
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144806.10 + phase: 0
(407 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218019 similar to UP|Q6NPT7 (Q6NPT7) At1g65040, partial (20%) 257 8e-69
TC226342 homologue to UP|NPM2_MOUSE (Q80W85) Nucleoplasmin 2, pa... 63 3e-10
TC230475 62 4e-10
TC229475 similar to UP|Q944Q9 (Q944Q9) AT4g31450/F3L17_20, parti... 56 3e-08
TC229684 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (72%) 55 7e-08
TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partia... 54 1e-07
TC215461 weakly similar to UP|Q6Z303 (Q6Z303) Zinc finger-like, ... 53 3e-07
TC215460 similar to UP|O22197 (O22197) Expressed protein (At2g40... 51 8e-07
TC220950 similar to UP|Q9LS98 (Q9LS98) Similarity to RING zinc f... 50 1e-06
AW279542 similar to GP|28558782|gb| RING/C3HC4/PHD zinc finger-l... 50 1e-06
TC210298 weakly similar to UP|Q9FJH4 (Q9FJH4) Similarity to ring... 50 2e-06
TC215462 similar to UP|O22197 (O22197) Expressed protein (At2g40... 50 2e-06
TC232542 50 2e-06
TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146... 50 2e-06
TC234435 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A... 50 2e-06
TC227115 weakly similar to UP|Q6ZCW1 (Q6ZCW1) Zinc finger protei... 50 2e-06
TC228035 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A... 49 3e-06
TC227116 similar to UP|WAS2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndr... 49 3e-06
TC228034 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {A... 49 3e-06
TC208407 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finge... 49 5e-06
>TC218019 similar to UP|Q6NPT7 (Q6NPT7) At1g65040, partial (20%)
Length = 1162
Score = 257 bits (656), Expect = 8e-69
Identities = 127/154 (82%), Positives = 137/154 (88%), Gaps = 3/154 (1%)
Frame = +3
Query: 252 TFRNFKVRISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLICGHLF 311
TFRNFKVR++DY+RYRKITSNMNDRFPDATPEELN++D TCIICREEMTTAKKLICGHLF
Sbjct: 3 TFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLF 182
Query: 312 HVHCLRSWLERQHTCPTCRALVVPSENGPTATGGQQRPQSDANRQ---GEGTGSSAQTEV 368
HVHCLRSWLERQHTCPTCRALVVP ENG TA GQQ QSDA++Q G G+GS+AQTE
Sbjct: 183 HVHCLRSWLERQHTCPTCRALVVPPENGTTAAAGQQGSQSDAHQQGTTGTGSGSTAQTE- 359
Query: 369 GDGVARDNLSRHQARLQAAAAAASIYEKSYVYPS 402
A D+LSRHQARLQAAAAAASIYEKSYVYPS
Sbjct: 360 ----ATDSLSRHQARLQAAAAAASIYEKSYVYPS 449
>TC226342 homologue to UP|NPM2_MOUSE (Q80W85) Nucleoplasmin 2, partial (8%)
Length = 1326
Score = 62.8 bits (151), Expect = 3e-10
Identities = 44/128 (34%), Positives = 64/128 (49%), Gaps = 4/128 (3%)
Frame = +3
Query: 214 FYLELVRDLLHLSMYMCFFLAIFINYGVPLH-LIRELYETFRNFKV--RISDYLRYRKIT 270
+ L L R LL ++ FFL +YG L LY TF+ V ++ ++ K
Sbjct: 588 YTLLLYRALLPTPVWYRFFLNK--DYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKAL 761
Query: 271 SNMNDRFP-DATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTC 329
S + AT E++N+ C IC+E+M L C H+F C+ W ER+ TCP C
Sbjct: 762 SKKEVHYGVHATTEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLC 941
Query: 330 RALVVPSE 337
RALV P++
Sbjct: 942 RALVKPAD 965
>TC230475
Length = 528
Score = 62.4 bits (150), Expect = 4e-10
Identities = 44/128 (34%), Positives = 63/128 (48%), Gaps = 4/128 (3%)
