TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.21 - phase: 0 
         (471 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC222068 similar to GB|CAA80380.1|1673365|ATTRNASYA mitochondria...   130  1e-30
BG155974 similar to GP|1673365|emb mitochondrial tRNA-Ala synthe...   122  3e-28
AI495972 similar to PIR|D96538|D965 cytosolic tRNA-Ala synthetas...    82  5e-20
BF069523 similar to GP|4689382|gb|A chlorophyll a/b binding prot...    30  1.8
NP005150 cytokinin induced message                                     30  1.8
TC211784                                                               30  1.8
TC215036 similar to PIR|T06397|T06397 isoprenylated protein FP6 ...    29  4.0
TC203437 homologue to UP|RCA_CUCSA (Q01587) Ribulose bisphosphat...    29  5.2
TC220518                                                               28  6.8
TC213750 similar to UP|Q9W3W8 (Q9W3W8) CG3203-PA (Cg3203-pb) (GM...    28  6.8
BU547384                                                               28  8.8

>TC222068 similar to GB|CAA80380.1|1673365|ATTRNASYA mitochondrial tRNA-Ala
           synthetase {Arabidopsis thaliana;} , partial (19%)
          Length = 600

 Score =  130 bits (328), Expect = 1e-30
 Identities = 67/101 (66%), Positives = 76/101 (74%)
 Frame = +1

Query: 362 LGDVFPELKQNEERIRKMIQVEEESFSRNLFKGIRKFNKAVEHVQGNILSGEATFELSHT 421
           +GDVFPELKQ E  IR +I+ EEESF R L KGI KF  AV  VQGNILSGE  F L  T
Sbjct: 7   MGDVFPELKQQETHIRNIIEEEEESFGRTLIKGIEKFEAAVRQVQGNILSGEEAFVLWDT 186

Query: 422 FGFPLDLTQLMAEEKKFSVDIEGFHRAMKAARERSKTAPKK 462
           +GFPLDLTQLMAEEK   VD++GF  AM+AARERS++A  K
Sbjct: 187 YGFPLDLTQLMAEEKGLVVDVKGFDSAMEAARERSRSAQTK 309


>BG155974 similar to GP|1673365|emb mitochondrial tRNA-Ala synthetase
           {Arabidopsis thaliana}, partial (8%)
          Length = 381

 Score =  122 bits (307), Expect = 3e-28
 Identities = 58/75 (77%), Positives = 64/75 (85%)
 Frame = +1

Query: 1   MPETESIDIEWPAKRVRDTFAKFFEEKNHVHWKSSAVVPLNDPTLLFANAGMNQFKPIFL 60
           MPETE+ D+EWPAKRVRDTF  FF++KNHV+WKSS VVP NDPTLLFANAGMNQFKPIFL
Sbjct: 94  MPETETHDVEWPAKRVRDTFISFFQDKNHVNWKSSPVVPFNDPTLLFANAGMNQFKPIFL 273

Query: 61  GTVDPNTALSKLTRA 75
           GT      LSKL+RA
Sbjct: 274 GTGGS*HCLSKLSRA 318



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 21/30 (70%), Positives = 22/30 (73%)
 Frame = +3

Query: 67  TALSKLTRACNIQKCIRAGGKHNDLDDVGK 96
           T L +     N QKCIRAGGKHNDLDDVGK
Sbjct: 291 TLLEQALSCLNTQKCIRAGGKHNDLDDVGK 380


>AI495972 similar to PIR|D96538|D965 cytosolic tRNA-Ala synthetase [imported]
           - Arabidopsis thaliana, partial (6%)
          Length = 180

 Score = 81.6 bits (200), Expect(2) = 5e-20
 Identities = 36/45 (80%), Positives = 39/45 (86%)
 Frame = +1

Query: 134 LPSDRIYVTYFGGDEKTGLGPDNEARDIWLKFLPPGRVLPFGSKD 178
           + SDRIY TYFGGD+K+GL PD EARDIWLKFLPPGRVLPF  KD
Sbjct: 46  ITSDRIYATYFGGDDKSGLAPDLEARDIWLKFLPPGRVLPFDCKD 180



 Score = 34.3 bits (77), Expect(2) = 5e-20
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 119 EAISWAWELLTEVYNL 134
           EAISWAWELLT+VY L
Sbjct: 2   EAISWAWELLTKVYKL 49


>BF069523 similar to GP|4689382|gb|A chlorophyll a/b binding protein CP29
           {Vigna radiata}, partial (20%)
          Length = 190

