BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144765.19 - phase: 0
(146 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222369 similar to UP|Q9LT25 (Q9LT25) Similarity to transcripti... 202 6e-53
TC206569 weakly similar to UP|Q9LT25 (Q9LT25) Similarity to tran... 37 0.003
TC228262 similar to UP|Q9MAL4 (Q9MAL4) F27F5.2, partial (4%) 30 0.41
TC211696 homologue to UP|Q9ARC5 (Q9ARC5) Membrane transporter, c... 28 1.2
BU090186 28 1.6
TC226477 weakly similar to UP|Q8GT21 (Q8GT21) Benzoyl coenzyme A... 28 1.6
TC217494 weakly similar to UP|Q8BSY2 (Q8BSY2) Mus musculus 11 da... 28 1.6
TC216378 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F1... 28 2.1
TC216379 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F1... 28 2.1
TC217810 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F1... 27 3.5
BG362748 similar to GP|13277220|em ZF-HD homeobox protein {Flave... 27 4.6
TC206568 weakly similar to UP|Q9LT25 (Q9LT25) Similarity to tran... 27 4.6
BE440825 27 4.6
TC208023 weakly similar to UP|Q8LC07 (Q8LC07) Carnitine racemase... 27 4.6
TC216769 similar to UP|Q8W2K4 (Q8W2K4) Cytochrome b5 reductase i... 26 6.0
TC218303 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, p... 26 6.0
TC217268 similar to UP|Q8VZA5 (Q8VZA5) 3-deoxy-D-manno-octuloson... 26 6.0
BM308593 26 6.0
TC228583 weakly similar to UP|Q9FDV0 (Q9FDV0) SrtT, partial (4%) 26 7.8
>TC222369 similar to UP|Q9LT25 (Q9LT25) Similarity to transcription factor
CA150b, partial (20%)
Length = 631
Score = 202 bits (513), Expect = 6e-53
Identities = 100/110 (90%), Positives = 103/110 (92%)
Frame = +1
Query: 1 MLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKNRAEEERKEKRAAQKA 60
MLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVK RAEEERKEKRAA KA
Sbjct: 238 MLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAALKA 417
Query: 61 AIEGFKQLLDEASEDIDDKTDSHTFRKKWGNDPRFEALDRKEREHLLNER 110
AIEGFK+LLDEASEDI+ TD TFRKKW NDPRFEALDRKE+EHLLNER
Sbjct: 418 AIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNER 567
>TC206569 weakly similar to UP|Q9LT25 (Q9LT25) Similarity to transcription
factor CA150b, partial (19%)
Length = 760
Score = 37.4 bits (85), Expect = 0.003
Identities = 43/161 (26%), Positives = 63/161 (38%), Gaps = 46/161 (28%)
Frame = +3
Query: 1 MLKERGVAPF-SKWEKELPKIVFDPRFKAIPSYSARRSLFEHYV------KNRAEEERKE 53
MLKERG F S+W + + DPR+K + + R LF Y+ ++ AE E K
Sbjct: 9 MLKERGDISFNSRWSRVKENLRDDPRYKCV-RHEDREVLFNEYISELKAAEHAAERETKA 185
Query: 54 KRAAQ------------------------------KAAIEGFKQLLDEASED-----IDD 78
K Q K A+ F+ LL E +D +
Sbjct: 186 KMEEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVSWTES 365
Query: 79 KTDSHTFRKKWGNDPRFEALDRKE--REH--LLNERCHFEF 115
K ++ +P + LD ++ REH +L ERC EF
Sbjct: 366 KPKLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEF 488
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Frame = +3
Query: 9 PFSKWEKELPKIVFDPRFKAI-PSYSA--RRSLFEHYVKNRAEEERKEKRAAQKAAIEGF 65
P W + PK+ D + +A P LF +VK E E R +
Sbjct: 342 PLVSWTESKPKLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEFRVLLAEVLTS- 518
Query: 66 KQLLDEASEDIDD-KTDSH---TFRKKWGNDPRFEALDRKEREHL 106
D AS++ DD KT + T ++ +DPR+ + RKERE L
