BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145219.13 - phase: 0 /pseudo
(702 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC213061 86 7e-17
TC231922 84 3e-16
CO984521 81 1e-15
TC231841 81 1e-15
TC233392 76 6e-14
TC223713 73 5e-13
CO979823 73 5e-13
TC221865 71 1e-12
TC233956 69 7e-12
TC211809 56 2e-11
BM527030 68 2e-11
CA851073 67 3e-11
BG239687 67 3e-11
CO986021 67 3e-11
BI316892 67 4e-11
TC222789 65 1e-10
BI973267 65 1e-10
BE660043 63 5e-10
BG404993 62 9e-10
TC213899 58 1e-08
>TC213061
Length = 823
Score = 85.5 bits (210), Expect = 7e-17
Identities = 46/144 (31%), Positives = 80/144 (54%), Gaps = 1/144 (0%)
Frame = +2
Query: 560 EGAWNWRRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTT- 618
E + WRRPL+ E E++ + + G ++SDI D+W+W + + Y R AY+++
Sbjct: 23 EWQFQWRRPLFDSEIEMLVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLARSAYRVIREG 202
Query: 619 MDDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIA 678
+ + +W +VP+KV++ AW LL+D LPT+ NL RR +++ C +
Sbjct: 203 IPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRDNL-RRKRVELHEYVCPLCRSMD 379
Query: 679 ETANHLFLHCTTFGAVWQHIRAWI 702
E+A+HLF HC+ +W +W+
Sbjct: 380 ESASHLFFHCSKILPIWWESLSWV 451
>TC231922
Length = 803
Score = 83.6 bits (205), Expect = 3e-16
Identities = 44/143 (30%), Positives = 74/143 (50%), Gaps = 3/143 (2%)
Frame = -3
Query: 563 WNWRRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTMDDP 622
+ WRR L+ +E + + ++G+ +Q+ D W++++ VY+ + AY++L P
Sbjct: 540 FKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKADSSGVYSTKSAYRLLMPSISP 361
Query: 623 -PIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRG--CLDVEAAGCADGCGIAE 679
P + ++WH ++P + ++ +W L DRLPT+ NL RR D+ C GC E
Sbjct: 360 APSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLC--GCQ-HE 190
Query: 680 TANHLFLHCTTFGAVWQHIRAWI 702
A HLF HC +W WI
Sbjct: 189 EAGHLFFHCKMTKGLWWESMRWI 121
>CO984521
Length = 716
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/122 (33%), Positives = 70/122 (56%), Gaps = 3/122 (2%)
Frame = -2
Query: 584 LNGVVLQSDISDRWLWESNNDDVYTVRGAYQIL---TTMDDPPIVGVGDLVWHKQVPLKV 640
L G ++ ++SD+W W + Y+ + AY+ L T ++ G +W +VPLKV
Sbjct: 679 LEGFTIRPELSDQWKWAAEPSGCYSTKSAYKALHHVTVGEEQD--GKFKELWKLRVPLKV 506
Query: 641 SIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQHIRA 700
+I AW L++D+LPTK NL R+ ++++ C + ETA+HLF HC+ +W ++
Sbjct: 505 AIFAWRLIQDKLPTKANL-RKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWWESQS 329
Query: 701 WI 702
W+
Sbjct: 328 WV 323
>TC231841
Length = 791
Score = 81.3 bits (199), Expect = 1e-15
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +3
Query: 584 LNGVVLQSDISDRWLWESNNDDVYTVRGAYQILT-TMDDPPIVGVGDLVWHKQVPLKVSI 642
+ G +Q D+W+W+++ YT + AY +L M + GV + +W ++P K++I
Sbjct: 30 VEGHRIQPQQGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEELWKLKLPSKITI 209
Query: 643 MAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQHIRAWI 702
AW L+RDRLPT+ NL RR ++V+ C E+A HLF HC+ VW +W+
Sbjct: 210 FAWRLIRDRLPTRSNL-RRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWV 386
>TC233392
Length = 1145
Score = 75.9 bits (185), Expect = 6e-14
Identities = 39/115 (33%), Positives = 63/115 (53%), Gaps = 1/115 (0%)
Frame = -1
