BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144806.1 + phase: 0
(260 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW508670 144 3e-35
TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), co... 32 0.22
TC218421 similar to GB|AAQ65192.1|34365761|BT010569 At3g08670 {A... 32 0.22
TC206440 30 0.84
TC205786 similar to UP|Q94KL4 (Q94KL4) BEL1-like homeodomain 1, ... 30 1.1
TC234488 weakly similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control... 30 1.4
TC205597 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 29 1.9
TC216016 similar to UP|P93839 (P93839) G/HBF-1, partial (61%) 29 1.9
TC216140 similar to UP|Q9FZK6 (Q9FZK6) F17L21.8, partial (65%) 29 1.9
TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), co... 28 3.2
NP005041 sti (stress inducible protein) 28 4.2
CF921229 28 5.5
TC212313 28 5.5
TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-in... 28 5.5
BU763591 28 5.5
TC230967 similar to UP|Q9ZUM1 (Q9ZUM1) Expressed protein (At2g02... 27 7.1
BF597931 27 7.1
TC204633 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {A... 27 9.3
TC204637 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing prot... 27 9.3
TC212025 similar to UP|Q8H934 (Q8H934) Phototropin, partial (27%) 27 9.3
>AW508670
Length = 442
Score = 144 bits (364), Expect = 3e-35
Identities = 88/135 (65%), Positives = 96/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 1 MDFHTLSRKELQALSKMNKIPANITNVAMADALSALPHVEGLDEILNQREGGDIGTPAVQ 60
MDFHTLSRK+LQAL K NKIPANITNVAMADAL+AL VEGLD+ N E GD+GTP+V
Sbjct: 58 MDFHTLSRKQLQALCKKNKIPANITNVAMADALAALNQVEGLDDFFNPSE-GDVGTPSVN 234
Query: 61 PRTARRTTTQRK-PVKEAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVVPTS 119
RT RT+TQRK ++EAE KV T R VAE VEQEN DAN TPA S
Sbjct: 235 HRTVVRTSTQRKAAIEEAEGLKVKTSTR---RVRVAEEVVEQENKDANAPPITPA---AS 396
Query: 120 RRRVPAVSTRRKKEV 134
RRR AVSTRRKKEV
Sbjct: 397 RRRATAVSTRRKKEV 441
>TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), complete
Length = 2128
Score = 32.3 bits (72), Expect = 0.22
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 112 TPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDV---VSEVQGKATDVAKTPAAAPSS 164
TP TSRR A+ ++++KE+ + +DDV V +++ T K P P +
Sbjct: 838 TPITPTTSRRSKVAIPSKKRKEISSSDSDDDVELDVPDIKRAKTSGKKVPGNVPDA 1005
>TC218421 similar to GB|AAQ65192.1|34365761|BT010569 At3g08670 {Arabidopsis
thaliana;} , partial (46%)
Length = 1256
Score = 32.3 bits (72), Expect = 0.22
Identities = 39/151 (25%), Positives = 61/151 (39%), Gaps = 13/151 (8%)
Frame = +1
Query: 34 SALPHVEGLDEILNQREGG---------DIGTPAVQPRTARRTTTQRKPVKEAESTKVST 84
+A P G+D++L+ EGG GTP V P TT P S ST
Sbjct: 46 TAKPVKSGIDDLLSSTEGGKHDYDWLLTPPGTP-VFPSEGESQTTLAPP---RRSLTRST 213
Query: 85 RVNRGGRGGVAEGEVEQ-ENLDANVDAGTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDV 143
++ R V++ E + A + T + + TS + + S+ R I+ V
Sbjct: 214 STSKTSRLAVSQSENNNPASRPARSSSVTRSSISTSHSQYSSYSSNRHSSSILNTSSASV 393
Query: 144 VSEVQGKATDVAKTPAA---APSSRTRAGRS 171
S ++ + + +A PSSR A RS
Sbjct: 394 SSYIRPSSPITRSSSSARPSTPSSRPTASRS 486
>TC206440
Length = 855
Score = 30.4 bits (67), Expect = 0.84
Identities = 26/96 (27%), Positives = 41/96 (42%)
Frame = +3
Query: 142 DVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRNKTEISDGTSVQKAYSTRRSVRLVGKSL 201
DV+ V +A D+ KTP A S A ++ + EI SV A + +V +
Sbjct: 18 DVIEAVLNEAADIKKTPEQA-SIDEEAKTELKEEREI----SVPAAVEEKVAVAAIDDVD 182
Query: 202 SKMSLADTEDMESTKNDDVSEEMSVSQNEGGSIETE 237
K A ES++ ++ + QNE + TE
Sbjct: 183 KKEPEAPNVSPESSQEEEFESKRVEEQNEAKAATTE 290
>TC205786 similar to UP|Q94KL4 (Q94KL4) BEL1-like homeodomain 1, partial (40%)
Length = 2662
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 209 TEDMESTKNDDVSEEMSVSQNEGGSIETE 237
