BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144929.2 + phase: 0
(120 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO984521 56 2e-09
CO979823 55 5e-09
TC231841 55 5e-09
TC211809 54 8e-09
TC233392 54 1e-08
TC231922 50 1e-07
TC213061 50 2e-07
TC233777 49 3e-07
CF921567 49 4e-07
AW595917 48 6e-07
TC222789 48 6e-07
TC223713 47 1e-06
CA851073 47 2e-06
BU765000 47 2e-06
TC222557 46 2e-06
TC222857 46 3e-06
TC221865 46 3e-06
CA853414 35 3e-06
TC231904 similar to GB|AAL25568.1|16648753|AY058152 AT5g16150/T2... 44 8e-06
TC213899 44 1e-05
>CO984521
Length = 716
Score = 56.2 bits (134), Expect = 2e-09
Identities = 35/101 (34%), Positives = 51/101 (49%), Gaps = 1/101 (0%)
Frame = -2
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W +VPLKV+I AWRLI+++L K NL + + LC E A HLF C
Sbjct: 535 LWKLRVPLKVAIFAWRLIQDKLPTKANLR-KKRVELQEYLCPLCRSVEETASHLFFHCSK 359
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQFAY-LSGSLQARR 116
+ W +SW+++ PY +H Q + S LQ +R
Sbjct: 358 VSPLWWESQSWVNMMGVFPYQPDQHFSQHIFGASVGLQGKR 236
>CO979823
Length = 853
Score = 55.1 bits (131), Expect = 5e-09
Identities = 35/110 (31%), Positives = 58/110 (51%), Gaps = 2/110 (1%)
Frame = -2
Query: 9 IADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEI-A 67
I D IW ++P K ++ AWRL+R+RL K NL R + D +C C +E A
Sbjct: 615 IQDADFAEIWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVMVQD-MVCPL-CNNIEEGA 442
Query: 68 QHLFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQFAY-LSGSLQARR 116
HLF +C W SW+++ +A P ++H +Q+ ++ L+++R
Sbjct: 441 AHLFFNCTKTLPLWWESMSWVNLKTAMPQTPRQHFLQYGTDIADGLKSKR 292
>TC231841
Length = 791
Score = 55.1 bits (131), Expect = 5e-09
Identities = 32/101 (31%), Positives = 52/101 (50%), Gaps = 1/101 (0%)
Frame = +3
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W ++P K++I AWRLIR+RL + NL R + D+ C E A HLF C
Sbjct: 174 LWKLKLPSKITIFAWRLIRDRLPTRSNLR-RKQIEVDDPRCPFCRSAEESAAHLFFHCSR 350
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQFAY-LSGSLQARR 116
W SW+++ P + ++H +Q Y ++ ++A R
Sbjct: 351 IAPVWWESLSWVNLLGVFPNHPRQHFLQHIYGVTAGMRASR 473
>TC211809
Length = 895
Score = 54.3 bits (129), Expect = 8e-09
Identities = 39/115 (33%), Positives = 56/115 (47%), Gaps = 1/115 (0%)
Frame = +2
Query: 3 TNEKPAIADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCG 62
T E P D T +W+ ++P K + AWRLI++RL NL VR +D++ C
Sbjct: 245 TGEFPV--DRTYVDLWNLKIPSKAIVFAWRLIKDRLPTWTNLRVRQVELNDSR-CPLCNS 415
Query: 63 GLEIAQHLFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQFAYLS-GSLQARR 116
E A HLF C W +SW++ A P+ + H +Q S G + ARR
Sbjct: 416 SEEDAAHLFFHCTKTEXLWWETQSWVNSLGAFPHNPKDHFLQHDNRSAGGVXARR 580
>TC233392
Length = 1145
Score = 53.9 bits (128), Expect = 1e-08
Identities = 31/91 (34%), Positives = 45/91 (49%)
Frame = -1
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W ++P K SI AWRLIR+RL K NL R + D+ LC E A H+FL C
Sbjct: 545 LWKLKIPAKASIFAWRLIRDRLPTKSNLHRRQVVLEDS-LCPFCRIREEDASHIFLECNK 369
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQFAY 107
W ++W+ P ++H +Q +
Sbjct: 368 IRPLWWESQTWVRSLGVSPINKRQHFLQHVH 276
>TC231922
Length = 803
Score = 50.4 bits (119), Expect = 1e-07
Identities = 33/115 (28%), Positives = 50/115 (42%), Gaps = 2/115 (1%)
Frame = -3
Query: 7 PAIADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEI 66
PA + +WH ++P + ++ +WRL +RL + NL R D + GC E
Sbjct: 363 PAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQH-EE 187
Query: 67 AQHLFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQF--AYLSGSLQARRSFF 119