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 157 EARDIWLKFLPPGRVLPFGSKDNF 180
           EAR  W K LPPG  L FGS+  F
Sbjct: 156 EARSCWSK*LPPGYSLFFGSRSEF 85


>NP005150 cytokinin induced message
          Length = 834

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = +1

Query: 189 CGPCSEIHFDRIGNRNASSFVNDEDPNCIELWNLVFIQFNREADGSLKSLPAKHVDTGMG 248
           CG  ++ HFD  GN   +  ++ +D N      +       E +   +S+ A HVD+G  
Sbjct: 382 CGSDAQYHFDLSGNAFGAMAISGQDENLRNAGKINIQHRRIECNYPGRSI-AFHVDSGSN 558

Query: 249 FERLTSILQHKNSNYD 264
            E   +++++++ + D
Sbjct: 559 QEYFATLVEYEDGDGD 606


>TC211784 
          Length = 925

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -3

Query: 116 FKEEAISWAWELLTEVYNLPSDRIYVTYF 144
           F E  + W+W +  E YN+ SD  Y ++F
Sbjct: 164 FSEGLLDWSWLIYIEEYNIDSDYSYNSFF 78


>TC215036 similar to PIR|T06397|T06397 isoprenylated protein FP6 - soybean
           (fragment) {Glycine max;} , partial (28%)
          Length = 639

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 12/28 (42%), Positives = 18/28 (63%)
 Frame = +1

Query: 52  MNQFKPIFLGTVDPNTALSKLTRACNIQ 79
           M   K I LG +DP +A+SKL + C+ +
Sbjct: 193 MKDMKMIVLGDIDPVSAVSKLRKCCHTE 276


>TC203437 homologue to UP|RCA_CUCSA (Q01587) Ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase) (RA) , partial (14%)
          Length = 693

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -3

Query: 367 PELKQNEERIRKMIQVEEESFSRNLFKGIRKFNKAVEHVQGNILSGEATFELSHTFGFPL 426
           P+   + ER RK ++ +  +   N  KGI ++N   + V+   L      +L HT+   L
Sbjct: 475 PKEMADHERRRKAMKRQRGAMHTNQQKGIHRYNFESDFVEYGDLDDVILHDLFHTY---L 305

Query: 427 DLT 429
           DLT
Sbjct: 304 DLT 296


>TC220518 
          Length = 458

 Score = 28.5 bits (62), Expect = 6.8
 Identities = 20/76 (26%), Positives = 35/76 (45%)
 Frame = +2

Query: 350 FFNGLVNVVANVLGDVFPELKQNEERIRKMIQVEEESFSRNLFKGIRKFNKAVEHVQGNI 409
           F N ++N+V +VL + F    Q+       + +E    S++L KG+      V+ V    
Sbjct: 50  FCNEVLNIVDDVLDEAFNFFYQDAST---KLNIEGTQRSQDLKKGVDCVRLNVQSVLDKQ 220

Query: 410 LSGEATFELSHTFGFP 425
           L+   ++ L H F  P
Sbjct: 221 LAAWESYILRHCFALP 268


>TC213750 similar to UP|Q9W3W8 (Q9W3W8) CG3203-PA (Cg3203-pb) (GM02242p),
           partial (94%)
          Length = 628

 Score = 28.5 bits (62), Expect = 6.8
 Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 4/80 (5%)
 Frame = +2

Query: 333 LRRAVRYGREVLKAEEGF----FNGLVNVVANVLGDVFPELKQNEERIRKMIQVEEESFS 388
           LRRAVRY + V + +E      FNG V   A        + +  ++    +IQ+ + + S
Sbjct: 194 LRRAVRYLKNVTEKKECVPFRRFNGGVGRCAQAKAWKTTQGRWPKKSAEFLIQLLKNAES 373

Query: 389 RNLFKGIRKFNKAVEHVQGN 408
              +KG+      +EH+Q N
Sbjct: 374 NADYKGLDVDRLVIEHIQVN 433


>BU547384 
          Length = 537

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 94  VGKDTYHHTFFEMLGNWSFGDYFKEEAISWAWELLTEVYNLPSDR 138
           V  D +   F   LG+   GD++  +   W W  LT   +LPS R
Sbjct: 375 VAIDCHMFIFGGRLGSQRLGDFWVLDTDIWQWSELTGFGDLPSPR 509


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,086,062
Number of Sequences: 63676
Number of extensions: 298403
Number of successful extensions: 1248
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of query: 471
length of database: 12,639,632
effective HSP length: 101
effective length of query: 370
effective length of database: 6,208,356
effective search space: 2297091720
effective search space used: 2297091720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)