TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144760.12 + phase: 0 /pseudo
         (1302 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   614  e-176
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             607  e-173
CO981347                                                              113  1e-39
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro...   139  1e-32
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ...   137  2e-32
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi...   136  5e-32
BU549979                                                              128  1e-29
CO981879                                                               80  3e-28
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p...   124  4e-28
BI784757                                                              120  3e-27
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti...   120  5e-27
BI701169                                                              118  1e-26
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...   118  1e-26
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V...   114  2e-25
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei...   110  5e-24
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)       110  5e-24
TC232995                                                              109  7e-24
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti...    94  9e-24
BG508993                                                              107  3e-23
BE802806                                                              105  1e-22

>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  614 bits (1583), Expect = e-176
 Identities = 381/1152 (33%), Positives = 601/1152 (52%), Gaps = 42/1152 (3%)
 Frame = +1

Query: 185  RRELGESSSSSVLHTESRGRNSTRGNGRGKSKARRSKSKNHRSSHNSKSIECWNCGKTGH 244
            +R LG +  S+   T +    +    G   S+ R       +     K   C  CGK GH
Sbjct: 1360 QRGLGFNHKSAGRTTMTEFVPAKNSTGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGH 1539

Query: 245  FKNQCRLPTKNQEEKDEANVASTSGGGDAL------ICSL-------ESKEESWVLDSGA 291
             K  C     +          S+S G   +      I SL        S +E W LDSG 
Sbjct: 1540 IKPFCY----HLHGHPHHGTQSSSSGRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGC 1707

Query: 292  SFHASSQKEFFKNYVPGNLGKVYLGNEQSCKVVGKGEVKIKLNGSVWELKNVRHIPNLTK 351
            S H +  KEF  N  P +   V  G+    K+ G G++   ++  +  L  V  +  LT 
Sbjct: 1708 SRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKL---VHDGLPSLNKVLLVKGLTA 1878

Query: 352  NLISVGQLADEGYTTVFHGDDWKIS--KGAMTIARGRKSGTLY----KTAGACHLIAVAT 405
            NLIS+ QL DEG+   F   +  ++  K  + +   R     Y    +          + 
Sbjct: 1879 NLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSK 2058

Query: 406  NENPNLWHKRLGHMSEKGMKVMHSKGK---LPSLRSIEIDICEDCILGKQKRVSFQTSGR 462
             +   +WH+R GH+  +GMK +  KG    +P+L+  E  IC +C +GKQ ++S Q    
Sbjct: 2059 EDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQH 2238

Query: 463  TPKKEKLELVHSDVWGPTTVPSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFEAFKRWKA 522
                  LEL+H D+ GP  V S+GGK Y    +DD SR  WV F++ KS+ FE FK    
Sbjct: 2239 QTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSL 2418

Query: 523  MVENETDLKIKKLRTDNGGEYEDTKFKKFCYEHGIRMERTVPGTPQHNGVAERMNRTLTE 582
             ++ E D  IK++R+D+G E+E++KF +FC   GI  E +   TPQ NG+ ER NRTL E
Sbjct: 2419 RLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQE 2598

Query: 583  RARSLRVQSGLPKKFWAEAVNTSAYLINRGPSVPLEHKIPE---EVWSGKEVKLSHLRVF 639
             AR +     LP   WAEA+NT+ Y+ NR   V L    P    E+W G++  + H  +F
Sbjct: 2599 AARVMLHAKELPYNLWAEAMNTACYIHNR---VTLRRGTPTTLYEIWKGRKPTVKHFHIF 2769

Query: 640  GCVAYVHISDQGRNKLDPKSKKCIFIGYGEDEFGYRLWDDENKKMVRSKDVIFNERVMYK 699
            G   Y+    + R K+DPKS   IF+GY  +   YR+++   + ++ S +V+ ++     
Sbjct: 2770 GSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL---- 2937

Query: 700  DKHNTTTNDSGLSEPVYVEMDDVPGSPTDKSPQSGELAESSIRQPSDTLVHPTPVPVLR- 758
                T      + E V    D+V  + T KS ++ E ++S+  +P+  +  P   P +R 
Sbjct: 2938 ----TPARKKDVEEDVRTSGDNV--ADTAKSAENAENSDSATDEPN--INQPDKRPSIRI 3093

Query: 759  RSSRPHA-----PNR---------RYIDYMLLTDGGEPEDYDEACQTTDASKWELAMKEE 804
            +   P       PNR           +         EP++  EA   TD   W  AM+EE
Sbjct: 3094 QKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKEA--LTD-EFWINAMQEE 3264

Query: 805  MKSLISNQTWELAKLPIGKKALHNKWVYRVKEDHDG-SKRYKARLVVKGFRQKEGIDYTE 863
            ++    N+ WEL   P G   +  KW+++ K + +G   R KARLV +G+ Q EG+D+ E
Sbjct: 3265 LEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDE 3444

Query: 864  IFAPVVKLNTIRSVLSIVASENLYLEQLDVKTAFLHGDLVEEIYMHQPEGFLEEGKENMV 923
             FAPV +L +IR +L +       L Q+DVK+AFL+G L EE Y+ QP+GF++    + V
Sbjct: 3445 TFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHV 3624

