BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144731.14 + phase: 0 /pseudo
(1343 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 177 4e-44
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 176 5e-44
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 152 1e-36
BU964506 similar to PIR|C86469|C864 protein F12K21.14 [imported]... 113 5e-25
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 101 3e-21
BI701169 99 1e-20
CO981879 96 1e-19
CO981347 70 3e-18
BI784757 91 4e-18
BI427153 68 3e-11
CO984748 67 4e-11
TC233180 similar to UP|Q944K0 (Q944K0) At1g18030/T10F20_3, parti... 63 8e-10
BI425191 weakly similar to GP|14586969|gb| pol polyprotein {Citr... 63 1e-09
BI424202 62 2e-09
TC213393 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 59 2e-09
CO983154 59 1e-08
BI425121 59 1e-08
BQ296988 similar to GP|21740616|em OSJNBb0089K24.12 {Oryza sativ... 54 5e-07
BE659348 weakly similar to PIR|JC7809|JC78 sulfakinin receptor p... 52 2e-06
BG359773 49 2e-05
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 177 bits (448), Expect = 4e-44
Identities = 118/410 (28%), Positives = 196/410 (47%), Gaps = 9/410 (2%)
Frame = +1
Query: 256 CKYCKQNGHVIFDCPIRPPRRTQYPTQALHATTSSAAPPTITSASDGGSLQPEMIQQMVL 315
C YC + GH+ C LH P T +S G + + ++
Sbjct: 1513 CHYCGKYGHIKPFC------------YHLHGH-----PHHGTQSSSSGRKMMWVPKHKIV 1641
Query: 316 AALSNMGIHGKSSNVSRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITD 375
+ + + + ++ W+LDSG S HMTG E+L N+ + DG+K IT
Sbjct: 1642 SLVVHTSLR---ASAKEDWYLDSGCSRHMTGVKEFLVNIEPC-STSYVTFGDGSKGKITG 1809
Query: 376 VGDINSD----FQDVLVSPGLASNLLSVGQLVDNNCNVNFSRAGCLVQEQVSGKVIAKGP 431
+G + D VL+ GL +NL+S+ QL D NVNF+++ CLV + S +V+ KG
Sbjct: 1810 MGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKS-EVLMKGS 1986
Query: 432 KVGR---LFPLQFISSHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLL-GNKQVV 487
+ L+ Q +S+ S + + + WH++ GH + + + G + G +
Sbjct: 1987 RSKDNCYLWTPQE-TSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK 2163
Query: 488 CTASISCPVCKLAKSKTLPFPSGAHRA-SNCFEMIHSDVWGMSPIASHAHYKYFVTFIDD 546
C C++ K + H+ S E++H D+ G + S +Y +DD
Sbjct: 2164 IEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDD 2343
Query: 547 YSRFTWIYFLRSKSEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGI 606
+SRFTW+ F+R KS+ F +FK+ ++ + +K RS+ G E+ + +F E+ +GI
Sbjct: 2344 FSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGI 2523
Query: 607 LSQRSCPNTPQQNGLAERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
+ S TPQQNG+ ERKNR L + R +L +P W EA++T C+
Sbjct: 2524 THEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 2673
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 176 bits (447), Expect = 5e-44
Identities = 108/340 (31%), Positives = 170/340 (49%), Gaps = 11/340 (3%)
Frame = +1
Query: 328 SNVSRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDINSD----F 383
++ W+LDSG S HMTG E+L N+ + DG+K I +G + D
Sbjct: 1666 ASAKEDWYLDSGCSRHMTGVKEFLLNIEPC-STSYVTFGDGSKGKIIGMGKLVHDGLPSL 1842
Query: 384 QDVLVSPGLASNLLSVGQLVDNNCNVNFSRAGCLVQEQVSGKVIAKGPKV-GRLFPLQFI 442
VL+ GL +NL+S+ QL D NVNF+++ CLV + S +V+ KG + +