A HLF C W W+ + A P H IQF + + S +RR +
Sbjct: 186 AGHLFFHCKMTKGLWWESMRWIRVIGALPADPASHFIQFCDGFAATSNHSRRGMW 22
>TC213061
Length = 823
Score = 49.7 bits (117), Expect = 2e-07
Identities = 28/91 (30%), Positives = 47/91 (50%)
Frame = +2
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W +VP+KV++ AWRL+++ L +DNL + H+ +C E A HLF C
Sbjct: 239 LWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRVELHE-YVCPLCRSMDESASHLFFHCSK 415
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQFAY 107
W SW+ + A P++ + H Q ++
Sbjct: 416 ILPIWWESLSWVKLVGAFPHHPRHHFHQHSH 508
>TC233777
Length = 503
Score = 49.3 bits (116), Expect = 3e-07
Identities = 30/81 (37%), Positives = 39/81 (48%)
Frame = +2
Query: 21 QVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPCFNSQ 80
+VP K+S+ AWRL+RNRL + NL R D C E HLF+ C
Sbjct: 20 KVPSKISVFAWRLLRNRLPTRTNLHRRQLQIIDMSCPFCRCSE-EDEAHLFIHCSKIQPL 196
Query: 81 WDLVRSWLDICSADPYYLQKH 101
W SWL+I A P ++H
Sbjct: 197 WWESMSWLNIQGATPQTPRQH 259
>CF921567
Length = 686
Score = 48.5 bits (114), Expect = 4e-07
Identities = 30/99 (30%), Positives = 44/99 (44%)
Frame = -1
Query: 8 AIADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIA 67
AI D N +W ++P + S +WRL +NRL ++NL R H C E
Sbjct: 620 AIEDRVLNIMWSLKIPPRASAFSWRLFKNRLPTRENLKRRQVSLH-TYSCPLCDLEEESV 444
Query: 68 QHLFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQFA 106
HLF +C S W W++ P + H +QF+
Sbjct: 443 NHLFFNCSKTRSLWWEPLRWVNRVGPFPTDPKNHFLQFS 327
>AW595917
Length = 404
Score = 48.1 bits (113), Expect = 6e-07
Identities = 28/88 (31%), Positives = 43/88 (48%)
Frame = +1
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W ++P K ++ WRLI+++L K NL R + + LC E A HLF +C
Sbjct: 7 LWKLKIPPKAAVFTWRLIKDQLPTKANL--RRQMEISDSLCPLCNNSKEDATHLFFNCSK 180
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQ 104
W SW+ A P L++H +Q
Sbjct: 181 TLPFWWESLSWVKTVGAFPKDLREHFLQ 264
>TC222789
Length = 954
Score = 48.1 bits (113), Expect = 6e-07
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = +2
Query: 9 IADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQ 68
I D +W +VP+K + AWRL+R+RL K NL R D C E A
Sbjct: 338 IKDKAFEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQIQVMDRS-CPFCRNVEEDAG 514
Query: 69 HLFLSCPCFNSQWDLVRSWLDICSADPYYLQKHDIQF-AYLSGSLQARR 116
HLF C W SW++I A P ++H +Q ++G ++ R
Sbjct: 515 HLFFHCSKIIPIWWESLSWVNISGALPKDPRQHFLQHDLIMAGGIRTTR 661
>TC223713
Length = 420
Score = 47.4 bits (111), Expect = 1e-06
Identities = 30/88 (34%), Positives = 43/88 (48%)
Frame = +1
Query: 21 QVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPCFNSQ 80
+VP+K ++ AWRL+R+RL K NL R + N+ C E A HLF C
Sbjct: 121 KVPIKFAVFAWRLLRDRLPTKANLH-RRQIEVTNRSCPFCSNMEEEAGHLFFHCSKIIPI 297
Query: 81 WDLVRSWLDICSADPYYLQKHDIQFAYL 108
W SW++I P ++H +Q L
Sbjct: 298 WWETSSWVNISGPFPKDPRQHFLQHGLL 381
>CA851073
Length = 633
Score = 46.6 bits (109), Expect = 2e-06
Identities = 26/89 (29%), Positives = 41/89 (45%)
Frame = +1
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW ++P + ++ +WRLI++RL + NL+ R +N+ + G E A HLF +C
Sbjct: 139 IWKLKIPPRAAVFSWRLIKDRLPTRHNLLRRNVSIQENECPLCGY-EQEEADHLFFNCKM 315
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQF 105
W W I H +QF
Sbjct: 316 TRGLWWESMRWNQIVGPLSVSPASHFVQF 402
>BU765000
Length = 425
Score = 46.6 bits (109), Expect = 2e-06
Identities = 27/80 (33%), Positives = 41/80 (50%)
Frame = +2
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W +VP KV++ AWRL+++RL +DNL + H+ LC E A HLF C