Query: 589 LQSDISDRWLWESNNDDVYTVRGAYQILTT-MDDPPIVGVGDLVWHKQVPLKVSIMAWCL 647
+Q + D W+W+ +++Y+ R AY++L ++ G +W ++P K SI AW L
Sbjct: 674 IQQQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQDLWKLKIPAKASIFAWRL 495
Query: 648 LRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQHIRAWI 702
+RDRLPTK NL RR + +E + C E A+H+FL C +W + W+
Sbjct: 494 IRDRLPTKSNLHRRQVV-LEDSLCPFCRIREEDASHIFLECNKIRPLWWESQTWV 333
>TC223713
Length = 420
Score = 72.8 bits (177), Expect = 5e-13
Identities = 37/109 (33%), Positives = 60/109 (54%), Gaps = 4/109 (3%)
Frame = +1
Query: 598 LWESNNDDVYTVRGAYQILTTMDDPPIVGVGDLVWHK----QVPLKVSIMAWCLLRDRLP 653
+WE++ YT + AY ++ ++ + G+ D + + +VP+K ++ AW LLRDRLP
Sbjct: 7 VWEADQSGQYTAQTAYNLMREVE---VGGIQDRAFEEL*KLKVPIKFAVFAWRLLRDRLP 177
Query: 654 TKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQHIRAWI 702
TK NL RR ++V C + E A HLF HC+ +W +W+
Sbjct: 178 TKANLHRRQ-IEVTNRSCPFCSNMEEEAGHLFFHCSKIIPIWWETSSWV 321
>CO979823
Length = 853
Score = 72.8 bits (177), Expect = 5e-13
Identities = 45/152 (29%), Positives = 67/152 (43%), Gaps = 5/152 (3%)
Frame = -2
Query: 556 GRMEEGAW----NWRRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRG 611
G + W NWRRP E + + + + D+WLW+ Y+ +
Sbjct: 831 GTITNSGWE*QLNWRRPXXDSEIAMADSFLGEITQQQIHPQREDKWLWKPEPGGHYSTKS 652
Query: 612 AYQILTTMDDPPIVGVGDL-VWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAG 670
Y +L I +W ++P K ++ AW L+RDRLPTK NL RR + V+
Sbjct: 651 GYHVLWGELTEEIQDADFAEIWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVM-VQDMV 475
Query: 671 CADGCGIAETANHLFLHCTTFGAVWQHIRAWI 702
C I E A HLF +CT +W +W+
Sbjct: 474 CPLCNNIEEGAAHLFFNCTKTLPLWWESMSWV 379
>TC221865
Length = 1045
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Frame = -3
Query: 560 EGAWNWRRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILT-- 617
E + WRRPL+ E + + ++ + ++D W+W+S + Y+ R AY ++
Sbjct: 773 EWKFQWRRPLFDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHLMQHE 594
Query: 618 ---TMDDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADG 674
DP + +W ++P K +I A L++DRLPTK NL RR + + C
Sbjct: 593 AAKANTDPAF----EEIWKLKIPAKAAIFA*RLVKDRLPTKNNL-RRRQVQLNGTLCLFC 429
Query: 675 CGIAETANHLFLHCTTFGAVWQHIRAWI 702
E A+HLF CT VW +WI
Sbjct: 428 RNYEEEASHLFFSCTKTQPVWWESLSWI 345
>TC233956
Length = 757
Score = 68.9 bits (167), Expect = 7e-12
Identities = 37/120 (30%), Positives = 63/120 (51%), Gaps = 1/120 (0%)
Frame = +2
Query: 584 LNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTMDDPPIVGVG-DLVWHKQVPLKVSI 642
++ + L ++ +D W+W + + + + + AYQ++ + D +G +W +VP K
Sbjct: 26 IHEIRLNNNFNDTWVWRAESTGIISTKSAYQVIKSELDDEGQHLGFKKLWEIKVPPKALS 205
Query: 643 MAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQHIRAWI 702
W LL DRLPTK NL++R + VE C +ETA+HLF C +W +W+
Sbjct: 206 FVWRLLWDRLPTKDNLIKRQ-IQVEDDLCPFCHSQSETASHLFFTCGKIMPLWWEFLSWV 382
>TC211809
Length = 895
Score = 55.8 bits (133), Expect(2) = 2e-11
Identities = 30/97 (30%), Positives = 51/97 (51%), Gaps = 1/97 (1%)
Frame = +2
Query: 607 YTVRGAYQILT-TMDDPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLD 665
Y+ + AY++L + P+ +W+ ++P K + AW L++DRLPT NL R ++
Sbjct: 206 YSTKSAYRLLMEATGEFPVDRTYVDLWNLKIPSKAIVFAWRLIKDRLPTWTNL-RVRQVE 382
