Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145061.27 - phase: 0 /pseudo
         (615 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP005379 ORF (334 AA)                                                 251  7e-67
CF922321                                                              182  3e-46
TC233500 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable...   151  9e-37
CF922798                                                              134  9e-32
TC233466 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable...    72  6e-13
TC212179                                                               49  9e-06
BE440417                                                               42  0.001
BI425208                                                               39  0.009
TC234090                                                               31  1.4
TC207572 similar to UP|Q8AVP1 (Q8AVP1) Rpf1-pending-prov protein...    31  1.4
BE806169                                                               31  1.8
AW200904                                                               31  1.8
TC226889 homologue to UP|Q9SXP4 (Q9SXP4) DNA-binding protein NtW...    30  3.2
TC229259 weakly similar to UP|YPL6_ARATH (Q9FN32) Yippee-like pr...    30  4.1
TC224833 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugati...    30  4.1
TC224915 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugati...    29  5.4
TC213207 weakly similar to GB|AAQ65132.1|34365641|BT010509 At3g4...    29  5.4
TC210762                                                               28  9.2
AW705803 PIR|B86141|B86 protein T25K16.3 [imported] - Arabidopsi...    28  9.2

>NP005379 ORF (334 AA)
          Length = 1002

 Score =  251 bits (641), Expect = 7e-67
 Identities = 140/329 (42%), Positives = 193/329 (58%), Gaps = 5/329 (1%)
 Frame = +1

Query: 195 IMRDTTPVKDNLPLSFYEAQKLVEKLGLEVKTTDCCVNGCMLFYDNEFGKNDGALVACKF 254
           I+ D  P  + LP S+Y+A+K++  +G+E +    C N C+L Y +EF +    +  C  
Sbjct: 40  IVHDLLPQDNTLPKSYYQAKKILCPMGMEYQKIHACPNDCIL-YRHEFEE----MSKCPR 204

Query: 255 CNAPRYEVCDD----AGSQKKKRVSIKSMFYLPIIPRLQRLFASTHTADKMTWHYYNKPN 310
           C A RY+V DD    +    KK    K ++YLPIIPR +RLFA+   A  +TWH   + +
Sbjct: 205 CGASRYKVKDDEDCSSDENSKKGPPAKVLWYLPIIPRFKRLFANEDDAKDLTWHANGRKS 384

Query: 311 SGVMRHPCDGVAWKHFDQVHRDFAEDPHNVRLGLCSDGFIPYIQASATPYSCWPILLTPY 370
            G++RHP D   WK  D ++ +F ++  N+RLGL SDG  PY   S T +S WP+LL  Y
Sbjct: 385 DGMVRHPADCSQWKKIDSLYPNFGKEARNLRLGLASDGMNPYGNLS-TQHSSWPVLLVIY 561

Query: 371 NVPLEMCMSKPYLFLSCIVPGPTSSLDGIDVYIQPLIDDLNRLWN-GVSTYDIARKKIFR 429
           N P  +CM + Y+ LS ++ GP    + IDVY+ PLI+DL +LW+ GV  +D  RK+ F+
Sbjct: 562 NFPPWLCMKRKYMMLSMMISGPRQPGNDIDVYLSPLIEDLRKLWDEGVLVFDGFRKETFQ 741

Query: 430 MRAALMWTINDFPAYGMLS*WSTHGRLACPHCMEQTKAIWFHHGRKHS*FDCHRPFLPAT 489
           MRA L  TINDFPAYG LS +S  G LACP C E T  I   HGRK + +  HR FL A 
Sbjct: 742 MRAMLFCTINDFPAYGNLSGYSVKGHLACPICEEDTSYIQLKHGRK-TVYTRHRVFLKAH 918

Query: 490 HEFRKKKNLFTKGKTEKDGPPPRTTSEEV 518
           H +R+ K  F  G  E +      T E+V
Sbjct: 919 HPYRRLKKAF-NGSQEHEIRRTPLTGEQV 1002


>CF922321 
          Length = 742

 Score =  182 bits (463), Expect = 3e-46
 Identities = 102/243 (41%), Positives = 141/243 (57%), Gaps = 1/243 (0%)
 Frame = -1

Query: 284 IIPRLQRLFASTHTADKMTWHYYNKPNSGVMRHPCDGVAWKHFDQVHRDFAEDPHNVRLG 343
           IIPRL+RLFA+   A  +TWH   +   G++R       WK  D+++ D  ++  N+RLG
Sbjct: 742 IIPRLKRLFANGDDAKDLTWHANGRNCDGMIRRLAVSSQWKKIDRLYLDLGKEASNLRLG 563