Frame = +3
Query: 214 FYLELVRDLLHLSMYMCFFLAIFINYGVPLH-LIRELYETFRNFKV--RISDYLRYRKIT 270
+ L L R LL ++ FFL YG L+ LY TF+ V ++ + K
Sbjct: 57 YLLLLYRALLPTPVWYRFFLNK--EYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKAL 230
Query: 271 SNMNDRFPD-ATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTC 329
S + AT E++N+ C IC+E+M L C H+F C+ W ER+ TCP C
Sbjct: 231 SRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLC 410
Query: 330 RALVVPSE 337
RALV P++
Sbjct: 411 RALVKPAD 434
>TC229475 similar to UP|Q944Q9 (Q944Q9) AT4g31450/F3L17_20, partial (21%)
Length = 741
Score = 55.8 bits (133), Expect = 3e-08
Identities = 23/59 (38%), Positives = 36/59 (60%), Gaps = 3/59 (5%)
Frame = +2
Query: 286 NSNDLTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPT 341
+ +D C IC+EE A + L C H +HV C++ WL+ ++ CP C+A V PS + P+
Sbjct: 278 HKDDTKCSICQEEYVAADEVGSLQCEHAYHVACIQQWLQLKNWCPICKASVAPSNSSPS 454
>TC229684 similar to UP|Q84TF5 (Q84TF5) At4g24010, partial (72%)
Length = 502
Score = 54.7 bits (130), Expect = 7e-08
Identities = 35/135 (25%), Positives = 56/135 (40%), Gaps = 24/135 (17%)
Frame = +2
Query: 223 LHLSMYMCFFLAIFINYGVPLHLIRELYETFRNFKVRISDYLRYRKITSNMNDRFP---- 278
+ L +Y F +I I + + L L+ L+ R S L T+N +P
Sbjct: 98 IQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILPSTTNSQTTYPYPSQ 277
Query: 279 -----------DATP-----EELNSNDLTCIICREEMTTAKKLI----CGHLFHVHCLRS 318
D P E+L + D C +C E ++L+ C H+FH+ C+ +
Sbjct: 278 PCRLDLAVQFLDKLPRILFDEDLRTGDSVCCVCLGEFELKEELLQIPYCKHVFHISCISN 457
Query: 319 WLERQHTCPTCRALV 333
WL+ TCP CR +
Sbjct: 458 WLQSNCTCPLCRCSI 502
>TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial (33%)
Length = 1315
Score = 54.3 bits (129), Expect = 1e-07
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Frame = +3
Query: 281 TPEELNSNDLTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
T E L S+ C +C++ TAK++ C H++H C+ WLE ++CP CR +P++
Sbjct: 585 TEELLASDSSQCAVCKDTFELGETAKQIPCKHIYHADCILPWLELHNSCPVCR-YELPTD 761
Query: 338 N-------------GPTATGGQQRPQSDANRQGEGTGSSAQTEVGDGVARDNLSRHQARL 384
+ G A G PQ + N G+G SA + G DN R + R+
Sbjct: 762 DPDYEQRARRGGSGGAAAAGSGAAPQVNWN-MALGSGGSADSSGSGG--GDNSQRRRFRV 932
>TC215461 weakly similar to UP|Q6Z303 (Q6Z303) Zinc finger-like, partial
(28%)
Length = 1453
Score = 52.8 bits (125), Expect = 3e-07
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Frame = +3
Query: 281 TPEELNSNDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
T E L S D C +C+E + A+K+ C H++H C+ WL ++CP CR + P E
Sbjct: 759 THEHLQS-DSHCPVCKERFELGSEARKMPCNHVYHSDCIVPWLVLHNSCPVCRVELPPKE 935
Query: 338 NGPTATGGQQRPQSDANRQGEGTGSSAQTEVGDGVARDNLSRHQAR 383
+ T++ G++ G G+GS + ++ G R+N + R
Sbjct: 936 H--TSSRGRR-------IWGNGSGSGSSNDISRG--RENRQMNNGR 1040
>TC215460 similar to UP|O22197 (O22197) Expressed protein (At2g40830)
(RING-H2 finger protein RHC1a), partial (28%)
Length = 1222
Score = 51.2 bits (121), Expect = 8e-07
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +1
Query: 289 DLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATGG 345
D C +C+E+ T A+++ C H++H C+ WL + ++CP CR + P G ++ G
Sbjct: 649 DSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPP--QGQASSRG 822
Query: 346 QQR--PQSDANRQGEGTGSSAQ 365