Sbjct: 59 LWKLKVPPKVAVFAWRLLKDRLPTRDNLRRKQVELHE-YLCPFCRTMEESACHLFFHCRK 235
Query: 77 FNSQWDLVRSWLDICSADPY 96
W SW+++ P+
Sbjct: 236 VLPVWWESLSWVNLVGVFPH 295
>TC222557
Length = 1002
Score = 46.2 bits (108), Expect = 2e-06
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +1
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W ++PLK + AWRLI+ R+ K NL R + +N +C E A HLF +CP
Sbjct: 439 LWQLKIPLKATTFAWRLIKERIPTKGNLW-RRRVQLNNLMCPFCNRQEEEASHLFFNCPR 615
Query: 77 FNSQWDLVRSW 87
W +W
Sbjct: 616 ILPLWWESLAW 648
>TC222857
Length = 657
Score = 45.8 bits (107), Expect = 3e-06
Identities = 30/102 (29%), Positives = 50/102 (48%), Gaps = 2/102 (1%)
Frame = -3
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLE-IAQHLFLSCP 75
+W ++P K + AWRL+ +RL K NL R D L C +E A H+F+ C
Sbjct: 613 LWKIKIPSKFLMFAWRLLWDRLPTKANLRARQVQISD--LTCPFCRRVEETASHMFIHCI 440
Query: 76 CFNSQWDLVRSWLDICSADPYYLQKHDIQFAYL-SGSLQARR 116
W +W+++ P+ + H +QF+ L +++RR
Sbjct: 439 KTQPIWWETMNWINMQGPLPWSITDHFMQFSSLKEAGIRSRR 314
>TC221865
Length = 1045
Score = 45.8 bits (107), Expect = 3e-06
Identities = 29/91 (31%), Positives = 45/91 (48%)
Frame = -3
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW ++P K +I A RL+++RL K+NL R + + LC+ E A HLF SC
Sbjct: 557 IWKLKIPAKAAIFA*RLVKDRLPTKNNLR-RRQVQLNGTLCLFCRNYEEEASHLFFSCTK 381
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQFAY 107
W SW++ A + H +Q ++
Sbjct: 380 TQPVWWESLSWINTSGAFSANPRHHFLQHSF 288
>CA853414
Length = 460
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 12/28 (42%), Positives = 20/28 (70%)
Frame = -1
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNL 44
+W ++P KV +L WR ++NRL +DN+
Sbjct: 430 LWRLRIPNKVGMLLWRALKNRLPTRDNI 347
Score = 30.4 bits (67), Expect(2) = 3e-06
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 2/39 (5%)
Frame = -2
Query: 65 EIAQHLFLSCPCFNSQWDLVRSW--LDICSADPYYLQKH 101
E QHLFLSC ++ W+ SW L+ + +P L+ H
Sbjct: 282 ESVQHLFLSCGVVSNIWNKCYSWISLNFGTVNPAMLEGH 166
>TC231904 similar to GB|AAL25568.1|16648753|AY058152 AT5g16150/T21H19_70
{Arabidopsis thaliana;} , partial (17%)
Length = 903
Score = 44.3 bits (103), Expect = 8e-06
Identities = 28/78 (35%), Positives = 37/78 (46%)
Frame = +1
Query: 27 SILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPCFNSQWDLVRS 86
+I+AWRLIR+RL K NL R + + LC E A HLF C W +S
Sbjct: 271 TIVAWRLIRDRLPTKSNLR-RRQIDISDSLCPFCSIKDETASHLFFECSKIQHLWWESQS 447
Query: 87 WLDICSADPYYLQKHDIQ 104
W+ A P + H +Q
Sbjct: 448 WIGTSGAYPINPRHHFLQ 501
>TC213899
Length = 497
Score = 43.9 bits (102), Expect = 1e-05
Identities = 26/88 (29%), Positives = 43/88 (48%)
Frame = +3
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W +VP K++ AWRL+++RL + NL R + C E A HLF C
Sbjct: 69 LWKLKVP*KIAAFAWRLLKDRLPTRINL*KR-QIEMVESSCPFCSLVEESAGHLFFQCSK 245
Query: 77 FNSQWDLVRSWLDICSADPYYLQKHDIQ 104
W SW+++ P++ ++H +Q
Sbjct: 246 IIQVWWESLSWVNLVGVFPHHPRRHFLQ 329
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.139 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,226,478
Number of Sequences: 63676
Number of extensions: 118655
Number of successful extensions: 788
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of query: 120
length of database: 12,639,632
effective HSP length: 96
effective length of query: 24
effective length of database: 6,526,736
effective search space: 156641664
effective search space used: 156641664
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC144929.2