Query: 344 LCSDGFIPYIQASATPYSCWPILLTPYNVPLEMCMSKPYLFLSCIVPGPTSSLDGIDVYI 403
           L SDG  PY  +S+T +S WP+LL  YN+P  +CM + Y+ LS ++  P    + IDVY+
Sbjct: 562 LASDGMNPY-GSSST*HSSWPVLLVIYNLPPWLCMKRKYMMLSMMISNPRQPGNDIDVYL 386

Query: 404 QPLIDDLNRLWN-GVSTYDIARKKIFRMRAALMWTINDFPAYGMLS*WSTHGRLACPHCM 462
             LI+DL +LW+ G   ++    + F MRA L  TINDFPAYG LS ++  G  +CP C 
Sbjct: 385 SSLIEDLTKLWDEGFLAFNGFWNETFPMRAMLFCTINDFPAYGNLSGYNVKGHHSCPICE 206

Query: 463 EQTKAIWFHHGRKHS*FDCHRPFLPATHEFRKKKNLFTKGKTEKDGPPPRTTSEEVYRRV 522
           E T  I   HGRK + +  HR FL   H +R+ K  F  G    D  P   T+EEVY+RV
Sbjct: 205 ENTSYIQLKHGRK-TVYSRHRRFLTPNHPYRRLKKAF-NGSQGHDIVPIPLTAEEVYQRV 32

Query: 523 NEL 525
             L
Sbjct: 31  QHL 23


>TC233500 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable element
           (Fragment), partial (65%)
          Length = 1033

 Score =  151 bits (381), Expect = 9e-37
 Identities = 83/222 (37%), Positives = 125/222 (55%), Gaps = 1/222 (0%)
 Frame = +2

Query: 301 MTWHYYNKPNSGVMRHPCDGVAWKHFDQVHRDFAEDPHNVRLGLCSDGFIPYIQASATPY 360
           +TWH   +    ++RH  D + WK  D+++ DF ++  N+ LGL +D   PY    +T +
Sbjct: 8   LTWHANGRNCDRMLRHLADSLQWKKIDRLYPDFGKETKNLTLGLATDAMNPY-GCLSTQH 184

Query: 361 SCWPILLTPYNVPLEMCMSKPYLFLSCIVPGPTSSLDGIDVYIQPLIDDLNRLWN-GVST 419
           + WP+LL  YN+P  +CM + Y+ LS ++ GP    + I+VY+ PLI+DL +L + GV  
Sbjct: 185 NSWPVLLVIYNLPHWLCMKRKYMMLSMMITGPRQPGNDINVYLNPLIEDLTKL*DEGVLV 364

Query: 420 YDIARKKIFRMRAALMWTINDFPAYGMLS*WSTHGRLACPHCMEQTKAIWFHHGRKHS*F 479
           +D  R + F + A L  TINDFP Y  LS +S  G  ACP C E T  I   HGRK + +
Sbjct: 365 FDGFRNETFNLCAMLFCTINDFPTYENLSGYSVKGHRACPICEEDTSYIQQKHGRK-TVY 541

Query: 480 DCHRPFLPATHEFRKKKNLFTKGKTEKDGPPPRTTSEEVYRR 521
             HR FL   H +R+ K  F +   E +      T ++V++R
Sbjct: 542 TRHRRFLKPHHPYRRLKKAFNE-S*EHENALVLLTGDQVFQR 664


>CF922798 
          Length = 617

 Score =  134 bits (338), Expect = 9e-32
 Identities = 80/203 (39%), Positives = 113/203 (55%), Gaps = 1/203 (0%)
 Frame = -2

Query: 327 DQVHRDFAEDPHNVRLGLCSDGFIPYIQASATPYSCWPILLTPYNVPLEMCMSKPYLFLS 386
           D ++ DF+++  N+RLGL +DG  PY   S T YS W +LL  YN+   +CM+K Y+ LS
Sbjct: 613 DHLYLDFSKEAINLRLGLATDGMNPYGSLS-TQYSLWSVLLVIYNLSPWLCMNKKYMMLS 437

Query: 387 CIVPGPTSSLDGIDVYIQPLIDDLNRLWN-GVSTYDIARKKIFRMRAALMWTINDFPAYG 445
            ++  P    + IDVY+ PLI+DL  L +  V  +D  + + F + A L  TINDFPAYG
Sbjct: 436 MMILSPRQPGNDIDVYLSPLIEDLTML*DEEVLVFDGFQNETFHLCAMLFCTINDFPAYG 257

Query: 446 MLS*WSTHGRLACPHCMEQTKAIWFHHGRKHS*FDCHRPFLPATHEFRKKKNLFTKGKTE 505
            LS +S     ACP C E T  I   HGRK + +  H+ FL   H +R+ K  F  G  E
Sbjct: 256 NLSGYSVKSHRACPICEEDTSYIQLKHGRK-TIYTRHQRFLKPHHLYRRLKKEF-NGSQE 83