Query: 924  CMLKKSLYGLKQAPRQWYMKFESFMHKEGFQKCNADHCCFFKRYKSSYIILLLYVDDMLV 983
              LKK+LYGLKQAPR WY +   F+ ++G++K   D   F K+   + +I  +YVDD++ 
Sbjct: 3625 YRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVF 3804

Query: 984  AGSNIDEIKNLKIQLSKEFDMKDLGPAKKILGMQITRDKQKGVLQLS*AEYINRVLQRFN 1043
             G + + +++   Q+  EF+M  +G     LG+Q+   + +  + LS ++Y   ++++F 
Sbjct: 3805 GGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQV--KQMEDSIFLSQSKYAKNIVKKFG 3978

Query: 1044 MGDAKLVSTPLASHFRLSQEQSPQTEEEKELMAKIPYASAIGSLMYAMVCTRPDIGHAVG 1103
            M +A    TP  +H +LS++++  + ++        Y S IGSL+Y +  +RPDI +AVG
Sbjct: 3979 MENASHKRTPAPTHLKLSKDEAGTSVDQS------LYRSMIGSLLY-LTASRPDITYAVG 4137

Query: 1104 VVSRFMSNPGKAHWEAVKWILRYLRGTTE-KCLYFGKGEIKVEGYVDADFAGEVDHRRST 1162
            V +R+ +NP  +H   VK IL+Y+ GT++   +Y    +  + GY DAD+AG  D R+ST
Sbjct: 4138 VCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKST 4317

Query: 1163 TGYIFTVGTRSVSWMSRIQKIVALSTTEVEYVAVTEASKELIWLQGLLTELGFMQEKSAL 1222
            +G  F +GT  +SW S+ Q  V+LST E EY+A   +  +L+W++ +L E    Q+   L
Sbjct: 4318 SGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTL 4497

Query: 1223 YSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLIKIQGSKNPADMLTKVVTI 1282
            Y D+ SAI+++KN   HSRTKHI +R+H+IR L++D+V+TL  +   +  AD+ TK +  
Sbjct: 4498 YCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDA 4677

Query: 1283 DKLKLCSTLVGL 1294
            ++ +     +G+
Sbjct: 4678 NQFEKLRGKLGI 4713



 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 70/331 (21%), Positives = 124/331 (37%), Gaps = 56/331 (16%)
 Frame = +1

Query: 19  WKMQIEDYLYQKKLH---QPLTEKKPD---SMKDDEWSLLDRQALGVVRLSLSRNVAFNI 72
           WK  I+ + + K L    +P  E KP+   + ++DE +L + +AL  +   + +N+ F +
Sbjct: 118 WKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKNI-FRL 294

Query: 73  AKEKTTAG----LMKALSSMYEKPPSSNKVHLMRRLFTLRMAEGMSVAQ-HINELNIVTT 127
               T A     ++K       K   S    L  +   L+M E   +   H+N L I   
Sbjct: 295 INTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANA 474

Query: 128 QLSSVGIEFDDEVRALILLSSLPDSWSAIVTAVSSSSGSKKMKFDDVR------DLVLSE 181
             +++G    DE     +L SLP  +   VTA+  +     M+ D++       +L LS+
Sbjct: 475 -CTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSD 651

Query: 182 EIRRRE------------------------------LGESSSSSVLHTESRGRNSTRGNG 211
              ++                               LG+  +  +   + R +   R   
Sbjct: 652 RTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIP 831

Query: 212 RGKSKARRSKSKNHRSSHNSKSIECWNCGKTGHFKNQCRLPTKNQ---------EEKDEA 262
               K    + K+     +SK I+C  C   GH K +C    K Q         ++ +  
Sbjct: 832 FDIRKGSEYQKKSDEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESE 1011

Query: 263 NVASTSGGGDALICSLESKEESWVLDSGASF 293
             + +    +AL    ES E+S   DS  +F
Sbjct: 1012QESDSDRDVNALTGRFESAEDSSDTDSEITF 1104


>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  607 bits (1565), Expect = e-173
 Identities = 382/1141 (33%), Positives = 605/1141 (52%), Gaps = 46/1141 (4%)
 Frame = +1

Query: 200  ESRGRNSTRGNGRGKSKARRSKSKNHRSSHNS--------KSIECWNCGKTGHFKNQC-- 249
            +S GR +       K++   + S+ HRS H+         K   C  CGK GH K  C  
Sbjct: 1381 KSAGRTTMTEFVPAKNRTGATMSQ-HRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYH 1557

Query: 250  ------RLPTKNQEEKDEANVASTSGGGDALICSLE-SKEESWVLDSGASFHASSQKEFF 302
                       +   K    V         +  SL  S +E W LDSG S H +  KEF 
Sbjct: 1558 LHGHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFL 1737