Q ++D+N G+ S++
Sbjct: 823 TQNWGGRNDSNTSSSGSNDSSR 888
>TC220950 similar to UP|Q9LS98 (Q9LS98) Similarity to RING zinc finger
protein, partial (57%)
Length = 719
Score = 50.4 bits (119), Expect = 1e-06
Identities = 25/76 (32%), Positives = 34/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 285 LNSNDLTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRALVVPSENGP 340
L S D C+IC E T+ K+ C H FHV C+ WL +CP CR ++ +
Sbjct: 218 LPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPKCRQCLIETCQKI 397
Query: 341 TATGGQQRPQSDANRQ 356
QQ S +Q
Sbjct: 398 VGCSTQQASSSQQQQQ 445
>AW279542 similar to GP|28558782|gb| RING/C3HC4/PHD zinc finger-like protein
{Cucumis melo}, partial (12%)
Length = 434
Score = 50.4 bits (119), Expect = 1e-06
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 30/109 (27%)
Frame = +3
Query: 290 LTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRA-----------LVV 334
L C +C + T L C H+FH HC+ SWL TCP CRA + V
Sbjct: 42 LECAVCLTDFTHKDSLRLLPKCNHVFHPHCIDSWLTSHVTCPVCRANLSQESSCHVSITV 221
Query: 335 P--SENG-----------PTATGGQQRPQSDANRQ--GEGTGSSAQTEV 368
P E G AT +QRP +D N+ G+ T +S T++
Sbjct: 222 PPHGEEGSLGNMTTTTTTTEATQVEQRPSNDINQDCVGDPTSTSDTTKI 368
>TC210298 weakly similar to UP|Q9FJH4 (Q9FJH4) Similarity to ring finger
protein, partial (11%)
Length = 823
Score = 50.1 bits (118), Expect = 2e-06
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +2
Query: 284 ELNSNDLTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHTCPTCR 330
E+ + C+IC+EEM + +L C HLFH C+ WL +++TCP CR
Sbjct: 29 EVRHSGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCR 178
>TC215462 similar to UP|O22197 (O22197) Expressed protein (At2g40830)
(RING-H2 finger protein RHC1a), partial (36%)
Length = 1481
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Frame = +3
Query: 288 NDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP----SENGP 340
+D C +C+E+ T A+++ C H++H C+ WL + ++CP CR + P S G
Sbjct: 741 SDSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQASSRGT 920
Query: 341 TATGGQQRPQSDANRQGEGT 360
+ GG+ S ++ + +
Sbjct: 921 RSWGGRNASNSSSSGSNDSS 980
>TC232542
Length = 841
Score = 50.1 bits (118), Expect = 2e-06
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +3
Query: 284 ELNSNDLTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHTCPTCR 330
E+ + C+IC+EEM + +L C HLFH C+ WL +++TCP CR
Sbjct: 9 EVRHDGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCR 158
>TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146cp
{Saccharomyces cerevisiae;} , partial (5%)
Length = 1276
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = +2
Query: 283 EELNSNDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENG 339
E +L C IC++ + T +L C HL+H++C+ WL +++CP CR +P+++
Sbjct: 494 EHEKHGELVCAICKDVLAPRTEVNQLPCSHLYHINCILPWLSARNSCPLCR-YELPTDDK 670
Query: 340 PTATGGQQRPQSDA--NRQGEGTGSSAQTEVGDG 371
G Q + RQ + ++V DG
Sbjct: 671 DYEEGKQNIDSRNVIHERQRIDVTDDSYSDVSDG 772
>TC234435 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
thaliana;} , partial (19%)
Length = 715
Score = 49.7 bits (117), Expect = 2e-06
Identities = 22/72 (30%), Positives = 39/72 (53%), Gaps = 3/72 (4%)
Frame = +2