Query: 506 KDGPPPRTTSEEVYRRVNELGLL 528
            +  P     + VY++V  L  +
Sbjct: 82  HETTPILLVGDHVYQQVQHLNTI 14


>TC233466 similar to UP|Q6I8M7 (Q6I8M7) Soybean Tgm5 transposable element
           (Fragment), partial (37%)
          Length = 790

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
 Frame = +2

Query: 195 IMRDTTPVKDNLPLSFYEAQKLVEKLGLEVKTTDCCVNGCMLFYDNEFGKNDGALVACKF 254
           ++ D  P ++ LP S+Y+A+K++  + +E      C N C+L Y +EF +    +  C  
Sbjct: 455 VVHDVLPEENTLPKSYYQAKKILCSMDMEY*KIHACPNDCIL-YRHEFEE----MSKCPR 619

Query: 255 CNAPRYEVCDD----AGSQKKKRVSIKSMFYLPIIPRLQRLFASTHTADKMTWH 304
           C   RY+V DD    +    KK    K ++YLPI+P+ +RLFA+   A  +TWH
Sbjct: 620 CGVSRYKVKDDEECSSDENSKKGPLAKVLWYLPIVPKFKRLFANGDDAKDLTWH 781



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 23/78 (29%), Positives = 32/78 (40%), Gaps = 4/78 (5%)
 Frame = +3

Query: 28  DGVRDFVAYAMAQDAFQLEGGIRCSCVKCTCRLIRSPKDVLNHLKDLGFMENYYVWIYHG 87
           +GV  F+  A  +      G   C C+ C     +   D+ +HL       NY  WI+HG
Sbjct: 9   EGVEQFLQLASERSRPDENGKFFCPCINCLNGRRQKVNDIRDHLLCDEIKRNYTTWIWHG 188

Query: 88  E----QEPTNNTEFDVNM 101
           E    Q    +  FDV M
Sbjct: 189 EMADMQSGPQSEPFDVEM 242


>TC212179 
          Length = 764

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 26/93 (27%), Positives = 41/93 (43%), Gaps = 4/93 (4%)
 Frame = +1

Query: 13  DRKYPGKRKLKAAFVDGVRDFVAYAMAQDAFQLEGGIRCSCVKCTCRLIRSPKDVLNHLK 72
           DR +  + ++   + +GV  F+ +A  +     +G   C C+ C     +   D+  HL 
Sbjct: 34  DRSWMNQSRISPEYEEGVEQFLQFASQRGQPDEDGKYYCPCINCLNGRRQILDDIREHLL 213

Query: 73  DLGFMENYYVWIYHGE----QEPTNNTEFDVNM 101
             G   NY  WI+HGE    Q    +  FDV M
Sbjct: 214 CDGIKRNYTTWIWHGEMTDMQSGQQSEPFDVEM 312


>BE440417 
          Length = 192

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = +2

Query: 464 QTKAIWFHHGRKHS*FDCHRPFLPATHEFRKKKNLFTKGKTEKDGPPPRTTSEEV 518
           Q K + FH   K   FD H  FLP  H +R+ K  F KG  E   PPP  +S +V
Sbjct: 11  QFKTLNFH---KICYFDFHHQFLPLNHAYRRNKKSFKKGWVETSPPPPCLSSLDV 166


>BI425208 
          Length = 413

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 17/63 (26%), Positives = 32/63 (49%)
 Frame = -3

Query: 26  FVDGVRDFVAYAMAQDAFQLEGGIRCSCVKCTCRLIRSPKDVLNHLKDLGFMENYYVWIY 85
           ++ G+ DF+ ++ +    + +  IRC C +C     ++  +V+  L    F +NY  W  
Sbjct: 186 YLKGINDFLEFSFSYS--KNKNTIRCPCCRCNAIYYKTRDEVIGDLLKSRFQQNYEHWES 13

Query: 86  HGE 88
           HGE
Sbjct: 12  HGE 4


>TC234090 
          Length = 420

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
 Frame = -1

Query: 479 FDCHRPFLPATHEFRKKKNLFTKGKTEKDGPPPRTTSEEVYRRVNELGLLKFTDV----G 534
           F CH  FLP    + +KKN   +    +   P   + EE++ R ++L  +    V    G
Sbjct: 390 FYCHYHFLPR*CSWERKKNKKLRDIVLRSLSP--LSGEEIWPRFSQLSFIYGNFVRSYLG 217

Query: 535 KRVRHPKYGNEHHWTKRSIFWDLPYWK-DNLLRHNFDVMHIEK 576
            R+     G      +RS+F +L + +  NLL  N +VMHI++
Sbjct: 216 IRMVETIIG------QRSVF*NLLH*RMHNLLHDNINVMHIKR 106


>TC207572 similar to UP|Q8AVP1 (Q8AVP1) Rpf1-pending-prov protein, partial
           (37%)
          Length = 1183