Query: 303  KNYVPGNLGKVYLGNEQSCKVVGKGEVKIKLNGSVWELKNVRHIPNLTKNLISVGQLADE 362
             N  P +   V  G+    K++G G++   ++  +  L  V  +  LT NLIS+ QL DE
Sbjct: 1738 LNIEPCSTSYVTFGDGSKGKIIGMGKL---VHDGLPSLNKVLLVKGLTANLISISQLCDE 1908

Query: 363  GYTTVFHGDDWKIS--KGAMTIARGRKSGTLY-----KTAGACHLIAVATNENPNLWHKR 415
            G+   F   +  ++  K  + +   R     Y     +T+ +   ++   +E   +WH+R
Sbjct: 1909 GFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDE-VRIWHQR 2085

Query: 416  LGHMSEKGMKVMHSKGK---LPSLRSIEIDICEDCILGKQKRVSFQTSGRTPKKEKLELV 472
             GH+  +GMK +  KG    +P+L+  E  IC +C +GKQ ++S Q          LEL+
Sbjct: 2086 FGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELL 2265

Query: 473  HSDVWGPTTVPSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFEAFKRWKAMVENETDLKI 532
            H D+ GP  V S+GGK Y    +DD SR  WV F++ KSE FE FK     ++ E D  I
Sbjct: 2266 HMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVI 2445

Query: 533  KKLRTDNGGEYEDTKFKKFCYEHGIRMERTVPGTPQHNGVAERMNRTLTERARSLRVQSG 592
            K++R+D+G E+E+++F +FC   GI  E +   TPQ NG+ ER NRTL E AR +     
Sbjct: 2446 KRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKE 2625

Query: 593  LPKKFWAEAVNTSAYLINRGPSVPLEHKIPE---EVWSGKEVKLSHLRVFGCVAYVHISD 649
            LP   WAEA+NT+ Y+ NR   V L    P    E+W G++  + H  +FG   Y+    
Sbjct: 2626 LPYNLWAEAMNTACYIHNR---VTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADR 2796

Query: 650  QGRNKLDPKSKKCIFIGYGEDEFGYRLWDDENKKMVRSKDVIFNERVMYKDKHNTTTNDS 709
            + R K+DPKS   IF+GY  +   YR+++   + ++ S +V+ ++    + K        
Sbjct: 2797 EQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKK-------- 2952

Query: 710  GLSEPVYVEMDDVPGSPTDKSPQSGELA-----ESSIRQP---SDTLV---HPTPVPVLR 758
             + E V    D+V  +   KS ++ E +     ES+I QP   S T +   HP  + ++ 
Sbjct: 2953 DVEEDVRTSGDNV--ADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKEL-IIG 3123

Query: 759  RSSRPHAPNRRYIDYM---LLTDGGEPEDYDEACQTTDASKWELAMKEEMKSLISNQTWE 815
              +R      R ++ +         EP++  EA   TD   W  AM+EE++    N+ WE
Sbjct: 3124 DPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEA--LTD-EFWINAMQEELEQFKRNEVWE 3294

Query: 816  LAKLPIGKKALHNKWVYRVKEDHDG-SKRYKARLVVKGFRQKEGIDYTEIFAPVVKLNTI 874
            L   P G   +  KW+++ K + +G   R KARLV +G+ Q EG+D+ E FAPV +L +I
Sbjct: 3295 LVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESI 3474

Query: 875  RSVLSIVASENLYLEQLDVKTAFLHGDLVEEIYMHQPEGFLEEGKENMVCMLKKSLYGLK 934
            R +L +       L Q+DVK+AFL+G L EE+Y+ QP+GF +    + V  LKK+LYGLK
Sbjct: 3475 RLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLK 3654

Query: 935  QAPRQWYMKFESFMHKEGFQKCNADHCCFFKRYKSSYIILLLYVDDMLVAGSNIDEIKNL 994
            QAPR WY +   F+ ++G++K   D   F K+   + +I  +YVDD++  G + + +++ 
Sbjct: 3655 QAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHF 3834

Query: 995  KIQLSKEFDMKDLGPAKKILGMQITRDKQKGVLQLS*AEYINRVLQRFNMGDAKLVSTPL 1054
              Q+  EF+M  +G     LG+Q+   + +  + LS + Y   ++++F M +A    TP 
Sbjct: 3835 VQQMQSEFEMSLVGELTYFLGLQV--KQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPA 4008

Query: 1055 ASHFRLSQEQSPQTEEEKELMAKIPYASAIGSLMYAMVCTRPDIGHAVGVVSRFMSNPGK 1114
             +H +LS++++  + ++        Y S IGSL+Y +  +RPDI +AVGV +R+ +NP  
Sbjct: 4009 PTHLKLSKDEAGTSVDQS------LYRSMIGSLLY-LTASRPDITYAVGVCARYQANPKI 4167

Query: 1115 AHWEAVKWILRYLRGTTE-KCLYFGKGEIKVEGYVDADFAGEVDHRRSTTGYIFTVGTRS 1173
            +H   VK IL+Y+ GT++   +Y       + GY DAD+AG  D R+ST+G  F +G   
Sbjct: 4168 SHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNL 4347