Query: 666 VEAAGCADGCGIAETANHLFLHCTTFGAVWQHIRAWI 702
+ + C E A HLF HCT +W ++W+
Sbjct: 383 LNDSRCPLCNSSEEDAAHLFFHCTKTEXLWWETQSWV 493
Score = 32.0 bits (71), Expect(2) = 2e-11
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 556 GRMEEGAW----NWRRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNN 603
G E+ W +WRRPL+ E + E + L V + D D W+W++++
Sbjct: 40 GSQEDTGWE*NFSWRRPLFDNEIGMAAEFLEELAQVTIHQDRPDVWVWKADS 195
>BM527030
Length = 421
Score = 67.8 bits (164), Expect = 2e-11
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Frame = +3
Query: 566 RRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTMDDPPIV 625
RRP + W +V L G L +D D +W+ + Y VR Y L +P V
Sbjct: 3 RRPWFQWG*AMVTSFMNKLEGASLVADRQDSLVWKLALTECYFVRDPYLFLIENTNPVYV 182
Query: 626 GVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGC-GIAETANHL 684
+W +P V+I W L +D+LPT+ NL R L E C G E ++HL
Sbjct: 183 LFYRSIWMLAIPHNVAIFEWKLSKDKLPTRKNLQCRNILLEEQHQLCPFCSGKEEDSSHL 362
Query: 685 FLHCTTFGAVWQHIRAWI 702
C+ +WQ+ WI
Sbjct: 363 IFTCSFSYQIWQNCYKWI 416
>CA851073
Length = 633
Score = 67.0 bits (162), Expect = 3e-11
Identities = 35/117 (29%), Positives = 64/117 (53%), Gaps = 2/117 (1%)
Frame = +1
Query: 587 VVLQSDISDRWLWESNNDDVYTVRGAYQILTTMD-DPPIVGVGDLVWHKQVPLKVSIMAW 645
+ +QS + D +W+++ VY+ + AY+IL T + + +W ++P + ++ +W
Sbjct: 4 IQIQSHLQDTMVWKADPCGVYSTKSAYRILMTCNRHVSEANIFKTIWKLKIPPRAAVFSW 183
Query: 646 CLLRDRLPTKVNLVRRGCLDVEAAGCADGCGI-AETANHLFLHCTTFGAVWQHIRAW 701
L++DRLPT+ NL+RR + ++ C CG E A+HLF +C +W W
Sbjct: 184 RLIKDRLPTRHNLLRRN-VSIQENEC-PLCGYEQEEADHLFFNCKMTRGLWWESMRW 348
>BG239687
Length = 443
Score = 67.0 bits (162), Expect = 3e-11
Identities = 36/101 (35%), Positives = 56/101 (54%), Gaps = 3/101 (2%)
Frame = -3
Query: 564 NWRRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILT---TMD 620
NW R L+ WE ELV + + L+ V ++ + D W+W+SN Y VR AY ++ +D
Sbjct: 321 NWGRNLFEWERELVAKFLEELHLVEVK*NEEDSWVWKSNESGGYNVRDAYMLILHDGLVD 142
Query: 621 DPPIVGVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRR 661
+ + VW +P V+ +W LL+DR+ TK NL +R
Sbjct: 141 EH--ANILKQVWKASIPSNVAAFSWSLLQDRIQTKENLSKR 25
>CO986021
Length = 900
Score = 67.0 bits (162), Expect = 3e-11
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Frame = -1
Query: 560 EGAWNW----RRPLWVWEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQI 615
+ WNW RR L+ E E ++ + + + D LW+++ +Y+ + AY++
Sbjct: 900 QNTWNWDFKWRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYRL 721
Query: 616 LTTMDDPPIVGVG-DLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRR--GCLDVEAAGCA 672
L + P ++W ++P + + +W L RDRL + NL+RR D+ C
Sbjct: 720 LLPNNRPGQHSSNFKILWKLKIPPRAELFSWRLFRDRLSIRANLLRRHVALQDIMCPLCG 541
Query: 673 DGCGIAETANHLFLHCTTFGAVWQHIRAW 701
+ E A HLF HC +W W
Sbjct: 540 NH---QEEAGHLFFHCRMTIGLWWESMNW 463
>BI316892
Length = 421
Score = 66.6 bits (161), Expect = 4e-11
Identities = 32/93 (34%), Positives = 54/93 (57%), Gaps = 3/93 (3%)
Frame = +1
Query: 572 WEEELVEECRKLLNGVVLQSDISDRWLWESNNDDVYTVRGAYQILTTMDDPPI---VGVG 628
WE L+++ LLN V++ ++D W+WE YT + AY +L+ D P+ +
Sbjct: 142 WENYLIQQLFLLLNSVIIHHSLADSWVWEPCPTGRYTSKSAYLLLSC--DSPLQYSTNIF 315
Query: 629 DLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRR 661
