TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.1 + phase: 0 /pseudo
         (52 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW780793                                                               29  0.59
TC230992 similar to UP|Q944A6 (Q944A6) At1g09020/F7G19_11, parti...    28  0.77
BM085482                                                               28  0.77
TC227592 homologue to GB|BAC42746.1|26451290|AK118120 protein tr...    27  2.9
CD414772 homologue to SP|P14226|PSBO_ Oxygen-evolving enhancer p...    26  3.8
TC210190 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, part...    25  8.5

>AW780793 
          Length = 419

 Score = 28.9 bits (63), Expect = 0.59
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 2   EEANKFWLAYSFRVGFGVRV 21
           EEA +F++AY  R+GF VR+
Sbjct: 162 EEAREFYIAYGRRIGFTVRI 221


>TC230992 similar to UP|Q944A6 (Q944A6) At1g09020/F7G19_11, partial (24%)
          Length = 826

 Score = 28.5 bits (62), Expect = 0.77
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 9   LAYSFRVGFGVRVRFANKREDGSVSSCRMLYEGSVNTW 46
           LA   ++GF   +R  N++E   +S C   YE + +TW
Sbjct: 121 LAKKKKLGF*CLIRRENQKEKVPISHCNRTYEETNSTW 8


>BM085482 
          Length = 415

 Score = 28.5 bits (62), Expect = 0.77
 Identities = 11/37 (29%), Positives = 20/37 (53%)
 Frame = -3

Query: 6   KFWLAYSFRVGFGVRVRFANKREDGSVSSCRMLYEGS 42
           K+W  +S +  FG+ ++F      GS+ +    YEG+
Sbjct: 353 KYWFLFSIKGTFGIFIKFGESFSLGSLLNQSQTYEGN 243


>TC227592 homologue to GB|BAC42746.1|26451290|AK118120 protein transport
           protein subunit - like {Arabidopsis thaliana;} , partial
           (80%)
          Length = 574

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 19  VRVRFANKREDGSVSSCRMLYEGSV 43
           +R+R  N +ED  +  CR ++ G V
Sbjct: 429 MRIRTTNPKEDRKIKRCRQIWSGRV 355


>CD414772 homologue to SP|P14226|PSBO_ Oxygen-evolving enhancer protein 1
           chloroplast precursor (OEE1), partial (28%)
          Length = 580

 Score = 26.2 bits (56), Expect = 3.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 31  SVSSCRMLYEGSVNTWYVKY 50
           ++SSCR+ +EGS N W  ++
Sbjct: 299 AISSCRIRHEGSWNFWTCRF 240


>TC210190 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, partial (65%)
          Length = 866

 Score = 25.0 bits (53), Expect = 8.5
 Identities = 13/29 (44%), Positives = 19/29 (64%), Gaps = 1/29 (3%)
 Frame = +1

Query: 4  ANKFWLAYSFRVGFGVRV-RFANKREDGS 31
          A+ F+ AY+  VGF VRV + +  R DG+
Sbjct: 25 AHAFYNAYATEVGFIVRVSKLSRSRRDGT 111


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,547,236
Number of Sequences: 63676
Number of extensions: 22390
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of query: 52
length of database: 12,639,632
effective HSP length: 28
effective length of query: 24
effective length of database: 10,856,704
effective search space: 260560896
effective search space used: 260560896
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)