Query: 1174 VSWMSRIQKIVALSTTEVEYVAVTEASKELIWLQGLLTELGFMQEKSALYSDSQSAIHLA 1233
            +SW S+ Q  V+LST E EY+A   +  +L+W++ +L E    Q+   LY D+ SAI+++
Sbjct: 4348 ISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINIS 4527

Query: 1234 KNSAFHSRTKHIGLRYHFIRSLLEDEVLTLIKIQGSKNPADMLTKVVTIDKLKLCSTLVG 1293
            KN   HSRTKHI +R+H+IR L++D+V+TL  +   +  AD+ TK +  ++ +     +G
Sbjct: 4528 KNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLG 4707

Query: 1294 L 1294
            +
Sbjct: 4708 I 4710



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 88/406 (21%), Positives = 163/406 (39%), Gaps = 63/406 (15%)
 Frame = +1

Query: 19  WKMQIEDYLYQKKLH---QPLTEKKPD---SMKDDEWSLLDRQALGVVRLSLSRNVAFNI 72
           WK  I+ + + K L    +P  E KP+   + ++DE +L + +AL  +   + +N+ F +
Sbjct: 118 WKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKNI-FRL 294

Query: 73  AKEKTTAGLMKALSSMYEKPPSSNKVHLMRRLFT----LRMAEGMSVAQ-HINELNIVTT 127
               T A     +  +  +  S  K+  ++ L T    L+M E   +   H+N L I   
Sbjct: 295 INTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANA 474

Query: 128 QLSSVGIEFDDEVRALILLSSLPDSWSAIVTAVSSSSGSKKMKFDDVRDLVLSEEIRRRE 187
             +++G    DE     +L SLP  +   VTA+  +     M+ D++   + + E+   +
Sbjct: 475 -CTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSD 651

Query: 188 LGESSSSSV--------------LHTESRGRNSTRGNGRGKSK----------------- 216
             E  S ++              L T+    N+    G+  +K                 
Sbjct: 652 RAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIP 831

Query: 217 ------ARRSKSKNHRSSHNSKSIECWNCGKTGHFKNQCRLPTKN--------QEEKDEA 262
                 ++  K  + + SH SK I+C  C   GH   +C    K         Q + +  
Sbjct: 832 FDIRKGSKYQKRSDVKPSH-SKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSDTESE 1008

Query: 263 NVASTSGGGDALICSLESKEESWVLDSGASFH---ASSQKEFFKN----YVPGNLGKVYL 315
             + +    +AL    E+ E+S   DS  +F    AS +K   K+         L KV +
Sbjct: 1009QESDSDRDVNALTGIFETAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKV-I 1185

Query: 316 GNEQSCKVVGKGEVKIKLNGSVWELKNVRHIPNLTKNLISVGQLAD 361
            + ++ K   K E+  +L G V  L +   + N+TK++  + + +D
Sbjct: 1186ADLEAEKEAHKEEIS-ELKGEVGFLNS--KLENMTKSIKMLNKGSD 1314


>CO981347 
          Length = 624

 Score =  113 bits (282), Expect(3) = 1e-39
 Identities = 56/125 (44%), Positives = 78/125 (61%)
 Frame = +2

Query: 513 VFEAFKRWKAMVENETDLKIKKLRTDNGGEYEDTKFKKFCYEHGIRMERTVPGTPQHNGV 572
           +F  F+    ++ N+   K+K LRTDNG E+   +F +FC + GI+  + VP TP  NG+
Sbjct: 104 IF*KFRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGL 283

Query: 573 AERMNRTLTERARSLRVQSGLPKKFWAEAVNTSAYLINRGPSVPLEHKIPEEVWSGKEVK 632
           AERMN T+ ER R + + + LPK FW EA NT++YLINR PS  L  K P E WSG+   
Sbjct: 284 AERMNMTILERVRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTPMEAWSGETT* 463

Query: 633 LSHLR 637
           L  ++
Sbjct: 464 LFRIK 478



 Score = 48.9 bits (115), Expect(3) = 1e-39
 Identities = 21/37 (56%), Positives = 28/37 (74%)
 Frame = +3

Query: 479 PTTVPSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFE 515
           P+ V + GG  YF+T IDD SR+VW+Y LK+KSE F+
Sbjct: 3   PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESFK 113



 Score = 42.0 bits (97), Expect(3) = 1e-39
 Identities = 20/49 (40%), Positives = 30/49 (60%)
 Frame = +3

Query: 629 KEVKLSHLRVFGCVAYVHISDQGRNKLDPKSKKCIFIGYGEDEFGYRLW 677
           K    S L+VFG +A+ H+    + KLD ++ KC+FIGY +    Y+LW
Sbjct: 453 KPPNYSGLKVFGSLAFDHVK---QGKLDARAVKCVFIGYPKGVKRYKLW 590


>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
            (7%)
          Length = 804

 Score =  139 bits (349), Expect = 1e-32
 Identities = 81/219 (36%), Positives = 128/219 (57%), Gaps = 6/219 (2%)
 Frame = +1