+ED S N+D S +MS Q++G S ETE
Sbjct: 1592 SEDKSSKSNEDSSSKMSAPQDKGPSNETE 1678
>TC234488 weakly similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn
(Crooked neck) protein-like, partial (12%)
Length = 503
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 155 AKTPAAAPSSRTRAGRSVRNKTEISDGTSV 184
+ TP+++ S+ +R G+S+R + + DGTSV
Sbjct: 218 SSTPSSSTSTISRRGKSLRTYSSVFDGTSV 307
>TC205597 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (30%)
Length = 1417
Score = 29.3 bits (64), Expect = 1.9
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Frame = +3
Query: 51 GGDIGTPAVQPRTARRTTTQRKP----VKEAESTKVSTRVNRGGRGGVAEGEVEQENLDA 106
GGD+ +P +A+ T +RKP V A K RV G EGE + +
Sbjct: 348 GGDLVSPKENMASAKENTKKRKPQNSKVVAASDNKQDKRVKASGE----EGESKVTEQTS 515
Query: 107 NVDAGTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEV---QGKATD 153
N + + A +R A +++ + ++++ V +G+ATD
Sbjct: 516 NKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATD 665
>TC216016 similar to UP|P93839 (P93839) G/HBF-1, partial (61%)
Length = 1764
Score = 29.3 bits (64), Expect = 1.9
Identities = 24/102 (23%), Positives = 43/102 (41%), Gaps = 1/102 (0%)
Frame = +3
Query: 32 ALSALPHVEGLDEILN-QREGGDIGTPAVQPRTARRTTTQRKPVKEAESTKVSTRVNRGG 90
A + + GL +L+ E +G P + + PV+E + + + G
Sbjct: 960 AEETVKRITGLSPMLHAMTEMSSLGMPLFDESPSETSADAAVPVQEDPNHHLCQPTSNNG 1139
Query: 91 RGGVAEGEVEQENLDANVDAGTPAVVPTSRRRVPAVSTRRKK 132
GG++ E Q+N+ A V G TS RV ++ +K+
Sbjct: 1140 LGGISSIETVQQNV-AAVVGGNKMGRTTSLHRVASLEHLQKR 1262
>TC216140 similar to UP|Q9FZK6 (Q9FZK6) F17L21.8, partial (65%)
Length = 734
Score = 29.3 bits (64), Expect = 1.9
Identities = 21/72 (29%), Positives = 26/72 (35%)
Frame = -1
Query: 110 AGTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAG 169
A TPA+ PT+RRR+P + A D P A P RT
Sbjct: 230 ASTPAIFPTARRRIPPA--------------------ISDPARDAVTPPTAEPRQRT--- 120
Query: 170 RSVRNKTEISDG 181
TE S+G
Sbjct: 119 ---STTTEASEG 93
>TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), complete
Length = 2043
Score = 28.5 bits (62), Expect = 3.2
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Frame = +1
Query: 112 TPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDV---VSEVQGKATDVAKTPAAAPSS 164
TP TSRR A+ ++++KE+ + + DV VS + T K P P +
Sbjct: 814 TPITPATSRRSKVAIPSKKRKEISSSDSDKDVELDVSTSKKAKTSGKKVPGNVPDA 981
>NP005041 sti (stress inducible protein)
Length = 1710
Score = 28.1 bits (61), Expect = 4.2
Identities = 21/78 (26%), Positives = 39/78 (49%), Gaps = 2/78 (2%)
Frame = +1
Query: 155 AKTPAAAPSSRTRAGRSVRNKTEISDGTS-VQKAYSTRRSVRLVGKSLS-KMSLADTEDM 212
A++P P + R ++ +G VQ A+ +R + +G L+ K+ + ++
Sbjct: 406 ARSPPTPPHVQPPGPRVRQDHAGHPEGPQQVQPAFEYQRVMHAIGVLLNVKIQTPNHDEN 585
Query: 213 ESTKNDDVSEEMSVSQNE 230
+ +DDVSE+ VSQ E
Sbjct: 586 DHDADDDVSEDEVVSQPE 639
>CF921229
Length = 680
Score = 27.7 bits (60), Expect = 5.5
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Frame = -3
Query: 59 VQPRTARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAEG----EVEQENLDANVDAGTPA 114
++ + T ++K ++ E K + G V E EV +E +A V
Sbjct: 660 IEEKKEVEVTEEKKEIEVTEEKKEAEVKEEKKEGEVTEEKKEVEVTEEKKEAEVIVEEKK 481
Query: 115 VVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDV 154
V + + T KKEV VIE++ + + K +V
Sbjct: 480 EVEVTEEKKEVEVTEGKKEVEVIEEKKETEVTEEKKEVEV 361
>TC212313
Length = 700
Score = 27.7 bits (60), Expect = 5.5
Identities = 30/127 (23%), Positives = 54/127 (41%), Gaps = 1/127 (0%)
Frame = +2
Query: 114 AVVPTSRRRVPAVS-TRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGRSV 172
A + T RVP++ T + V E ++ V + Q + D+ + R + G
Sbjct: 149 APIVTDPTRVPSMDLTAFEASSFVEEVLENSVEDAQSSSDDLVRNEE---EERVQEG--- 310
Query: 173 RNKTEISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTEDMESTKNDDVSEEMSVSQNEGG 232