Sbjct: 519 ----DAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREAL 641
>TC228262 similar to UP|Q9MAL4 (Q9MAL4) F27F5.2, partial (4%)
Length = 657
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 44 KNRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDDKTDSHTFRKKWGNDPRFEALDRKER 103
+ R E+E+KEK ++ + DE D D DSH ++++ + E RK
Sbjct: 84 EKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRH 263
Query: 104 EHLLNE 109
+ +++
Sbjct: 264 QSSIDD 281
>TC211696 homologue to UP|Q9ARC5 (Q9ARC5) Membrane transporter, complete
Length = 1899
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (49%)
Frame = -3
Query: 73 SEDIDDKTDSHTFRKKWGNDPRFEALDRKEREHLLNERCHFEFN 116
SED + D H R K GN P E + L+++R H+E +
Sbjct: 811 SEDKNPHDDMHETRNKEGNPPSSEGSSPSSSDKLIHQR-HYELS 683
>BU090186
Length = 389
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/41 (26%), Positives = 20/41 (47%)
Frame = -1
Query: 100 RKEREHLLNERCHFEFNWTFLNSLNFIFFVCDSHNHHPYHW 140
+ + + L R F W + + + F++ CD+H H HW
Sbjct: 359 KSQTDSALRARQSFRRRW-YSSWIRFLYSRCDAHGHFIRHW 240
>TC226477 weakly similar to UP|Q8GT21 (Q8GT21) Benzoyl coenzyme A: benzyl
alcohol benzoyl transferase, partial (56%)
Length = 1565
Score = 28.1 bits (61), Expect = 1.6
Identities = 30/93 (32%), Positives = 43/93 (45%), Gaps = 6/93 (6%)
Frame = -1
Query: 25 RFKAIPSYSARRSLFE-HYVKNRAEEE----RKEKRAAQKAAIEGFKQLLDEASEDIDDK 79
R + ++ A R L++ H V R E R +R + AA+E ++ E S +DD
Sbjct: 1094 RINILFAHLAARFLYQLHRVLQRFLAEISGARHRRRKREAAAVEPRREGRIELSTRVDDA 915
Query: 80 TDSHTFRKKWGNDPRFEALDRKE-REHLLNERC 111
SH F W + RF A R+HL ERC
Sbjct: 914 HHSHIF--IWRDLKRFRAAAPDV*RQHL--ERC 828
>TC217494 weakly similar to UP|Q8BSY2 (Q8BSY2) Mus musculus 11 days pregnant
adult female ovary and uterus cDNA, RIKEN full-length
enriched library, clone:5031405O05 product:metal
response element binding transcription factor 1, full
insert sequence, partial (3%)
Length = 1045
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 105 HLLNERCHFEFNWTFLNSLNFIFFVCDSHNHHPYHWIT 142
HL C+F F N + +F C N +PY I+
Sbjct: 256 HLQKTACNFRFKLALSNCIPVVFHSCGIINFYPYRNIS 369
>TC216378 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F19K16_11
{Arabidopsis thaliana;} , partial (15%)
Length = 796
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 91 NDPRFEALDRKEREHLLNERCHFEFNW 117
NDP+F+ +D E++ +LNE C NW
Sbjct: 149 NDPKFDHIDINEKQKVLNE-CVEAENW 226
>TC216379 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F19K16_11
{Arabidopsis thaliana;} , partial (53%)
Length = 1759
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 91 NDPRFEALDRKEREHLLNERCHFEFNW 117
NDP+F+ +D E++ +LNE C NW
Sbjct: 1116 NDPKFDHIDINEKQKVLNE-CVEAENW 1193
>TC217810 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F19K16_11
{Arabidopsis thaliana;} , partial (23%)
Length = 1087
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Frame = +3
Query: 32 YSARRSLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDDKTDSHTFRKKW-- 89
++A+ E ++ + E+E K A +E K+ D ++ T+ T +++
Sbjct: 180 FTAKLQEVEDWLYDEGEDETK---GVYIAKLEELKKQGDPIDGRYEEFTERGTIIEQFVY 350
Query: 90 ----------GNDPRFEALDRKEREHLLNE 109
NDPRFE +D E++ ++N+
Sbjct: 351 CINSYRQVAMSNDPRFEHIDINEKQKVINK 440
>BG362748 similar to GP|13277220|em ZF-HD homeobox protein {Flaveria