Query: 1084 IGSLMYAMVCTRPDIGHAVGVVSRFMSNPGKAHWEAVKWILRYLRGTTEKCLYFG----K 1139
            IGSL Y +  +RP+I  AV ++SRFM  P  +H +A K +LR ++GT    + F      
Sbjct: 34   IGSLRY-LCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFKAKS 210

Query: 1140 GEIKVEGYVDADFAGEVDHRRSTTGYIFTVGTRSVSWMSRIQKIVALSTTEVEYVAVTEA 1199
            G+  + GY D+D+  + +  +ST GY+F      V+  S+ Q ++ALST E EYVA +  
Sbjct: 211  GKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAASLG 390

Query: 1200 SKELIWLQGLLTELGFMQEKSA-LYSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLED 1258
            + + +W+  LL EL   + K   L  D++SAI+LAK+   H R+KHI LR+H+IR  +  
Sbjct: 391  ACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQVSK 570

Query: 1259 EVLTLIKIQGSKNPADMLTKVVTIDKLK-LCSTLVGLLE 1296
              +T+   +  +  AD++TK + + + K +CS LV  LE
Sbjct: 571  GNVTVEYCKAEEQLADLMTKPIQVSRFKQICSELVNNLE 687


>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
           (japonica cultivar-group)}, partial (10%)
          Length = 463

 Score =  137 bits (346), Expect = 2e-32
 Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
 Frame = -3

Query: 799 LAMKEEMKSLISNQTWELAKLPIGKKALHNKWVYRVKEDHDGSK-RYKARLVVKGFRQKE 857
           +AM+EE+     N  W+L + P     +  KWV+R K D  G   R KARLV KG+ Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282

Query: 858 GIDYTEIFAPVVKLNTIRSVLSIVASENLYLEQLDVKTAFLHGDLVEEIYMHQPEGFLEE 917
           GIDY E +APV +L  IR +L+ V+  N  L Q+DVK+AFL+G + EE+Y+ QP GF   
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102

Query: 918 GKENMVCMLKKSLYGLKQAPRQWYMKFESFM 948
            K   V  L+K+LYGLKQAPR WY +  +F+
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFL 9


>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
           partial (34%)
          Length = 407

 Score =  136 bits (343), Expect = 5e-32
 Identities = 69/132 (52%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
 Frame = -2

Query: 819 LPIGKKALHNKWVYRVKEDHDGS-KRYKARLVVKGFRQKEGIDYTEIFAPVVKLNTIRSV 877
           LP GK  +  +WVY VK    G   R KARLV KG+ Q  GIDY + F+PV KL T+R  
Sbjct: 400 LPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVRLF 221

Query: 878 LSIVASENLYLEQLDVKTAFLHGDLVEEIYMHQPEGFLEEGKENMVCMLKKSLYGLKQAP 937
           L++ A  +  L QLD+K AFLHGDL E+IYM QP GF+ +G+  +VC L +SLYGLKQ+P
Sbjct: 220 LAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQSP 41

Query: 938 RQWYMKFESFMH 949
           R W+ KF   +H
Sbjct: 40  RAWFGKFSHVVH 5


>BU549979 
          Length = 615

 Score =  128 bits (322), Expect = 1e-29
 Identities = 71/187 (37%), Positives = 111/187 (58%), Gaps = 4/187 (2%)
 Frame = -1

Query: 1104 VVSRFMSNPGKAHWEAVKWILRYLRGTTEKCLYFGKGE-IKVEGYVDADFAGEVDHRRST 1162
            V+ R+ SNPG  HW+  K ++RYL+GT +  L + +   ++V GY D+DFAG VD RRST
Sbjct: 615  VLGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRST 436

Query: 1163 TGYIFTVGTRSVSWMSRIQKIVALSTTEVEYVAVTEASKELIWLQGLLTELGFMQEKS-- 1220
            +GYIF +    VSW S  Q ++A ST EVE+V   EA+   +WL+  ++ L  +   S  
Sbjct: 435  SGYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRP 256

Query: 1221 -ALYSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLIKIQGSKNPADMLTKV 1279
              LY D+ +A+ +AKN+   +R+KHI ++Y  IR  ++++ + +  +       D LTK 
Sbjct: 255  LKLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKG 76

Query: 1280 VTIDKLK 1286
            +T    K
Sbjct: 75   MTPKNFK 55


>CO981879 
          Length = 576

 Score = 79.7 bits (195), Expect(2) = 3e-28
 Identities = 42/95 (44%), Positives = 56/95 (58%)
 Frame = -1

Query: 517 FKRWKAMVENETDLKIKKLRTDNGGEYEDTKFKKFCYEHGIRMERTVPGTPQHNGVAERM 576
           FK +  M++ +  +KIK  R+DNG EY +    K   E+GI  + +   TPQ NGVAER 
Sbjct: 567 FKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAERK 388

Query: 577 NRTLTERARSLRVQSGLPKKFWAEAVNTSAYLINR 611
           NR L E AR+L  Q+  PK  W EA+ T  YL N+
Sbjct: 387 NRHLXEVARALLFQNKAPKYXWGEAILTGTYLKNK 283