Sbjct: 1843 NKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKS-EVLMKGSRSKDNCYLWTPQ 2019
Query: 443 SSHLSLACNNVLNSYED----WHRKLGHPNSTVLSHLFKTGLL-GNKQVVCTASISCPVC 497
+ S C L+S ED WH++ GH + + + G + G + C C
Sbjct: 2020 ETSYSSTC---LSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGEC 2190
Query: 498 KLAKSKTLPFPSGAHRA-SNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFL 556
++ K + H+ S E++H D+ G + S +Y +DD+SRFTW+ F+
Sbjct: 2191 QIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFI 2370
Query: 557 RSKSEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTP 616
R KSE F +FK+ ++ + +K RS+ G E+ + F E+ +GI + S TP
Sbjct: 2371 REKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITP 2550
Query: 617 QQNGLAERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
QQNG+ ERKNR L + R +L +P W EA++T C+
Sbjct: 2551 QQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 2670
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 152 bits (384), Expect = 1e-36
Identities = 99/286 (34%), Positives = 159/286 (54%), Gaps = 5/286 (1%)
Frame = +2
Query: 363 IQIADGNKLSITDVGDINS----DFQDVLVSPGLASNLLSVGQLVD-NNCNVNFSRAGCL 417
I +ADG+++ T +G ++ V+ G N+ S+ QL NC+V F +
Sbjct: 20 ITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDANSFV 199
Query: 418 VQEQVSGKVIAKGPKVGRLFPLQFISSHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFK 477
+QE +G I G + L+ ++ +LS C+ V S + H +LGHP+ + L +
Sbjct: 200 IQECGTGWTIGVGIESHGLY---YLKPNLSWVCSAV-TSPKLLHERLGHPHLSKLK-IMV 364
Query: 478 TGLLGNKQVVCTASISCPVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHY 537
L K + C SC + K +S S R + F +IH D+WG + ++S + Y
Sbjct: 365 PSLEKIKDLFCE---SCQLGKHVRSSXRHVES---RVDSPFLVIHXDIWGPNRVSSMS-Y 523
Query: 538 KYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEF 597
+YFVTFID++S+ T ++ ++ +SE+ S F + ++TQF ++KI RS++ EY S
Sbjct: 524 RYFVTFIDEFSQCTRVFLMKERSEILS-FLTSVNKIKTQFGKTIKILRSDNAKEYFSSVI 700
Query: 598 QEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLLQASVP 643
+ +GIL Q SCP+TPQQN +AERKNRHL++ R+LLL A+ P
Sbjct: 701 SPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEP 838
>BU964506 similar to PIR|C86469|C864 protein F12K21.14 [imported] -
Arabidopsis thaliana, partial (6%)
Length = 431
Score = 113 bits (283), Expect = 5e-25
Identities = 50/92 (54%), Positives = 72/92 (77%)
Frame = +3
Query: 85 TAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNLWTEHSAIIHADV 144
TA MWNYLK++Y Q+N A RFQLE +IA ++Q +L + +FYS F+NLW E++ I++AD+
Sbjct: 3 TAATMWNYLKKVYGQNNEA*RFQLEHDIATFRQDSLSISDFYSQFMNLWAEYTNIVYADL 182
Query: 145 PKASLAAVQEVYNTSRRDQFLMKLRPEFEVVR 176
P L++VQ V+ T++RDQFLMKLR +FE +R
Sbjct: 183 PSEGLSSVQTVHETTKRDQFLMKLRSDFEGIR 278
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 101 bits (251), Expect = 3e-21
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Frame = +1
Query: 494 CPVCKLAKSKTLPFPSG-AHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTW 552
C C++ K FP+G + R +++H D+ + I +H YF+TFIDD+S+ W
Sbjct: 331 CDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLCTVE-IPTHGDNNYFITFIDDFSKKMW 507
