BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144807.2 + phase: 0
(239 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC206799 similar to UP|Q93Z44 (Q93Z44) F25I18.1/F25I18.1 (Expres... 360 e-100
TC206800 similar to UP|Q93Z44 (Q93Z44) F25I18.1/F25I18.1 (Expres... 159 1e-39
AW704082 similar to GP|16648738|gb| F25I18.1/F25I18.1 {Arabidops... 98 4e-21
AW620353 homologue to GP|16648738|gb| F25I18.1/F25I18.1 {Arabido... 98 4e-21
TC217553 37 0.010
TC216032 similar to UP|MTR3_YEAST (P48240) Exosome complex exonu... 33 0.15
CF921646 33 0.15
TC207845 similar to UP|O48587 (O48587) Dreg-2 like protein, part... 29 1.7
TC204501 29 2.2
TC220000 weakly similar to UP|O95199 (O95199) RCC1-like G exchan... 29 2.2
TC204916 similar to UP|Q8H0H0 (Q8H0H0) Myb-like protein, partial... 28 2.8
TC229808 similar to UP|Q6K832 (Q6K832) Lipase class 3 protein-li... 28 2.8
TC225746 28 2.8
TC215244 similar to UP|Q9SQL0 (Q9SQL0) Jasmonic acid 2, partial ... 27 6.3
BM953966 weakly similar to GP|15912257|gb| At2g38740/T6A23.6 {Ar... 27 8.3
TC223862 similar to UP|Q8P3R2 (Q8P3R2) Fatty acyl CoA synthetase... 27 8.3
TC218003 27 8.3
TC221200 similar to UP|Q84J75 (Q84J75) At5g12210 (At4g26580), pa... 27 8.3
>TC206799 similar to UP|Q93Z44 (Q93Z44) F25I18.1/F25I18.1 (Expressed
protein), partial (81%)
Length = 1145
Score = 360 bits (925), Expect = e-100
Identities = 173/216 (80%), Positives = 194/216 (89%)
Frame = +1
Query: 24 KTRLRGVVFDMDGTLTVPVIDFPSMYKAVLGDDEYLRVKASNPVGIDILKLIDHWSPLQQ 83
KTRLRGVVFDMDGTLTVPVIDFP+MY+AVLGD+EYLR+KA NP GIDIL ID W P +Q
Sbjct: 70 KTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGDEEYLRLKAENPSGIDILGHIDGWPPHKQ 249
Query: 84 RQAYDTIAHFEKQALDHLQIMPGAADLCNVLDSKKIRRGLITRNMKSAVDLFHQRFGITF 143
R+A+D IA E+Q L+ LQIMPG A+LC +LDSKKIRRGLITRN KSAVDLFH+RFGITF
Sbjct: 250 RKAFDAIAEVERQGLERLQIMPGCAELCAMLDSKKIRRGLITRNTKSAVDLFHERFGITF 429
Query: 144 SPALSREFRPYKPDPAPLLHICSLWEVQPNEVIMVGDSLKDDIACGGRAGAHTCLLDQTG 203
SPALSREFRPYKPDP PLLHICSLWEVQPNEVIM+GDSLKDD+ CG +AGA TCLLDQTG
Sbjct: 430 SPALSREFRPYKPDPGPLLHICSLWEVQPNEVIMIGDSLKDDVPCGRQAGAFTCLLDQTG 609
Query: 204 RYDSPEYANVDFKPDFKVTSLAEVYSILETNFELSP 239
YDSPEYA+V+FKPDFKVTSL EV+S+L+ NF+LSP
Sbjct: 610 VYDSPEYADVEFKPDFKVTSLDEVHSVLKENFDLSP 717
>TC206800 similar to UP|Q93Z44 (Q93Z44) F25I18.1/F25I18.1 (Expressed
protein), partial (44%)
Length = 445
Score = 159 bits (401), Expect = 1e-39
Identities = 87/129 (67%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
Frame = +3
Query: 1 MPLLSST--KAFLLFPRIMS---SHLTP--KTRLRGVVFDMDGTLTVPVIDFPSMYKAVL 53
MPLL S KAF+L S SH P KTRLRGVVFDMDGTLTVPVIDFP+MY+AVL
Sbjct: 57 MPLLVSNCAKAFILSTLPQSKRMSHHAPGVKTRLRGVVFDMDGTLTVPVIDFPAMYRAVL 236
Query: 54 GDDEYLRVKASNPVGIDILKLIDHWSPLQQRQAYDTIAHFEKQALDHLQIMPGAADLCNV 113
GD+EYLR+KA NP GIDIL I+ W P +QR+AYD IA E+Q L+ LQIMPG A+LC +
Sbjct: 237 GDEEYLRLKAENPSGIDILGHIEGWPPHKQRKAYDAIAEVERQGLERLQIMPGCAELCAM 416
Query: 114 LDSKKIRRG 122
LDSKKIRRG