 Score = 65.5 bits (158), Expect(2) = 3e-28
 Identities = 33/93 (35%), Positives = 56/93 (59%), Gaps = 5/93 (5%)
 Frame = -2

Query: 611 RGPSVPLEHKIPEEVWSGK--EVKLS---HLRVFGCVAYVHISDQGRNKLDPKSKKCIFI 665
           R PS  L  + P +V++      +LS    L++FGC  +VHI +  + KL+P++KKC+F+
Sbjct: 284 RMPSKILNFRTPLDVFTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFV 105

Query: 666 GYGEDEFGYRLWDDENKKMVRSKDVIFNERVMY 698
           GY  ++ GY+ +D  +KK   + DV F E+  +
Sbjct: 104 GYAPNQKGYKCFDPTSKKTFVTIDVTFFEKTPF 6


>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
           polyprotein, partial (4%)
          Length = 919

 Score =  124 bits (310), Expect = 4e-28
 Identities = 63/145 (43%), Positives = 88/145 (60%)
 Frame = +1

Query: 443 ICEDCILGKQKRVSFQTSGRTPKKEKLELVHSDVWGPTTVPSIGGKHYFVTFIDDHSRKV 502
           +C+ C +GK+ R SF T      K+ L++VH D+     +P+ G  +YF+TFIDD S+K+
Sbjct: 328 VCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLC-TVEIPTHGDNNYFITFIDDFSKKM 504

Query: 503 WVYFLKHKSEVFEAFKRWKAMVENETDLKIKKLRTDNGGEYEDTKFKKFCYEHGIRMERT 562
           WVYFLK KSE   AFK +KA  E +   K+K L  D G EY    +  F  +HGI+ + T
Sbjct: 505 WVYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEY--LSYTIFFEKHGIQHQLT 678

Query: 563 VPGTPQHNGVAERMNRTLTERARSL 587
              TPQHNGV ER N+T+ +  R +
Sbjct: 679 TKYTPQHNGVTERKNKTIMDMVRCM 753


>BI784757 
          Length = 430

 Score =  120 bits (302), Expect = 3e-27
 Identities = 55/123 (44%), Positives = 84/123 (67%)
 Frame = +1

Query: 442 DICEDCILGKQKRVSFQTSGRTPKKEKLELVHSDVWGPTTVPSIGGKHYFVTFIDDHSRK 501
           ++C+ C+  KQ R +F+ +     KEKLE+++SDV GP    S+GG  YF++FID+ +RK
Sbjct: 61  EVCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLGGNRYFISFIDELTRK 240

Query: 502 VWVYFLKHKSEVFEAFKRWKAMVENETDLKIKKLRTDNGGEYEDTKFKKFCYEHGIRMER 561
           VWVY ++ KS+ FE F+++K M + ++   IK LRT+ GGEY  T+F++FC + GI  E 
Sbjct: 241 VWVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVSTEFQEFCDQQGIIHEV 420

Query: 562 TVP 564
           T P
Sbjct: 421 TPP 429


>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
          Length = 558

 Score =  120 bits (300), Expect = 5e-27
 Identities = 73/175 (41%), Positives = 98/175 (55%), Gaps = 1/175 (0%)
 Frame = +1

Query: 843  RYKARLVVKGFRQKEGIDYTEIFAPVVKLNTIRSVLSIVASENLYLEQLDVKTAFLHGDL 902
            ++KARLV K + Q  G DYT  F+PV K+  +  + S+    +  L  LD K AFLHG L
Sbjct: 40   QFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFLHGYL 219

Query: 903  VEEIYMHQPEGFLEEGK-ENMVCMLKKSLYGLKQAPRQWYMKFESFMHKEGFQKCNADHC 961
             EE+YM QP GF+ +G+  NMVC L +S YGLKQ+PR W   F        +    ADH 
Sbjct: 220  EEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSHEADHS 393

Query: 962  CFFKRYKSSYIILLLYVDDMLVAGSNIDEIKNLKIQLSKEFDMKDLGPAKKILGM 1016
             F+       I L++YVDD+ + GS+   I  LK  L  +F  KDLG  +  LG+
Sbjct: 394  VFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558


>BI701169 
          Length = 407

 Score =  118 bits (296), Expect = 1e-26
 Identities = 56/97 (57%), Positives = 70/97 (71%)
 Frame = +2

Query: 491 FVTFIDDHSRKVWVYFLKHKSEVFEAFKRWKAMVENETDLKIKKLRTDNGGEYEDTKFKK 550
           F  FIDD SRK WVYF KHK EVFE FK++KA+VE E+  KIK +R+D GGE+   +F+K
Sbjct: 113 FFLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQK 292

Query: 551 FCYEHGIRMERTVPGTPQHNGVAERMNRTLTERARSL 587
           +C +HGIR    V  +PQ NGVAER NRT+   ARS+
Sbjct: 293 YCDDHGIRRPLMVLRSPQQNGVAERKNRTILNMARSM 403


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
            (30%)
          Length = 687

