 53/113 (46%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Frame = +1
Query: 520 PLPNFEFPVYEAEDEESD---IPYEITRLLEQEKKAIQPHQEEIELINIGIEENKREIKI 576
PL NFE + EDE ++ +P E+ R++ E + + PHQEE EL+++GI KRE+KI
Sbjct: 391 PLINFEQETSQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGIGSGKREVKI 570
Query: 577 GAALEEGVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQ 629
G + +++++I LL++Y DIFAWSY+DMPGL IV+H++P PEC PV+Q
Sbjct: 571 GTGITAPIREELIILLKDYQDIFAWSYQDMPGLSSDIVQHQLPLNPECSPVKQ 729
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 66.2 bits (160), Expect(2) = 1e-15
Identities = 43/171 (25%), Positives = 75/171 (43%)
Frame = +1
Query: 846 REMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 905
R P ++ +R F G ++ RF+ + + P+ +L++KN W ++ ++AF +K
Sbjct: 88 RMAPTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLK 267
Query: 906 NYLLKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 965
L K P+L P + + + VL Q H I Y S+K Y
Sbjct: 268 EKLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGG------HPIAYFSEKLHSATLNY 429
Query: 966 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKNARW 1016
+K AL A + H+LV + S +KYI K+ + ++A+W
Sbjct: 430 PTYDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582
Score = 36.6 bits (83), Expect(2) = 1e-15
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 827 GFIVSQKGIEVDPDKVRAIREMPAP 851
GF+V + G+++DP+K++AI+E P P
Sbjct: 29 GFVVGRNGVQMDPEKIKAIQEWPPP 103
>AW570005
Length = 413
Score = 66.6 bits (161), Expect = 7e-11
Identities = 43/141 (30%), Positives = 62/141 (43%)
Frame = -2
Query: 849 PAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYL 908
P PRT + +RGFL + RFI A P+ LL K+ VW+ E AF ++KN +
Sbjct: 412 PPPRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKDS-FVWSPEADVAFQALKNVV 236
Query: 909 LKPPILVPPVEGRPLIMYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTML 968
+L P +P + MG VL Q+ H I + SK+F R +
Sbjct: 235 TNTLVLALPDFTKPFTVETDASGSDMGAVLSQEG------HPIAFFSKEFCPKLVRSSTY 74
Query: 969 EKTCCALAWAAKRLRHYLVNH 989
A+ K+ R YL+ H
Sbjct: 73 VHELAAITNVVKKWRQYLLGH 11
>BE802896
Length = 416
Score = 65.9 bits (159), Expect = 1e-10
Identities = 39/128 (30%), Positives = 61/128 (47%)
Frame = -2
Query: 860 FLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLKPPILVPPVE 919
FLG + RFI P+ LL+K +ND+C+ AFD +K L+ PI+ P
Sbjct: 412 FLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDW 233
Query: 920 GRPLIMYLVVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAA 979
P + + ++G VL Q+ + K IYY S+ + YT EK A+ +A
Sbjct: 232 TAPFELMCDASNYALGVVLAQKID--KLPRVIYYSSRTLDAAQANYTTTEKELLAIVFAL 59
Query: 980 KRLRHYLV 987
++ YL+
Sbjct: 58 EKFHSYLL 35
>BI317507
Length = 359
Score = 62.8 bits (151), Expect = 1e-09
Identities = 33/114 (28%), Positives = 58/114 (49%)
Frame = -1
Query: 782 DMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDK 841
++++ S D + H+ +LT + + L+K +L N KC F + + LG ++S+ + +D +K
Sbjct: 353 NILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNK 174
Query: 842 VRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWND 895
V+++ E P P+ K+V FL Y +FI L KN W D
Sbjct: 173 VKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAPRPLTDLTKNDGFKWGD 12
>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
Length = 724
Score = 60.5 bits (145), Expect = 5e-09
Identities = 33/86 (38%), Positives = 47/86 (54%)
Frame = +1
Query: 1123 TNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLL 1182
TNN AEY A I G++ A+ + I GDS LV QI G W+ + NL + A+ L
Sbjct: 64 TNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELK 243
Query: 1183 TYFTKVELHHIPRDENQMADALATLS 1208
F+ ++ H+ R+ N ADA A L+
Sbjct: 244 DKFSSFQISHVLRNFNSDADAQANLA 321
>BG725601 similar to PIR|H86337|H86 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (1%)
Length = 285
Score = 59.7 bits (143), Expect = 9e-09
Identities = 31/90 (34%), Positives = 49/90 (54%)
Frame = -3
Query: 616 HRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG 675
H++ + V Q+ R+ + + EV K A F+ + Y + ++V V K +G
Sbjct: 277 HKLAICNDVKLVTQRKRKIREERCQTV*QEVVKLAIASFIRDINYST*LFSVVMVKKPNG 98
Query: 676 KVRMCVDFRDLNKASPKDNFPLPHIDMLVD 705
K R+C D+ DLN A PKD +PLP+ID + D
Sbjct: 97 KWRICTDYIDLN*ACPKDAYPLPNIDHMTD 8
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,276,914
Number of Sequences: 63676
Number of extensions: 908727
Number of successful extensions: 4317
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 4075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4304
length of query: 1391
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1282
effective length of database: 5,698,948
effective search space: 7306051336
effective search space used: 7306051336
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC145220.4