Query: 553 IYFLRSKSEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSC 612
+YFL+ KSE + FK F + E Q VK + G EY+S+ + + GI Q +
Sbjct: 508 VYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEYLSYTI--FFEKHGIQHQLTT 681
Query: 613 PNTPQQNGLAERKNRHLLDVTRSLL 637
TPQ NG+ ERKN+ ++D+ R +L
Sbjct: 682 KYTPQHNGVTERKNKTIMDMVRCML 756
>BI701169
Length = 407
Score = 99.4 bits (246), Expect = 1e-20
Identities = 49/98 (50%), Positives = 64/98 (65%)
Frame = +2
Query: 540 FVTFIDDYSRFTWIYFLRSKSEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQE 599
F FIDD+SR TW+YF + K EVF FKKF VE + +K RS+ GGE+ S+EFQ+
Sbjct: 113 FFLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQK 292
Query: 600 YLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLL 637
Y GI +PQQNG+AERKNR +L++ RS+L
Sbjct: 293 YCDDHGIRRPLMVLRSPQQNGVAERKNRTILNMARSML 406
>CO981879
Length = 576
Score = 95.9 bits (237), Expect = 1e-19
Identities = 44/90 (48%), Positives = 59/90 (64%)
Frame = -1
Query: 564 SMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 623
S+FK F ++TQFQ +K+FRS++G EY + + GI+ Q SC +TPQQNG+AE
Sbjct: 573 SIFKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAE 394
Query: 624 RKNRHLLDVTRSLLLQASVPPRFWVEALST 653
RKNRHL +V R+LL Q P W EA+ T
Sbjct: 393 RKNRHLXEVARALLFQNKAPKYXWGEAILT 304
>CO981347
Length = 624
Score = 69.7 bits (169), Expect(2) = 3e-18
Identities = 34/95 (35%), Positives = 56/95 (58%)
Frame = +2
Query: 562 VFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGL 621
+F F++ T + Q +K+ R+++G E++ +F E+ + GI + P+TP QNGL
Sbjct: 104 IF*KFRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGL 283
Query: 622 AERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
AER N +L+ R +LL A +P FW EA +T +
Sbjct: 284 AERMNMTILERVRCMLLSARLPKTFWGEAANTTSY 388
Score = 42.0 bits (97), Expect(2) = 3e-18
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 529 SPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVF 563
S + +H YF+T IDD+SR W+Y L++KSE F
Sbjct: 6 SRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESF 110
>BI784757
Length = 430
Score = 90.5 bits (223), Expect = 4e-18
Identities = 45/127 (35%), Positives = 71/127 (55%)
Frame = +1
Query: 487 VCTASISCPVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDD 546
VC + C + + +P RA E+I+SDV G S +YF++FID+
Sbjct: 64 VCDGCLQCKQSRSTFKQNVPI-----RAKEKLEVIYSDVCGPMQTESLGGNRYFISFIDE 228
Query: 547 YSRFTWIYFLRSKSEVFSMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGI 606
+R W+Y +R KS+ F +F+KF + Q + +KI R+N GGEY+S EFQE+ +GI
Sbjct: 229 LTRKVWVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVSTEFQEFCDQQGI 408
Query: 607 LSQRSCP 613
+ + + P
Sbjct: 409 IHEVTPP 429
>BI427153
Length = 422
Score = 67.8 bits (164), Expect = 3e-11
Identities = 28/48 (58%), Positives = 37/48 (76%)
Frame = +1
Query: 609 QRSCPNTPQQNGLAERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
Q +CP+TPQQNG+AERKN HLL+ RSL+L ++VP W +A+ T CF
Sbjct: 4 QSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACF 147
>CO984748
Length = 810
Score = 67.4 bits (163), Expect = 4e-11
Identities = 51/177 (28%), Positives = 79/177 (43%), Gaps = 38/177 (21%)
