Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144806.10 + phase: 0 
         (407 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC218019 similar to UP|Q6NPT7 (Q6NPT7) At1g65040, partial (20%)       257  8e-69
TC226342 homologue to UP|NPM2_MOUSE (Q80W85) Nucleoplasmin 2, pa...    63  3e-10
TC230475                                                               62  4e-10
TC229475 similar to UP|Q944Q9 (Q944Q9) AT4g31450/F3L17_20, parti...    56  3e-08
TC229684 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (72%)        55  7e-08
TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partia...    54  1e-07
TC215461 weakly similar to UP|Q6Z303 (Q6Z303) Zinc finger-like, ...    53  3e-07
TC215460 similar to UP|O22197 (O22197) Expressed protein (At2g40...    51  8e-07
TC220950 similar to UP|Q9LS98 (Q9LS98) Similarity to RING zinc f...    50  1e-06
AW279542 similar to GP|28558782|gb| RING/C3HC4/PHD zinc finger-l...    50  1e-06
TC210298 weakly similar to UP|Q9FJH4 (Q9FJH4) Similarity to ring...    50  2e-06
TC215462 similar to UP|O22197 (O22197) Expressed protein (At2g40...    50  2e-06
TC232542                                                               50  2e-06
TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146...    50  2e-06
TC234435 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A...    50  2e-06
TC227115 weakly similar to UP|Q6ZCW1 (Q6ZCW1) Zinc finger protei...    50  2e-06
TC228035 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A...    49  3e-06
TC227116 similar to UP|WAS2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndr...    49  3e-06
TC228034 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A...    49  3e-06
TC208407 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finge...    49  5e-06

>TC218019 similar to UP|Q6NPT7 (Q6NPT7) At1g65040, partial (20%)
          Length = 1162

 Score =  257 bits (656), Expect = 8e-69
 Identities = 127/154 (82%), Positives = 137/154 (88%), Gaps = 3/154 (1%)
 Frame = +3

Query: 252 TFRNFKVRISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLICGHLF 311
           TFRNFKVR++DY+RYRKITSNMNDRFPDATPEELN++D TCIICREEMTTAKKLICGHLF
Sbjct: 3   TFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLF 182

Query: 312 HVHCLRSWLERQHTCPTCRALVVPSENGPTATGGQQRPQSDANRQ---GEGTGSSAQTEV 368
           HVHCLRSWLERQHTCPTCRALVVP ENG TA  GQQ  QSDA++Q   G G+GS+AQTE 
Sbjct: 183 HVHCLRSWLERQHTCPTCRALVVPPENGTTAAAGQQGSQSDAHQQGTTGTGSGSTAQTE- 359

Query: 369 GDGVARDNLSRHQARLQAAAAAASIYEKSYVYPS 402
               A D+LSRHQARLQAAAAAASIYEKSYVYPS
Sbjct: 360 ----ATDSLSRHQARLQAAAAAASIYEKSYVYPS 449


>TC226342 homologue to UP|NPM2_MOUSE (Q80W85) Nucleoplasmin 2, partial (8%)
          Length = 1326

 Score = 62.8 bits (151), Expect = 3e-10
 Identities = 44/128 (34%), Positives = 64/128 (49%), Gaps = 4/128 (3%)
 Frame = +3

Query: 214 FYLELVRDLLHLSMYMCFFLAIFINYGVPLH-LIRELYETFRNFKV--RISDYLRYRKIT 270
           + L L R LL   ++  FFL    +YG     L   LY TF+   V  ++  ++   K  
Sbjct: 588 YTLLLYRALLPTPVWYRFFLNK--DYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKAL 761

Query: 271 SNMNDRFP-DATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTC 329
           S     +   AT E++N+    C IC+E+M     L C H+F   C+  W ER+ TCP C
Sbjct: 762 SKKEVHYGVHATTEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLC 941