bidentis}, partial (34%)
Length = 463
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +2
Query: 24 PRFKAIPSYSARRSLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLD-EASEDIDDKTDS 82
P +A S RS F + E + + A + G + D EA D S
Sbjct: 209 PLRRASGSAGEHRSAFRRAQQKAFPNEVQSGAEGEDAQVRGESGVEDSEAGRGFD----S 376
Query: 83 HTFRKKWGNDPRFEALDRKEREHLLNER 110
++ WG R + LD +++HL +R
Sbjct: 377 RVLQRGWGR*KRSQGLDA*QQKHLRQKR 460
>TC206568 weakly similar to UP|Q9LT25 (Q9LT25) Similarity to transcription
factor CA150b, partial (8%)
Length = 783
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +1
Query: 70 DEASEDIDD-KTDSH---TFRKKWGNDPRFEALDRKEREHL 106
D AS++ DD KT + T ++ +DPR+ + RKERE L
Sbjct: 274 DAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREAL 396
>BE440825
Length = 471
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = -3
Query: 63 EGFKQLLDEASEDIDDKTDSHTFRKKWGNDPRFEALDRKEREHLLNERCHF 113
EG+ L+ + K H R++WG P F + RE +L+ RC F
Sbjct: 439 EGYALWLETLGPTLQIKQHLHNRRRRWG--PLFSRVTTVRRE-ILSRRC*F 296
>TC208023 weakly similar to UP|Q8LC07 (Q8LC07) Carnitine racemase like
protein, partial (95%)
Length = 1133
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 100 RKEREHLLNERCHFEFNWTFLNSLNFIFFVCDSHNHHP 137
R+ R L+ RCH +TF F+F + HHP
Sbjct: 215 RRRRRGLVPRRCHASRGYTF-----FLFLIYP*IRHHP 117
>TC216769 similar to UP|Q8W2K4 (Q8W2K4) Cytochrome b5 reductase isoform II,
partial (89%)
Length = 1304
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
Frame = +3
Query: 113 FEFNWTFLNSLNFIFFVCDSHNHHPYH--WITYLDF 146
F+F+ +FL F+F + SH H P+H I +DF
Sbjct: 99 FKFSISFL-IYKFLFSLLPSHTHFPFHSPLIQIMDF 203
>TC218303 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, partial (32%)
Length = 1230
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -2
Query: 91 NDPRFEALDRKEREHLLNERCHFEFNWTFL 120
N P FE +E H+ +CH W L
Sbjct: 623 NQPIFEMPQSRENHHVQCHQCHLHVQWFHL 534
>TC217268 similar to UP|Q8VZA5 (Q8VZA5) 3-deoxy-D-manno-octulosonic acid
transferase-like protein, partial (16%)
Length = 1832
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 101 KEREHLLNERCHFEFNWTFLNSLNFIFFVCDSHNHHPYHWITYLD 145
KER +L + +F S FF CD H+ H+I L+
Sbjct: 152 KERVYLADGLENFRKQLGIYESTTIQFFACDHHSPFDIHFIPTLE 286
>BM308593
Length = 232
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/29 (37%), Positives = 16/29 (54%), Gaps = 1/29 (3%)
Frame = +1
Query: 113 FEFNWT-FLNSLNFIFFVCDSHNHHPYHW 140
F + W+ FLN + F FF+ + PY W
Sbjct: 94 FIYEWSCFLN*IAFRFFISQVNKRFPYAW 180
>TC228583 weakly similar to UP|Q9FDV0 (Q9FDV0) SrtT, partial (4%)
Length = 396
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 111 CHFEFNWTFLNSLNFIFFVCDSHNHHPYH 139
CHF +F S FF CDS H+P +
Sbjct: 198 CHFS---SFSISFYADFFFCDSSQHYPQY 121
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,087,889
Number of Sequences: 63676
Number of extensions: 117327
Number of successful extensions: 976
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of query: 146
length of database: 12,639,632
effective HSP length: 88
effective length of query: 58
effective length of database: 7,036,144
effective search space: 408096352
effective search space used: 408096352
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC144765.19