TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144931.17 + phase: 0 /pseudo/partial
         (50 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC226236 similar to UP|GAE1_CYATE (O65780) UDP-glucose 4-epimera...    33  0.032
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi...    26  5.0
TC232996 similar to UP|Q8S3B4 (Q8S3B4) NADH-ubiquinone oxidoredu...    26  5.0
TC213420 weakly similar to GB|AAP42748.1|30984570|BT008735 At3g0...    25  6.6

>TC226236 similar to UP|GAE1_CYATE (O65780) UDP-glucose 4-epimerase GEPI42
           (Galactowaldenase) (UDP-galactose 4-epimerase) , partial
           (20%)
          Length = 2007

 Score = 33.1 bits (74), Expect = 0.032
 Identities = 16/17 (94%), Positives = 17/17 (99%)
 Frame = +1

Query: 1   MATTLVSSAGGMLAMLN 17
           MATTLVSSAGGMLAML+
Sbjct: 118 MATTLVSSAGGMLAMLD 168


>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
           partial (34%)
          Length = 407

 Score = 25.8 bits (55), Expect = 5.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 2   ATTLVSSAGGMLAMLNESHISLKIHALSXLNIW 34
           ATT V  +GG+   +  S ISL + A+S   +W
Sbjct: 125 ATTWVCCSGGVWPCV*ASSISLWVEAISSCLVW 27


>TC232996 similar to UP|Q8S3B4 (Q8S3B4) NADH-ubiquinone oxidoreductase
           (Fragment), partial (17%)
          Length = 465

 Score = 25.8 bits (55), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -2

Query: 24  KIHALSXLNIWSIASGQRSPQVSP 47
           KI+AL    IW+ A  Q+  Q+SP
Sbjct: 341 KIYALDLREIWTYARAQK*SQISP 270


>TC213420 weakly similar to GB|AAP42748.1|30984570|BT008735 At3g06080
          {Arabidopsis thaliana;} , partial (10%)
          Length = 448

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 19/29 (64%)
 Frame = +3

Query: 18 ESHISLKIHALSXLNIWSIASGQRSPQVS 46
          ++HI L +H+LS LNI  + + + S  V+
Sbjct: 54 QNHILLNLHSLSFLNILFLGTYEMSKSVT 140


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.123    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,013,563
Number of Sequences: 63676
Number of extensions: 15417
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of query: 50
length of database: 12,639,632
effective HSP length: 26
effective length of query: 24
effective length of database: 10,984,056
effective search space: 263617344
effective search space used: 263617344
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)