Query: 330 RALVVPSE 337
           RALV P++
Sbjct: 942 RALVKPAD 965


>TC230475 
          Length = 528

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 44/128 (34%), Positives = 63/128 (48%), Gaps = 4/128 (3%)
 Frame = +3

Query: 214 FYLELVRDLLHLSMYMCFFLAIFINYGVPLH-LIRELYETFRNFKV--RISDYLRYRKIT 270
           + L L R LL   ++  FFL     YG     L+  LY TF+   V  ++  +    K  
Sbjct: 57  YLLLLYRALLPTPVWYRFFLNK--EYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKAL 230

Query: 271 SNMNDRFPD-ATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTC 329
           S     +   AT E++N+    C IC+E+M     L C H+F   C+  W ER+ TCP C
Sbjct: 231 SRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLC 410

Query: 330 RALVVPSE 337
           RALV P++
Sbjct: 411 RALVKPAD 434


>TC229475 similar to UP|Q944Q9 (Q944Q9) AT4g31450/F3L17_20, partial (21%)
          Length = 741

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 23/59 (38%), Positives = 36/59 (60%), Gaps = 3/59 (5%)
 Frame = +2

Query: 286 NSNDLTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPT 341
           + +D  C IC+EE   A +   L C H +HV C++ WL+ ++ CP C+A V PS + P+
Sbjct: 278 HKDDTKCSICQEEYVAADEVGSLQCEHAYHVACIQQWLQLKNWCPICKASVAPSNSSPS 454


>TC229684 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (72%)
          Length = 502

 Score = 54.7 bits (130), Expect = 7e-08
 Identities = 35/135 (25%), Positives = 56/135 (40%), Gaps = 24/135 (17%)
 Frame = +2

Query: 223 LHLSMYMCFFLAIFINYGVPLHLIRELYETFRNFKVRISDYLRYRKITSNMNDRFP---- 278
           + L +Y  F  +I I + + L L+  L+   R      S  L     T+N    +P    
Sbjct: 98  IQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILPSTTNSQTTYPYPSQ 277

Query: 279 -----------DATP-----EELNSNDLTCIICREEMTTAKKLI----CGHLFHVHCLRS 318
                      D  P     E+L + D  C +C  E    ++L+    C H+FH+ C+ +
Sbjct: 278 PCRLDLAVQFLDKLPRILFDEDLRTGDSVCCVCLGEFELKEELLQIPYCKHVFHISCISN 457

Query: 319 WLERQHTCPTCRALV 333
           WL+   TCP CR  +
Sbjct: 458 WLQSNCTCPLCRCSI 502


>TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial (33%)
          Length = 1315

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
 Frame = +3

Query: 281 TPEELNSNDLTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
           T E L S+   C +C++      TAK++ C H++H  C+  WLE  ++CP CR   +P++
Sbjct: 585 TEELLASDSSQCAVCKDTFELGETAKQIPCKHIYHADCILPWLELHNSCPVCR-YELPTD 761

Query: 338 N-------------GPTATGGQQRPQSDANRQGEGTGSSAQTEVGDGVARDNLSRHQARL 384
           +             G  A G    PQ + N    G+G SA +    G   DN  R + R+
Sbjct: 762 DPDYEQRARRGGSGGAAAAGSGAAPQVNWN-MALGSGGSADSSGSGG--GDNSQRRRFRV 932


>TC215461 weakly similar to UP|Q6Z303 (Q6Z303) Zinc finger-like, partial
           (28%)
          Length = 1453

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
 Frame = +3

Query: 281 TPEELNSNDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
           T E L S D  C +C+E     + A+K+ C H++H  C+  WL   ++CP CR  + P E
Sbjct: 759 THEHLQS-DSHCPVCKERFELGSEARKMPCNHVYHSDCIVPWLVLHNSCPVCRVELPPKE 935

