BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144731.7 + phase: 0
(228 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231848 weakly similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein A... 107 4e-24
TC206232 homologue to UP|Q8H6F8 (Q8H6F8) MADS box protein GHMADS... 77 5e-15
TC207360 similar to UP|Q8VWZ3 (Q8VWZ3) C-type MADS box protein, ... 76 1e-14
BU761215 homologue to PIR|T08039|T08 MADS-box protein - cucumber... 76 1e-14
TC220575 similar to UP|Q8LLR1 (Q8LLR1) MADS-box protein 3, parti... 73 9e-14
TC210559 similar to UP|Q84MI1 (Q84MI1) MADS-box protein (Fragmen... 73 1e-13
TC228632 similar to UP|Q9ZTQ9 (Q9ZTQ9) MADS box protein 26, part... 73 1e-13
TC234766 homologue to UP|Q7Y137 (Q7Y137) MADS-box protein PTM5, ... 72 2e-13
AW706936 72 2e-13
AI959798 similar to GP|22091481|emb MADS box transcription facto... 72 2e-13
TC208789 similar to UP|Q9SBQ1 (Q9SBQ1) MADS box transcription fa... 70 6e-13
TC207768 similar to UP|Q9ST53 (Q9ST53) MADS-box protein 4, parti... 70 6e-13
TC222058 homologue to UP|AGL9_PETHY (Q03489) Agamous-like MADS b... 70 8e-13
TC228368 similar to UP|O49173 (O49173) MADS-box protein NMH 7, p... 70 8e-13
TC229190 similar to UP|Q9SEG4 (Q9SEG4) CAGL2, partial (86%) 70 1e-12
BM732175 similar to GP|15022157|gb MADS box protein-like protein... 70 1e-12
BG789532 similar to GP|13384052|gb| MADS-box transcription facto... 69 1e-12
TC229191 homologue to UP|Q84U54 (Q84U54) MADS-RIN-like protein, ... 69 2e-12
TC228392 similar to UP|Q8LLR0 (Q8LLR0) MADS-box protein 4, parti... 69 2e-12
CD412950 weakly similar to SP|Q9S7Q7|FLC_A FLOWERING LOCUS C pro... 68 3e-12
>TC231848 weakly similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein AGL62,
partial (25%)
Length = 621
Score = 107 bits (267), Expect = 4e-24
Identities = 56/110 (50%), Positives = 76/110 (68%)
Frame = -3
Query: 5 RKGRGRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSF 64
+K +GRQKIEMK I+N+ +LQVTFSKH G+FKKASEL TLCG D+A+++FSP+ V+SF
Sbjct: 334 KKTKGRQKIEMKTIANKCSLQVTFSKHRTGVFKKASELATLCGVDLAVIMFSPNNHVYSF 155
Query: 65 GHPNLDTVIDRFLSLIPTQNDGTMQFIEAHRNANVRELNAQLTQINNTLD 114
G PN+D+VI R+ + P T EA + EL A L ++N +D
Sbjct: 154 GSPNVDSVIQRYTTEGPPPL-FTQDLNEAPCTMDEGELQAHLNCLSNQID 8
>TC206232 homologue to UP|Q8H6F8 (Q8H6F8) MADS box protein GHMADS-2, partial
(95%)
Length = 960
Score = 77.4 bits (189), Expect = 5e-15
Identities = 44/120 (36%), Positives = 66/120 (54%), Gaps = 2/120 (1%)
Frame = +3
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPN 68
GR KIE+K+I N +N QVTF K NGL KKA EL LC A+VAL+VFS G+++ + + N
Sbjct: 78 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNN 257
Query: 69 LDTVIDRFLSLIPTQNDG--TMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELSNL 126
+ + I+R+ + T + + +L Q+ + N+ +GD LS L
Sbjct: 258 IRSTIERYKKACSDHSSASTTTEINAQYYQQESAKLRQQIQMLQNS--NRHLMGDALSTL 431
>TC207360 similar to UP|Q8VWZ3 (Q8VWZ3) C-type MADS box protein, partial
(88%)
Length = 1075
Score = 75.9 bits (185), Expect = 1e-14
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +2
Query: 2 SSVRKGRGRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKV 61
+S +K GR KIE+K+I N +N QVTF K NGL KKA EL LC A+VALVVFS G++