 Score =  118 bits (296), Expect = 1e-26
 Identities = 68/156 (43%), Positives = 97/156 (61%), Gaps = 3/156 (1%)
 Frame = +2

Query: 1139 KGEIKVEGYVDADFAGEVDHRRSTTGYIFTVGTRSVSWMSRIQKIVALSTTEVEYVAVTE 1198
            KG  ++ GY DAD+AG    RRST+GY   +G   VSW S+ Q +VA S+ E EY ++  
Sbjct: 2    KGNTQLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAM 181

Query: 1199 ASKELIWLQGLLTELGFMQE-KSALYSDSQSAIHLAKNSAFHSRTKHIGLRYHFIR-SLL 1256
             + EL+W++  L EL F +E +  LY D+Q+A+H+A N  FH RTKHI +  HFIR  LL
Sbjct: 182  VTCELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLL 361

Query: 1257 EDEVLTLIKIQGSKNPADMLTKVVTIDKLKL-CSTL 1291
              E++T   I  +  P D+LTK +   K+++ CS L
Sbjct: 362  SKEIVTEF-IGSNDQPVDILTKSLRGPKIQIVCSKL 466


>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
           vinifera}, partial (34%)
          Length = 409

 Score =  114 bits (286), Expect = 2e-25
 Identities = 60/123 (48%), Positives = 78/123 (62%), Gaps = 1/123 (0%)
 Frame = +3

Query: 790 QTTDASKWELAMKEEMKSLISNQTWELAKLPIGKKALHNKWVYRVKEDHDGS-KRYKARL 848
           +  D   W  AM +EM++L +N TWEL  LP GK  +  +WVY VK   +G   R KARL
Sbjct: 36  EALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDRLKARL 215

Query: 849 VVKGFRQKEGIDYTEIFAPVVKLNTIRSVLSIVASENLYLEQLDVKTAFLHGDLVEEIYM 908
           V KG+ Q  GI+Y + F+PV  L T+R  L++ A  +  L QLD+K AFLHGDL E+IYM
Sbjct: 216 VAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLEEDIYM 395

Query: 909 HQP 911
            QP
Sbjct: 396 EQP 404


>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
           (Fragment), partial (28%)
          Length = 865

 Score =  110 bits (274), Expect = 5e-24
 Identities = 89/276 (32%), Positives = 131/276 (47%), Gaps = 3/276 (1%)
 Frame = +2

Query: 322 KVVGKGEVKIKLNGSVWELKNVRHIPNLTKNLISVGQLAD-EGYTTVFHGDDWKISK--G 378
           +VV  G   +    S+  L +V  I     N+ S+ QL      +  F  + + I +   
Sbjct: 41  RVVATGIGHVSPTSSL-SLNSVVFILGCPFNITSLSQLTRFRNCSVTFDANSFVIQECGT 217

Query: 379 AMTIARGRKSGTLYKTAGACHLIAVATNENPNLWHKRLGHMSEKGMKVMHSKGKLPSLRS 438
             TI  G +S  LY        +  A   +P L H+RLGH     +K+M     +PSL  
Sbjct: 218 GWTIGVGIESHGLYYLKPNLSWVCSAVT-SPKLLHERLGHPHLSKLKIM-----VPSLEK 379

Query: 439 IEIDICEDCILGKQKRVSFQTSGRTPKKEKLELVHSDVWGPTTVPSIGGKHYFVTFIDDH 498
           I+   CE C LGK  R S +          L ++H D+WGP  V S+  + YFVTFID+ 
Sbjct: 380 IKDLFCESCQLGKHVRSSXRHVESRVDSPFL-VIHXDIWGPNRVSSMSYR-YFVTFIDEF 553

Query: 499 SRKVWVYFLKHKSEVFEAFKRWKAMVENETDLKIKKLRTDNGGEYEDTKFKKFCYEHGIR 558
           S+   V+ +K +SE+  +F      ++ +    IK LR+DN  EY  +    F    GI 
Sbjct: 554 SQCTRVFLMKERSEIL-SFLTSVNKIKTQFGKTIKILRSDNAKEYFSSVISPFXSAQGIL 730

Query: 559 MERTVPGTPQHNGVAERMNRTLTERARSLRVQSGLP 594
            + + P TPQ N +AER NR L E AR+L + +  P
Sbjct: 731 HQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEP 838


>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
          Length = 493

 Score =  110 bits (274), Expect = 5e-24
 Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
 Frame = +3

Query: 1157 DHRRSTTGYIFTVGTRSVSWMSRIQKIVALSTTEVEYVAVTEASKELIWLQGLLTELGFM 1216
            D R+STTG++F +G  + +WMS+ Q IV LST E EYVA T      IWL+ LL EL   
Sbjct: 9    DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188

Query: 1217 QEK-SALYSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLIKIQGSKNPADM 1275
            QE+   +  D++SA+ LAKN  FH ++KHI  RYHFIR  +E + + L  +      AD+
Sbjct: 189  QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368