Query: 338 NGPTATGGQQRPQSDANRQGEGTGSSAQTEVGDGVARDNLSRHQAR 383
           +  T++ G++         G G+GS +  ++  G  R+N   +  R
Sbjct: 936 H--TSSRGRR-------IWGNGSGSGSSNDISRG--RENRQMNNGR 1040


>TC215460 similar to UP|O22197 (O22197) Expressed protein (At2g40830)
           (RING-H2 finger protein RHC1a), partial (28%)
          Length = 1222

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
 Frame = +1

Query: 289 DLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATGG 345
           D  C +C+E+    T A+++ C H++H  C+  WL + ++CP CR  + P   G  ++ G
Sbjct: 649 DSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPP--QGQASSRG 822

Query: 346 QQR--PQSDANRQGEGTGSSAQ 365
            Q    ++D+N    G+  S++
Sbjct: 823 TQNWGGRNDSNTSSSGSNDSSR 888


>TC220950 similar to UP|Q9LS98 (Q9LS98) Similarity to RING zinc finger
           protein, partial (57%)
          Length = 719

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 25/76 (32%), Positives = 34/76 (43%), Gaps = 4/76 (5%)
 Frame = +2

Query: 285 LNSNDLTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRALVVPSENGP 340
           L S D  C+IC  E T+  K+     C H FHV C+  WL    +CP CR  ++ +    
Sbjct: 218 LPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPKCRQCLIETCQKI 397

Query: 341 TATGGQQRPQSDANRQ 356
                QQ   S   +Q
Sbjct: 398 VGCSTQQASSSQQQQQ 445


>AW279542 similar to GP|28558782|gb| RING/C3HC4/PHD zinc finger-like protein
           {Cucumis melo}, partial (12%)
          Length = 434

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 30/109 (27%)
 Frame = +3

Query: 290 LTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRA-----------LVV 334
           L C +C  + T    L     C H+FH HC+ SWL    TCP CRA           + V
Sbjct: 42  LECAVCLTDFTHKDSLRLLPKCNHVFHPHCIDSWLTSHVTCPVCRANLSQESSCHVSITV 221

Query: 335 P--SENG-----------PTATGGQQRPQSDANRQ--GEGTGSSAQTEV 368
           P   E G             AT  +QRP +D N+   G+ T +S  T++
Sbjct: 222 PPHGEEGSLGNMTTTTTTTEATQVEQRPSNDINQDCVGDPTSTSDTTKI 368


>TC210298 weakly similar to UP|Q9FJH4 (Q9FJH4) Similarity to ring finger
           protein, partial (11%)
          Length = 823

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = +2

Query: 284 ELNSNDLTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHTCPTCR 330
           E+  +   C+IC+EEM   +   +L C HLFH  C+  WL +++TCP CR
Sbjct: 29  EVRHSGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCR 178


>TC215462 similar to UP|O22197 (O22197) Expressed protein (At2g40830)
           (RING-H2 finger protein RHC1a), partial (36%)
          Length = 1481

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
 Frame = +3

Query: 288 NDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP----SENGP 340
           +D  C +C+E+    T A+++ C H++H  C+  WL + ++CP CR  + P    S  G 
Sbjct: 741 SDSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQASSRGT 920

Query: 341 TATGGQQRPQSDANRQGEGT 360
            + GG+    S ++   + +
Sbjct: 921 RSWGGRNASNSSSSGSNDSS 980


>TC232542 
          Length = 841

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = +3

Query: 284 ELNSNDLTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHTCPTCR 330
           E+  +   C+IC+EEM   +   +L C HLFH  C+  WL +++TCP CR
Sbjct: 9   EVRHDGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCR 158


>TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146cp
           {Saccharomyces cerevisiae;} , partial (5%)
          Length = 1276