Sbjct: 77 ASSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRL 256
Query: 62 FSFGHPNLDTVIDRF 76
+ + + ++ I+R+
Sbjct: 257 YEYANNSVRATIERY 301
>BU761215 homologue to PIR|T08039|T08 MADS-box protein - cucumber, partial
(42%)
Length = 450
Score = 75.9 bits (185), Expect = 1e-14
Identities = 42/109 (38%), Positives = 64/109 (58%)
Frame = +1
Query: 3 SVRKGRGRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVF 62
S ++ GR KIE+K+I N +N QVTF K NGL KKA EL LC A+VAL+VFS G+++
Sbjct: 127 SPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 306
Query: 63 SFGHPNLDTVIDRFLSLIPTQNDGTMQFIEAHRNANVRELNAQLTQINN 111
+ + ++ I+R+ + + G EA+ +E + QI+N
Sbjct: 307 EYANNSVKATIERY-KKASSDSSGAGSASEANAQFYQQEADKLRQQISN 450
>TC220575 similar to UP|Q8LLR1 (Q8LLR1) MADS-box protein 3, partial (44%)
Length = 851
Score = 73.2 bits (178), Expect = 9e-14
Identities = 32/68 (47%), Positives = 49/68 (72%)
Frame = +2
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPN 68
GR K+ +++I N+ N QVTFSK NGL KKA EL LC A++ALV+FS GK+F + +
Sbjct: 161 GRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSSTD 340
Query: 69 LDTVIDRF 76
++ +I+++
Sbjct: 341 INRIIEKY 364
>TC210559 similar to UP|Q84MI1 (Q84MI1) MADS-box protein (Fragment), partial
(64%)
Length = 710
Score = 72.8 bits (177), Expect = 1e-13
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Frame = +1
Query: 10 RQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPNL 69
R + +M++I N ++ QVTFSK NGL KKA EL LC A+VAL++FSP GK++ F ++
Sbjct: 346 RGETQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSM 525
Query: 70 DTVIDRFLSLIPTQNDGTMQFIEAHRNANVREL---NAQLTQINNTLDAEKK--IGDELS 124
I+R+ +++ + Q + N++ L A L + L+A K+ +G+ L
Sbjct: 526 QDTIERY-----RRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLG 690
Query: 125 NLHKE 129
+ E
Sbjct: 691 SCSLE 705
>TC228632 similar to UP|Q9ZTQ9 (Q9ZTQ9) MADS box protein 26, partial (82%)
Length = 880
Score = 72.8 bits (177), Expect = 1e-13
Identities = 46/150 (30%), Positives = 77/150 (50%), Gaps = 2/150 (1%)
Frame = +1
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPN 68
GR KIE+K+I N SN QVT+SK NG+ KKA E+ LC A V+L++F+ SGK+ + P+
Sbjct: 58 GRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPS 237
Query: 69 --LDTVIDRFLSLIPTQNDGTMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELSNL 126
L +++R+ H+ + R +A+ +N ++ KK D +
Sbjct: 238 TTLIDILERY-----------------HKTSGKRLWDAKHENLNGEIERLKKENDSM--- 357
Query: 127 HKETEAKFWWACVVDGMNRDQLEIFKKALE 156
+ E + ++ +N +L + ALE
Sbjct: 358 --QIELRHLKGDDINSLNYKELMALEDALE 441
>TC234766 homologue to UP|Q7Y137 (Q7Y137) MADS-box protein PTM5, partial
(33%)
Length = 490
Score = 72.4 bits (176), Expect = 2e-13
Identities = 32/67 (47%), Positives = 47/67 (69%)
Frame = +2
Query: 10 RQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPNL 69
R K ++++I N ++ QVTFSK NGL KKA EL LC A+VAL++FSP GK++ F ++
Sbjct: 245 RGKTQLRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSM 424
Query: 70 DTVIDRF 76
I+R+
Sbjct: 425 QDTIERY 445
>AW706936
Length = 422
Score = 72.4 bits (176), Expect = 2e-13
Identities = 34/71 (47%), Positives = 50/71 (69%)
Frame = +2
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPN 68
GR KI +++I N ++ QVTFSK NGL KKA EL LC A+V L+VFS +GK++ + +