Sbjct: 417 LDSKKIRRG 443
>AW704082 similar to GP|16648738|gb| F25I18.1/F25I18.1 {Arabidopsis
thaliana}, partial (19%)
Length = 367
Score = 97.8 bits (242), Expect = 4e-21
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = +2
Query: 141 ITFSPALSREFRPYKPDPAPLLHICSLWEVQPNEVIMVGDSLKDDIA 187
ITFSPALSREFRPYKPDP PLLHICSLWEVQPNEVIM+GDSLKDD++
Sbjct: 41 ITFSPALSREFRPYKPDPGPLLHICSLWEVQPNEVIMIGDSLKDDVS 181
>AW620353 homologue to GP|16648738|gb| F25I18.1/F25I18.1 {Arabidopsis
thaliana}, partial (13%)
Length = 241
Score = 97.8 bits (242), Expect = 4e-21
Identities = 52/80 (65%), Positives = 57/80 (71%)
Frame = +2
Query: 25 TRLRGVVFDMDGTLTVPVIDFPSMYKAVLGDDEYLRVKASNPVGIDILKLIDHWSPLQQR 84
TRLRGVVFDMD TLT PVIDF +MY AVLGD EYLR+ A NP GI IL I W P +QR
Sbjct: 2 TRLRGVVFDMDCTLTAPVIDFAAMYWAVLGD*EYLRLSA*NPSGIHILGHIHGWPPHKQR 181
Query: 85 QAYDTIAHFEKQALDHLQIM 104
+D IA E+Q L LQIM
Sbjct: 182 TGFDAIAEVERQGLKRLQIM 241
>TC217553
Length = 1150
Score = 36.6 bits (83), Expect = 0.010
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 146 ALSREFRPYKPDPAPLLHICSLWEVQPNEVIMVGDSLKDDIACGGRAGAHTCL 198
A+S E KP+P L C L +V+P + + VGD ++DI AG L
Sbjct: 774 AVSAEVAAEKPNPTIFLKACELLDVKPEDAVHVGDDRRNDIWGARDAGCDAWL 932
>TC216032 similar to UP|MTR3_YEAST (P48240) Exosome complex exonuclease MTR3
(mRNA transport regulator 3) , partial (6%)
Length = 1014
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 155 KPDPAPLLHICSLWEVQPNEVIMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEYANVD 214
KPDPA L S V+P+ ++V DS +A TC++ ++G ++ N D
Sbjct: 376 KPDPAIYLLAASTLNVEPSRCVVVEDSAIG--LAAAKAAGMTCIVTKSGYTADEDFLNAD 549
>CF921646
Length = 668
Score = 32.7 bits (73), Expect = 0.15
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 151 FRPYKPDPAPLLHICSLWEVQPNEVIMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEY 210
FR YKP V P + + DS+++ IA G G HT L+ +T +Y
Sbjct: 487 FRDYKPSLDAFKIALDAANVDPRRTLFLDDSVRN-IAAGKEMGLHTVLVGKTEXXQGKDY 663
Query: 211 A 211
A
Sbjct: 664 A 666
>TC207845 similar to UP|O48587 (O48587) Dreg-2 like protein, partial (89%)
Length = 974
Score = 29.3 bits (64), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = +2
Query: 170 VQPNEVIMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEY 210
+ P E + +GDS++ D G H LLD+ D+ E+
Sbjct: 506 IAPEEALHIGDSMRKDYEPAKSIGMHALLLDRFKTPDAVEW 628
>TC204501
Length = 1088
Score = 28.9 bits (63), Expect = 2.2
Identities = 22/70 (31%), Positives = 33/70 (46%), Gaps = 11/70 (15%)
Frame = +2
Query: 153 PY--KPDPAPLLHICSL---------WEVQPNEVIMVGDSLKDDIACGGRAGAHTCLLDQ 201
PY +PD P+L SL V P + + DS+++ IA G G HT L+ +
Sbjct: 482 PYSTRPDEFPILLKPSLDAFKIALDAANVDPRRTLFLDDSVRN-IAAGKEMGLHTVLVGK 658
Query: 202 TGRYDSPEYA 211
T + +YA
Sbjct: 659 TMKSKGADYA 688
>TC220000 weakly similar to UP|O95199 (O95199) RCC1-like G exchanging factor
RLG (Chromosome condensation 1-like), partial (6%)
Length = 985
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 169 EVQPNEVIMVGDSLKDDIACGGRAGAHTCLLDQTG 203