Query: 286 NSNDLTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTA 342
+ ++LTC IC +++ + L C H FH +C+ WL +Q TCP C+ + +
Sbjct: 179 SEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRI------GSV 340
Query: 343 TGGQQRPQSDAN 354
+GG + +SD +
Sbjct: 341 SGGNRESESDGS 376
>TC227115 weakly similar to UP|Q6ZCW1 (Q6ZCW1) Zinc finger protein
family-like, partial (11%)
Length = 1457
Score = 49.7 bits (117), Expect = 2e-06
Identities = 27/80 (33%), Positives = 41/80 (50%), Gaps = 7/80 (8%)
Frame = +2
Query: 281 TPEELNSND----LTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALV 333
TP L+S D + C +C++++T AK+L C HL+H C+ W+E +CP CR +
Sbjct: 449 TPSLLSSLDPNGVVLCAVCKDQITLNAQAKQLPCQHLYHSDCITPWIELNSSCPLCRFRL 628
Query: 334 VPSENGPTATGGQQRPQSDA 353
E GG +DA
Sbjct: 629 EEEEE----EGGDADADADA 676
>TC228035 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
thaliana;} , partial (19%)
Length = 582
Score = 49.3 bits (116), Expect = 3e-06
Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 3/48 (6%)
Frame = +3
Query: 286 NSNDLTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCR 330
+ +DLTC +C E++ + L C H FH +C+ WL +Q TCP C+
Sbjct: 129 SDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK 272
>TC227116 similar to UP|WAS2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein
family member 2 (WASP-family protein member 2)
(Verprolin homology domain-containing protein 2),
partial (5%)
Length = 1154
Score = 49.3 bits (116), Expect = 3e-06
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Frame = +2
Query: 281 TPEELNSND----LTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCR 330
TP L+S D + C +C++++T AK+L C HL+H C+ WLE +CP CR
Sbjct: 299 TPSLLSSLDPNGVVRCAVCKDQITPHAEAKQLPCKHLYHSDCITPWLELHASCPLCR 469
>TC228034 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
thaliana;} , partial (67%)
Length = 947
Score = 49.3 bits (116), Expect = 3e-06
Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 3/48 (6%)
Frame = +3
Query: 286 NSNDLTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCR 330
+ +DLTC +C E++ + L C H FH +C+ WL +Q TCP C+
Sbjct: 567 SDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCK 710
>TC208407 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (36%)
Length = 644
Score = 48.5 bits (114), Expect = 5e-06
Identities = 28/83 (33%), Positives = 35/83 (41%), Gaps = 14/83 (16%)
Frame = +2
Query: 284 ELNSNDLTCIICREEM--TTAKKLI--CGHLFHVHCLRSWLERQHTCPTCRALVVPSE-- 337
+L L C +C E T +LI C H+FH C+ WL TCP CRA +VP
Sbjct: 287 KLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGE 466
Query: 338 --------NGPTATGGQQRPQSD 352
N P Q Q+D
Sbjct: 467 SVHGIPILNAPEDIEAQHEAQND 535
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,752,451
Number of Sequences: 63676
Number of extensions: 282190
Number of successful extensions: 2596
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 2561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2576
length of query: 407
length of database: 12,639,632
effective HSP length: 99
effective length of query: 308
effective length of database: 6,335,708
effective search space: 1951398064
effective search space used: 1951398064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC144806.10