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
 Frame = +2

Query: 283 EELNSNDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENG 339
           E     +L C IC++ +   T   +L C HL+H++C+  WL  +++CP CR   +P+++ 
Sbjct: 494 EHEKHGELVCAICKDVLAPRTEVNQLPCSHLYHINCILPWLSARNSCPLCR-YELPTDDK 670

Query: 340 PTATGGQQRPQSDA--NRQGEGTGSSAQTEVGDG 371
               G Q     +    RQ       + ++V DG
Sbjct: 671 DYEEGKQNIDSRNVIHERQRIDVTDDSYSDVSDG 772


>TC234435 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
           thaliana;} , partial (19%)
          Length = 715

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 22/72 (30%), Positives = 39/72 (53%), Gaps = 3/72 (4%)
 Frame = +2

Query: 286 NSNDLTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTA 342
           + ++LTC IC +++      + L C H FH +C+  WL +Q TCP C+  +       + 
Sbjct: 179 SEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRI------GSV 340

Query: 343 TGGQQRPQSDAN 354
           +GG +  +SD +
Sbjct: 341 SGGNRESESDGS 376


>TC227115 weakly similar to UP|Q6ZCW1 (Q6ZCW1) Zinc finger protein
           family-like, partial (11%)
          Length = 1457

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 27/80 (33%), Positives = 41/80 (50%), Gaps = 7/80 (8%)
 Frame = +2

Query: 281 TPEELNSND----LTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALV 333
           TP  L+S D    + C +C++++T    AK+L C HL+H  C+  W+E   +CP CR  +
Sbjct: 449 TPSLLSSLDPNGVVLCAVCKDQITLNAQAKQLPCQHLYHSDCITPWIELNSSCPLCRFRL 628

Query: 334 VPSENGPTATGGQQRPQSDA 353
              E      GG     +DA
Sbjct: 629 EEEEE----EGGDADADADA 676


>TC228035 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
           thaliana;} , partial (19%)
          Length = 582

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 3/48 (6%)
 Frame = +3

Query: 286 NSNDLTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCR 330
           + +DLTC +C E++      + L C H FH +C+  WL +Q TCP C+
Sbjct: 129 SDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK 272


>TC227116 similar to UP|WAS2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein
           family member 2 (WASP-family protein member 2)
           (Verprolin homology domain-containing protein 2),
           partial (5%)
          Length = 1154

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
 Frame = +2

Query: 281 TPEELNSND----LTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCR 330
           TP  L+S D    + C +C++++T    AK+L C HL+H  C+  WLE   +CP CR
Sbjct: 299 TPSLLSSLDPNGVVRCAVCKDQITPHAEAKQLPCKHLYHSDCITPWLELHASCPLCR 469


>TC228034 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
           thaliana;} , partial (67%)
          Length = 947

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 3/48 (6%)
 Frame = +3

Query: 286 NSNDLTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCR 330
           + +DLTC +C E++      + L C H FH +C+  WL +Q TCP C+
Sbjct: 567 SDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK 710


>TC208407 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
           protein, partial (36%)
          Length = 644

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 28/83 (33%), Positives = 35/83 (41%), Gaps = 14/83 (16%)
 Frame = +2

Query: 284 ELNSNDLTCIICREEM--TTAKKLI--CGHLFHVHCLRSWLERQHTCPTCRALVVPSE-- 337
           +L    L C +C  E   T   +LI  C H+FH  C+  WL    TCP CRA +VP    
Sbjct: 287 KLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGE 466

Query: 338 --------NGPTATGGQQRPQSD 352
                   N P     Q   Q+D
Sbjct: 467 SVHGIPILNAPEDIEAQHEAQND 535


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.327    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,752,451
Number of Sequences: 63676
Number of extensions: 282190
Number of successful extensions: 2596
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 2561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2576
length of query: 407
length of database: 12,639,632
effective HSP length: 99
effective length of query: 308
effective length of database: 6,335,708
effective search space: 1951398064
effective search space used: 1951398064
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)


Medicago: description of AC144806.10