Query: 1276 LTKVVTIDKLKLCSTLVGL 1294
             TK + ++      +++G+
Sbjct: 369  FTKPLKLETFVKLRSMLGV 425


>TC232995 
          Length = 1009

 Score =  109 bits (273), Expect = 7e-24
 Identities = 60/181 (33%), Positives = 104/181 (57%)
 Frame = +2

Query: 908  MHQPEGFLEEGKENMVCMLKKSLYGLKQAPRQWYMKFESFMHKEGFQKCNADHCCFFKRY 967
            + QP GF    K N V  L+K+LYGLKQAPR WY +  +F+ ++ F +   D   F KR 
Sbjct: 2    VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181

Query: 968  KSSYIILLLYVDDMLVAGSNIDEIKNLKIQLSKEFDMKDLGPAKKILGMQITRDKQKGVL 1027
             +  +++ +YVDD++   +N    K   + +  EF+M  +G  K  LG+QI +  Q G+ 
Sbjct: 182  HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQI-KQTQ*GIF 358

Query: 1028 QLS*AEYINRVLQRFNMGDAKLVSTPLASHFRLSQEQSPQTEEEKELMAKIPYASAIGSL 1087
             ++ ++Y   +++RF M  AK +STP++++  L +++S Q+ + K+      Y  AIG +
Sbjct: 359  -INQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQ------YRDAIGEV 517

Query: 1088 M 1088
            +
Sbjct: 518  V 520


>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
          Length = 1213

 Score = 94.0 bits (232), Expect(2) = 9e-24
 Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 1/197 (0%)
 Frame = +3

Query: 968  KSSYIILLLYVDDMLVAGSNIDEIKNLKIQLSKEFDMKDLGPAKKILGMQITRDKQKGVL 1027
            K +++I+ +YVDD++   ++    K     +   F+    G  K +LG+QI + K  G+ 
Sbjct: 477  KETFLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQ-KVYGIF 653

Query: 1028 QLS*AEYINRVLQRFNMGDAKLVSTPLASHFRLSQEQSPQTEEEKELMAKIPYASAIGSL 1087
             +   +Y    L+RF M +AK ++TP+     + +++       KE      Y+  I SL
Sbjct: 654  -IHQEKYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KE------YSGMIDSL 812

Query: 1088 MYAMVCTRPDIGHAVGVVSRFMSNPGKAHWEAVKWILRYLRGTTEKCLYFGK-GEIKVEG 1146
             Y +  +RPDI   V + +RF S P  +H  AVK ILRYL GTT  CL+F K  E  + G
Sbjct: 813  SY-LTSSRPDIVFVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLG 989

Query: 1147 YVDADFAGEVDHRRSTT 1163
            Y D  FAG+   R+ST+
Sbjct: 990  YCDVYFAGDKVERKSTS 1040



 Score = 36.2 bits (82), Expect(2) = 9e-24
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 930 LYGLKQAPRQWYMKFESFMHKEGFQKCNADHCCFFKRYKSS 970
           +YGLKQA R WY +  SF+   GF +   D   F K  K +
Sbjct: 362 VYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGN 484


>BG508993 
          Length = 374

 Score =  107 bits (268), Expect = 3e-23
 Identities = 57/123 (46%), Positives = 80/123 (64%), Gaps = 2/123 (1%)
 Frame = +1

Query: 1128 RGTTEKCLYFG-KGEIKVEGYVDADFAGEVDHRRSTTGYIFTVGTRSVSWMSRIQKIVAL 1186
            +GT +  L++      K+ G+ D+DFAG+VD R+STTG++F +G    +W S+ Q IV L
Sbjct: 4    KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183

Query: 1187 STTEVEYVAVTEASKELIWLQGLLTELGFMQEKSA-LYSDSQSAIHLAKNSAFHSRTKHI 1245
             T E EYVA T  +   IWL+ LL EL  +Q++S  +Y D++SA  LAKNS FH R+KHI
Sbjct: 184  FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363

Query: 1246 GLR 1248
              R
Sbjct: 364  DTR 372


>BE802806 
          Length = 285

 Score =  105 bits (263), Expect = 1e-22
 Identities = 50/94 (53%), Positives = 69/94 (73%)
 Frame = -2

Query: 1004 MKDLGPAKKILGMQITRDKQKGVLQLS*AEYINRVLQRFNMGDAKLVSTPLASHFRLSQE 1063
            MKDLG A++ILG+ I RD+ KG L LS + Y+ +V++RF M  +K VSTPL  H +LS  
Sbjct: 284  MKDLGSARRILGIDIHRDRAKGELFLSQSNYLKKVVERFRMHQSKPVSTPLGHHTKLSVT 105

Query: 1064 QSPQTEEEKELMAKIPYASAIGSLMYAMVCTRPD 1097
            Q+P+T EE+  M + PYA+ +GS+MY MVC+RPD
Sbjct: 104  QAPETAEERSKMNQTPYANGVGSIMYGMVCSRPD 3


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,585,100
Number of Sequences: 63676
Number of extensions: 787422
Number of successful extensions: 4592
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 4393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4505
length of query: 1302
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1194
effective length of database: 5,762,624
effective search space: 6880573056
effective search space used: 6880573056
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)