Sbjct: 134 GRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTS 313
Query: 69 LDTVIDRFLSL 79
+ +VI+R+ L
Sbjct: 314 MKSVIERYNKL 346
>AI959798 similar to GP|22091481|emb MADS box transcription factor {Daucus
carota subsp. sativus}, partial (39%)
Length = 409
Score = 72.4 bits (176), Expect = 2e-13
Identities = 36/69 (52%), Positives = 47/69 (67%), Gaps = 2/69 (2%)
Frame = +3
Query: 6 KGRGRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSF- 64
K GR K+E+K+I N+ N QVTF+K NGL KKA EL LC A+VAL++FS GK++ F
Sbjct: 84 KHMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFC 263
Query: 65 -GHPNLDTV 72
GH T+
Sbjct: 264 SGHSTAKTL 290
>TC208789 similar to UP|Q9SBQ1 (Q9SBQ1) MADS box transcription factor,
partial (72%)
Length = 995
Score = 70.5 bits (171), Expect = 6e-13
Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +3
Query: 3 SVRKGRGRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVF 62
SV GRGR +E+K+I N+ +QVTFSK +GL KKA E+ LC ADVAL+VFS GK+
Sbjct: 210 SVYMGRGR--VELKRIENKIFMQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLL 383
Query: 63 SFGH-PNLDTVIDRF 76
+ + P + +++R+
Sbjct: 384 DYSNQPCTERILERY 428
>TC207768 similar to UP|Q9ST53 (Q9ST53) MADS-box protein 4, partial (27%)
Length = 951
Score = 70.5 bits (171), Expect = 6e-13
Identities = 32/60 (53%), Positives = 45/60 (74%)
Frame = +3
Query: 3 SVRKGRGRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVF 62
S R+ G++K+E+K+I N+S Q+TFSK NGL KKA EL LC A VAL++FS +GK++
Sbjct: 96 SARRRMGKKKVEIKRIENKSTRQITFSKRRNGLMKKARELSILCDAKVALLIFSSTGKLY 275
>TC222058 homologue to UP|AGL9_PETHY (Q03489) Agamous-like MADS box protein
AGL9 homolog (Floral homeotic protein FBP2) (Floral
binding protein 2), partial (60%)
Length = 495
Score = 70.1 bits (170), Expect = 8e-13
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Frame = +3
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSF-GHP 67
GR ++E+K+I N+ N QVTF+K NGL KKA EL LC A+VAL++FS GK++ F
Sbjct: 63 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 242
Query: 68 NLDTVIDRFLSL---IPTQNDGTMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELS 124
++ ++R+ P N T + +E +L A+ + + +G++L
Sbjct: 243 SMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRS--QRNLMGEDLG 416
Query: 125 NL-HKETEA 132
L KE E+
Sbjct: 417 PLSSKELES 443
>TC228368 similar to UP|O49173 (O49173) MADS-box protein NMH 7, partial (97%)
Length = 1042
Score = 70.1 bits (170), Expect = 8e-13
Identities = 45/124 (36%), Positives = 72/124 (57%), Gaps = 4/124 (3%)
Frame = +3
Query: 10 RQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPNL 69
R KI++K+I N +N QVT+SK NGLFKKA+EL LC A V++++FS +GK+ + P+
Sbjct: 87 RGKIQIKRIENNTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHQYISPST 266
Query: 70 DT--VIDRFLSLIPTQNDGTMQFIEAHRNANVRELNAQLTQINNTLDAE--KKIGDELSN 125
T D++ Q + +H N++E +L ++N L E +++GD L+
Sbjct: 267 STKQFFDQY------QMTLGVDLWNSHYE-NMQENLKKLKEVNRNLRKEIRQRMGDCLNE 425
Query: 126 LHKE 129
L E
Sbjct: 426 LGME 437
>TC229190 similar to UP|Q9SEG4 (Q9SEG4) CAGL2, partial (86%)
Length = 1062
Score = 69.7 bits (169), Expect = 1e-12
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = +1
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPN 68