E+ P V+ + D+ACG G HTC L Q G
Sbjct: 127 ELLPRRVVTLDGIFIKDVACG---GVHTCALTQGG 222
>TC204916 similar to UP|Q8H0H0 (Q8H0H0) Myb-like protein, partial (51%)
Length = 1505
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/37 (45%), Positives = 22/37 (58%), Gaps = 7/37 (18%)
Frame = -3
Query: 178 VGDSLKDDI-ACGGRA------GAHTCLLDQTGRYDS 207
VG SL+DD+ + GGR G +TC D TG+ DS
Sbjct: 639 VGGSLEDDVVSTGGRTLTVLGTGRNTCEEDATGKLDS 529
>TC229808 similar to UP|Q6K832 (Q6K832) Lipase class 3 protein-like, partial
(3%)
Length = 1019
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 212 NVDFKPDFKVTSLAEVYSILETNFE 236
N+D P K ++AE Y ETNFE
Sbjct: 138 NIDSSPSSKSDNIAEAYGSSETNFE 212
>TC225746
Length = 1158
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 170 VQPNEVIMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEYA 211
V P + + DS+++ IA G G HT L+ +T + +YA
Sbjct: 579 VDPRRTLFLDDSVRN-IAAGKEMGLHTVLVGKTEKSKGADYA 701
>TC215244 similar to UP|Q9SQL0 (Q9SQL0) Jasmonic acid 2, partial (57%)
Length = 1463
Score = 27.3 bits (59), Expect = 6.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 147 LSREFRPYKPDPAPLLHICS 166
L R FRPYKP + + HIC+
Sbjct: 1336 LGRSFRPYKPLLSHMNHICT 1395
>BM953966 weakly similar to GP|15912257|gb| At2g38740/T6A23.6 {Arabidopsis
thaliana}, partial (34%)
Length = 421
Score = 26.9 bits (58), Expect = 8.3
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Frame = +2
Query: 3 LLSSTKAFLLFPRIMSSHLTPKTRL---RGVVFDMDGTL 38
+L + FL FP +S ++ T L V+FD+DGTL
Sbjct: 83 ILIINQTFLSFPSCCASSMSSLTSLAPLEAVLFDVDGTL 199
>TC223862 similar to UP|Q8P3R2 (Q8P3R2) Fatty acyl CoA synthetase, partial
(6%)
Length = 512
Score = 26.9 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = +3
Query: 10 FLLFPRIMSSHLTPKT 25
FLL+P I+ SH+TP T
Sbjct: 54 FLLYPMILQSHVTPTT 101
>TC218003
Length = 797
Score = 26.9 bits (58), Expect = 8.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 199 LDQTGRYDSPEYANVDFKPDFKVTSLAEVYS 229
LD TGR D PE F PD +++ E YS
Sbjct: 218 LDSTGRIDDPETPGYLFSPD--ISAAIEKYS 304
>TC221200 similar to UP|Q84J75 (Q84J75) At5g12210 (At4g26580), partial (95%)
Length = 1173
Score = 26.9 bits (58), Expect = 8.3
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Frame = +1
Query: 113 VLDSKKIRRGLITRNMKSAVDLFHQRFGITFSPALSREFRPYKP-DPAPLLHI 164
+LD + G I+ AVD+FH FG+ L E+ KP DPA L +
Sbjct: 757 ILDCQDTENGGISDRPDDAVDVFHTFFGVAGLSLL--EYPGLKPVDPAYALPV 909
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,434,409
Number of Sequences: 63676
Number of extensions: 147579
Number of successful extensions: 580
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of query: 239
length of database: 12,639,632
effective HSP length: 94
effective length of query: 145
effective length of database: 6,654,088
effective search space: 964842760
effective search space used: 964842760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144807.2