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 24/89 (26%), Positives = 42/89 (46%), Gaps = 3/89 (3%)
 Frame = +3

Query: 466 KAIWFHHGRKHS*FDCHRPFLPATHEFRKKKNLFTKGKTEKDGPPPRTTSEEVYRRVNEL 525
           + + FH+ R    F  HR ++  T E +K ++   KGK +KDG       ++   R+ E 
Sbjct: 639 RVVTFHNQRDFIFFRHHR-YIFETKEVKKAES---KGKKDKDGESENVPEQKTIARLQEC 806

Query: 526 GLLKFTDVGKRVRHPKY---GNEHHWTKR 551
           G  +FT     ++H  +   G E+ W  +
Sbjct: 807 G-PRFTLKLISLQHGTFDTKGGEYEWVHK 890


>BE806169 
          Length = 396

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 138 EETIPNEKALKFYKMMQEVNKPLFEGSSDSKLSMSVRLLAAASDWSVAEEGSECYTDI 195
           +E +  +K + + +  ++V K L  GS     S    LLA  S +S A +GSE Y DI
Sbjct: 43  DEQLKQKKKISYVRRRKDVFKTLGPGSEVESAS----LLAFGSLFSAAYKGSELYVDI 204


>AW200904 
          Length = 174

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 438 INDFPAYGMLS*WSTHGRLACPHCMEQTKAIWFHHGRKHS 477
           +N FPA+     +ST  R    HC E++K IWF     H+
Sbjct: 162 LNSFPAH-----FSTLPRRCADHCCERSKTIWFTXQEIHA 58


>TC226889 homologue to UP|Q9SXP4 (Q9SXP4) DNA-binding protein NtWRKY3,
           partial (11%)
          Length = 471

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 548 WTKRSIFW-DLPYWKDNLLRHNFDVMHIEKNFCDNIIHIVMNVSAKTK 594
           WTKR ++W D  ++ +  L  N+++++++  FC  +I I  ++S K K
Sbjct: 313 WTKRVVYWMDKDFYVN--LTKNYEILYLDMFFCSYLIDI-HSLSTKQK 447


>TC229259 weakly similar to UP|YPL6_ARATH (Q9FN32) Yippee-like protein
           At5g53940, partial (83%)
          Length = 882

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
 Frame = +3

Query: 229 CCVNGCMLFYDNEFGKN-------DGALVACKFCNAP 258
           CCV  C  FY++EF          DG    CKFCN P
Sbjct: 105 CCVVLCG-FYESEFHMGRVFVLELDGRSYGCKFCNTP 212


>TC224833 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugating enzyme
           E2-17 kDa 10/12  (Ubiquitin-protein ligase 10/12)
           (Ubiquitin carrier protein 10/12) , complete
          Length = 683

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 51  CSCVKCTCRLIRSPKD 66
           C C+ CTC L R PKD
Sbjct: 630 CFCLSCTCGLFRGPKD 583


>TC224915 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugating enzyme
           E2-17 kDa 10/12  (Ubiquitin-protein ligase 10/12)
           (Ubiquitin carrier protein 10/12) , complete
          Length = 957

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 51  CSCVKCTCRLIRSPKD 66
           CSC+ CTC   R PKD
Sbjct: 555 CSCLSCTCVQFRGPKD 508


>TC213207 weakly similar to GB|AAQ65132.1|34365641|BT010509 At3g48180
           {Arabidopsis thaliana;} , partial (58%)
          Length = 429

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 266 AGSQKKKRVSIKSMFYLPIIPRLQ---RLFASTHTADKMTWHYYNKPNSGVMRHPCD 319
           +G Q++   S  S  + P++   Q   R FA      +  + Y+N+P+ G+  HP D
Sbjct: 235 SGGQRRYHPSTSSHRWRPLLWSCQNPHRAFACIWRCCRCCFCYWNQPSQGLAHHPTD 65


>TC210762 
          Length = 857

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = +3

Query: 382 YLFLSCIVPGPTSSLDGIDVYIQPLIDDLNR 412
           YL L+ +VP  TS +  + + +QP +D LNR
Sbjct: 108 YLLLNALVPLLTSLVALVPILLQPPLDSLNR 200


>AW705803 PIR|B86141|B86 protein T25K16.3 [imported] - Arabidopsis thaliana,
           partial (4%)
          Length = 416

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 460 HCMEQTKAIWFHHG 473
           HC E+TKAIW  HG
Sbjct: 202 HCREKTKAIWGQHG 243


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,577,369
Number of Sequences: 63676
Number of extensions: 556033
Number of successful extensions: 2476
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2462
length of query: 615
length of database: 12,639,632
effective HSP length: 103
effective length of query: 512
effective length of database: 6,081,004
effective search space: 3113474048
effective search space used: 3113474048
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)


Medicago: description of AC145061.27