GR ++E+K+I N+ N QVTF+K NGL KKA EL LC A+VAL++FS GK++ F N
Sbjct: 316 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTN 495
>BM732175 similar to GP|15022157|gb MADS box protein-like protein NGL9
{Medicago sativa}, partial (60%)
Length = 421
Score = 69.7 bits (169), Expect = 1e-12
Identities = 32/63 (50%), Positives = 44/63 (69%)
Frame = +3
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPN 68
GR KIE+K+I N SN QVT+SK NG+ KKA E+ LC A V+L++F+ SGK+ + P+
Sbjct: 42 GRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPS 221
Query: 69 LDT 71
T
Sbjct: 222 TTT 230
>BG789532 similar to GP|13384052|gb| MADS-box transcription factor FBP13
{Petunia x hybrida}, partial (37%)
Length = 414
Score = 69.3 bits (168), Expect = 1e-12
Identities = 31/67 (46%), Positives = 47/67 (69%)
Frame = +3
Query: 10 RQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPNL 69
R +I++KKI N + QVTFSK GLFKKA EL LC A+V L+VFS +GK+F + ++
Sbjct: 162 RTRIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSSM 341
Query: 70 DTVIDRF 76
+ ++ ++
Sbjct: 342 NDIVTKY 362
>TC229191 homologue to UP|Q84U54 (Q84U54) MADS-RIN-like protein, partial
(32%)
Length = 558
Score = 68.9 bits (167), Expect = 2e-12
Identities = 31/56 (55%), Positives = 42/56 (74%)
Frame = +2
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSF 64
GR ++E+K+I N+ N QVTF+K NGL KKA EL LC A+VAL++FS GK++ F
Sbjct: 323 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 490
>TC228392 similar to UP|Q8LLR0 (Q8LLR0) MADS-box protein 4, partial (98%)
Length = 755
Score = 68.9 bits (167), Expect = 2e-12
Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +1
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSF--GH 66
GR ++E+K+I N+ N QVTF+K NGL KKA EL LC A+VAL++FS GK + F G
Sbjct: 43 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSGS 222
Query: 67 PNLDTVIDRFLSLIPTQNDGTMQFIEAHRNANVRELNAQ 105
L T ++R+ N G + A + A V EL++Q
Sbjct: 223 SMLKT-LERYQKC----NYGAPEDNVATKEALVLELSSQ 324
>CD412950 weakly similar to SP|Q9S7Q7|FLC_A FLOWERING LOCUS C protein (MADS
box protein FLOWERING LOCUS F). [Mouse-ear cress],
partial (41%)
Length = 674
Score = 68.2 bits (165), Expect = 3e-12
Identities = 38/125 (30%), Positives = 70/125 (55%)
Frame = -3
Query: 9 GRQKIEMKKISNESNLQVTFSKHHNGLFKKASELCTLCGADVALVVFSPSGKVFSFGHPN 68
G++K+E+K+I N+SN Q+TFSK GL KKA EL LC A +AL++FS +GK++ + +
Sbjct: 672 GKKKLEIKRIENKSNRQITFSKRRKGLMKKARELSILCDAKLALLIFSSTGKLYELCNGD 493
Query: 69 LDTVIDRFLSLIPTQNDGTMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELSNLHK 128
D+ + +S + + + + ++ ++ + + N E + +E L K
Sbjct: 492 RDSALKLQISGLMKRFLNWSKGDSLYSSSCNVKMRLMMESVENLKKKEHILRNENELLEK 313
Query: 129 ETEAK 133
+ EA+
Sbjct: 312 QIEAQ 298
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,153,054
Number of Sequences: 63676
Number of extensions: 139394
Number of successful extensions: 912
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of query: 228
length of database: 12,639,632
effective HSP length: 94
effective length of query: 134
effective length of database: 6,654,088
effective search space: 891647792
effective search space used: 891647792
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144731.7