E+ + ++ RRSV L S +K+SLA + + + S+ V N G
Sbjct: 311 ----EVCENENLAVTVQPRRSVSLDSSSAAKISLALATVVSGDSHGNHSKR--VVGNVNG 472
Query: 233 SIETENG 239
++ T+ G
Sbjct: 473 NLSTKGG 493
>TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-infected
erythrocyte surface antigen, partial (5%)
Length = 858
Score = 27.7 bits (60), Expect = 5.5
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Frame = +1
Query: 59 VQPRTARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAEG----EVEQENLDANVDAGTPA 114
++ + T ++K ++ E K + G V E EV +E +A V
Sbjct: 526 IEEKKEVEVTEEKKEIEVTEEKKEAEVKEEKKEGEVTEEKKEVEVTEEKKEAEVIVEEKK 705
Query: 115 VVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDV 154
V + + T KKEV VIE++ + + K +V
Sbjct: 706 EVEVTEEKKEVEVTEGKKEVEVIEEKKETEVTEEKKEVEV 825
>BU763591
Length = 389
Score = 27.7 bits (60), Expect = 5.5
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Frame = -1
Query: 59 VQPRTARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAEG----EVEQENLDANVDAGTPA 114
++ + T ++K ++ E K + G V E EV +E +A V
Sbjct: 332 IEEKKEVEVTEEKKEIEVTEEKKEAEVKEEKKEGEVTEEKKEVEVTEEKKEAEVIVEEKK 153
Query: 115 VVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDV 154
V + + T KKEV VIE++ + + K +V
Sbjct: 152 EVEVTEEKKEVEVTEGKKEVEVIEEKKETEVTEEKKEVEV 33
>TC230967 similar to UP|Q9ZUM1 (Q9ZUM1) Expressed protein (At2g02170/F5O4.6),
partial (32%)
Length = 790
Score = 27.3 bits (59), Expect = 7.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 158 PAAAPSSRTRAGRSVRNKTEISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTEDMESTKN 217
P A+P+S S +++ + + TRR + ++G L KMS+A E
Sbjct: 79 PRASPASTLTDLHSDNLNLNMNELSEKELQMKTRREIMVLGTQLGKMSIAAWASKEEEDK 258
Query: 218 D 218
D
Sbjct: 259 D 261
>BF597931
Length = 407
Score = 27.3 bits (59), Expect = 7.1
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 4/44 (9%)
Frame = +2
Query: 55 GTPAVQPRTARRTTTQRKPVKE----AESTKVSTRVNRGGRGGV 94
GTP+VQ + R R V+ + ++ S V+RGGRGGV
Sbjct: 29 GTPSVQ*QPFRSCVD*RAVVRRCRRRSSASSSSLSVSRGGRGGV 160
>TC204633 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {Arabidopsis
thaliana;} , partial (38%)
Length = 741
Score = 26.9 bits (58), Expect = 9.3
Identities = 21/49 (42%), Positives = 29/49 (58%), Gaps = 3/49 (6%)
Frame = -2
Query: 165 RTRAGRSVRNKT---EISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTE 210
R+R+GR RN+ EI++ T QKAY+ R R GKS S+ L + E
Sbjct: 227 RSRSGR--RNELQVQEIAEETLAQKAYN*RD*ERERGKSGSRRRLVNKE 87
>TC204637 similar to UP|Q7F8R0 (Q7F8R0) KH domain-containing protein-like,
partial (21%)
Length = 503
Score = 26.9 bits (58), Expect = 9.3
Identities = 21/49 (42%), Positives = 29/49 (58%), Gaps = 3/49 (6%)
Frame = -3
Query: 165 RTRAGRSVRNKT---EISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTE 210
R+R+GR RN+ EI++ T QKAY+ R R GKS S+ L + E
Sbjct: 192 RSRSGR--RNELQVQEIAEETLAQKAYN*RD*ERERGKSGSRRRLVNKE 52
>TC212025 similar to UP|Q8H934 (Q8H934) Phototropin, partial (27%)
Length = 978
Score = 26.9 bits (58), Expect = 9.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 149 GKATDVAKTPAAAPSSRTRAGRSVRNKTEISDG 181
G+ + AK AAA SSR + S R + SDG
Sbjct: 103 GEEPNAAKLAAAASSSRKNSQNSARTSGDSSDG 201
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.126 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,256,118
Number of Sequences: 63676
Number of extensions: 66031
Number of successful extensions: 485
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of query: 260
length of database: 12,639,632
effective HSP length: 95
effective length of query: 165
effective length of database: 6,590,412
effective search space: 1087417980
effective search space used: 1087417980
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144806.1