++W ++P K S + W +LR+RLPTK NL ++
Sbjct: 316 VVLWRLKIPHKTSFLIWKILRNRLPTKDNLCKQ 414
>TC222789
Length = 954
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = +2
Query: 631 VWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTT 690
+W +VP+K + AW LLRDRLPTKVNL RR + V C + E A HLF HC+
Sbjct: 362 LWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQ-IQVMDRSCPFCRNVEEDAGHLFFHCSK 538
Query: 691 FGAVWQHIRAWI 702
+W +W+
Sbjct: 539 IIPIWWESLSWV 574
>BI973267
Length = 406
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/115 (33%), Positives = 57/115 (48%), Gaps = 1/115 (0%)
Frame = +1
Query: 589 LQSDISDRWLWESNNDDVYTVRGAYQILTT-MDDPPIVGVGDLVWHKQVPLKVSIMAWCL 647
L ++ D W W + + +T + YQ+L + +DD + + ++P K AW L
Sbjct: 43 LNINLKDTWTWRAEANGEFTTKSTYQVLQSELDDQGQYEGFQQLCNIKIPPKALSFAWRL 222
Query: 648 LRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQHIRAWI 702
L DRLPTK NLV+R + VE C ETA+HLF C +W +WI
Sbjct: 223 L*DRLPTKDNLVKRQ-IQVENDLCPFCHNQPETASHLFFKCDKIMPMWWEFFSWI 384
>BE660043
Length = 714
Score = 62.8 bits (151), Expect = 5e-10
Identities = 38/112 (33%), Positives = 59/112 (51%), Gaps = 6/112 (5%)
Frame = -2
Query: 584 LNGVVLQSDISDRWLWESNNDDVYTVRGAYQILT------TMDDPPIVGVGDLVWHKQVP 637
++ LQ +D W+W+ ++ Y+ R AY +L MDD + +W ++P
Sbjct: 659 ISHTALQQHAADSWVWKPESNGYYSSRNAYILLQGNSEEGNMDD-----IFKDLWKLKIP 495
Query: 638 LKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCT 689
K SI A L+RDRLPTK N+ R+ +D+ + C ETA+HLF C+
Sbjct: 494 AKASIFAGRLIRDRLPTKSNM-RKRQIDINDSLCPFCSIKEETASHLFFDCS 342
>BG404993
Length = 412
Score = 62.0 bits (149), Expect = 9e-10
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Frame = -3
Query: 589 LQSDISDRWLWESNNDDVYTVRGAYQILT-TMDDPPIVGVGDLVWHKQVPLKVSIMAWCL 647
+Q +D W W+++ Y+ + AY++L + G+ +W ++P K + W L
Sbjct: 350 IQQHEADSWTWKADPSGNYSTKTAYELLQEAIRGDNEDGIFVQLWKLKIPPKAPVFTWRL 171
Query: 648 LRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLFLHCTTFGAVWQHIRAWI 702
+ DRLPTKVNL RR +++ + C E A HLF +C W +W+
Sbjct: 170 INDRLPTKVNL-RRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPFWWESLSWV 9
>TC213899
Length = 497
Score = 58.2 bits (139), Expect = 1e-08
Identities = 29/77 (37%), Positives = 45/77 (57%)
Frame = +3
Query: 626 GVGDLVWHKQVPLKVSIMAWCLLRDRLPTKVNLVRRGCLDVEAAGCADGCGIAETANHLF 685
G + +W +VP K++ AW LL+DRLPT++NL +R VE++ C + E+A HLF
Sbjct: 54 GAFEELWKLKVP*KIAAFAWRLLKDRLPTRINL*KRQIEMVESS-CPFCSLVEESAGHLF 230
Query: 686 LHCTTFGAVWQHIRAWI 702
C+ VW +W+
Sbjct: 231 FQCSKIIQVWWESLSWV 281
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.363 0.165 0.639
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,551,138
Number of Sequences: 63676
Number of extensions: 578952
Number of successful extensions: 7352
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 3960
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 3045
Number of HSP's gapped (non-prelim): 4620
length of query: 702
length of database: 12,639,632
effective HSP length: 104
effective length of query: 598
effective length of database: 6,017,328
effective search space: 3598362144
effective search space used: 3598362144
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 62 (28.5 bits)
Medicago: description of AC145219.13