Frame = -2
Query: 331 SRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDINSDF------- 383
S+ W+++ GA++H+T S + L N GN+Q+ + +G L IT NS F
Sbjct: 575 SQNWYINYGATHHVTASPQNLMNEVPTSGNEQVFLGNGQGLPITGSTVFNSPFASNVKLT 396
Query: 384 -QDVLVSPGLASNLLSVGQLVDNNCNVNFSRAGCLVQEQVSGKVIAKGP----------- 431
++L P + NL+SV +N F + C+V+ QV G ++ +G
Sbjct: 395 LNNLLHVPHITKNLVSVS*FAKDNVFFEFHSSHCVVKSQVDGSILLRGALSQDGLYVFSN 216
Query: 432 --------KVGRLFPLQFIS--SHLSLACNNVLNSYED---------WHRKLGHPNS 469
VG+ +S S LS CNNV S + WH +LGHP+S
Sbjct: 215 LLNSSFKFTVGKAAANVHMSSLSDLSSHCNNVSTSALNTSNYSLVSLWHNRLGHPSS 45
>TC233180 similar to UP|Q944K0 (Q944K0) At1g18030/T10F20_3, partial (11%)
Length = 916
Score = 63.2 bits (152), Expect = 8e-10
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Frame = +2
Query: 313 MVLAALSNMGIHGKSSNVSRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLS 372
+ +A S+ + +S +DSG ++HMT S Y + GNQ I +A+G+ +
Sbjct: 389 LTMAGKSSSFLSFNASGTENI*IIDSGVTDHMTPHSSYFSSYTFLIGNQHIIVANGSHIP 568
Query: 373 ITDVGDI----NSDFQDVLVSPGLASNLLSVGQLV-DNNCNVNFSRAGCLVQEQVSGKVI 427
I G+I + +VL P L++NLLS+ ++ D NC V F + C+ + G++I
Sbjct: 569 IIGCGNIQLQSSLHLNNVLYVPKLSNNLLSIHKIT*DLNCVVTFFHSHCVF*DLAMGRMI 748
Query: 428 AKGPKVGRLFPLQFIS----SHLSLACNNVLNSYEDW--------HRKLGHPNSTV 471
+ G L+ LQ + +N S E W H+ LGHP +V
Sbjct: 749 GIAKE*GGLYYLQHEDNKECTR*KALTSNHQTSSEPWSSSQIWLQHKCLGHPPFSV 916
>BI425191 weakly similar to GP|14586969|gb| pol polyprotein {Citrus x
paradisi}, partial (7%)
Length = 423
Score = 62.8 bits (151), Expect = 1e-09
Identities = 29/81 (35%), Positives = 46/81 (55%)
Frame = +3
Query: 511 AHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVFSMFKKFL 570
A R++ E++H+D+ + S +YF+TFIDDYS + ++Y L K + + + L
Sbjct: 81 ATRSTQLLEIMHTDICRPFDVNSFGKERYFITFIDDYSHYGYVYLLHEKFQAVDVLEIHL 260
Query: 571 TYVETQFQASVKIFRSNSGGE 591
VE Q VK+ RS+ GGE
Sbjct: 261 NEVERQLDRKVKVVRSDRGGE 323
>BI424202
Length = 421
Score = 62.0 bits (149), Expect = 2e-09
Identities = 35/97 (36%), Positives = 50/97 (51%)
Frame = -3
Query: 460 WHRKLGHPNSTVLSHLFKTGLLGNKQVVCTASISCPVCKLAKSKTLPFPSGAHRASNCFE 519
WHR+LGH + + L G+L A V + +T GA R+SN E
Sbjct: 374 WHRRLGHISIERIKRLVNEGVLSTLDF---ADFETYVDCIKGKQTNKSKKGAKRSSNLLE 204
Query: 520 MIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFL 556
+IH+D+ P KYF+TFIDDYSR+ ++YF+
Sbjct: 203 IIHTDI--CCPDMDANSLKYFITFIDDYSRYMYLYFI 99
>TC213393 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (23%)
Length = 678
Score = 58.9 bits (141), Expect(2) = 2e-09
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Frame = -2
Query: 484 KQVVCTAS----ISCPVCKLAKSKTLPFPSGAH-RASNCFEMIHSDVWGMSPIASHAHYK 538
KQ+V + S +SC C+ K FP R F ++HSDVWG+ +
Sbjct: 389 KQMVSSLSKLPTLSCESCQFGKHVQSSFPYCVICRDRFPFVLVHSDVWGLCHGMPTLESR 210
Query: 539 YFVTFIDDYSRFTWIYFLRSKSEVFSMFKKF 569
YFVTFI+DYS TW++ + ++SE+F +F F
Sbjct: 209 YFVTFIEDYS*QTWLFLMVNRSELF*IFTSF 117
Score = 22.7 bits (47), Expect(2) = 2e-09
Identities = 8/26 (30%), Positives = 16/26 (60%)
Frame = -1
Query: 576 QFQASVKIFRSNSGGEYMSHEFQEYL 601
QF + +S++ EY+S +FQ ++
Sbjct: 99 QFGVLIHTLQSDTTHEYLSQQFQSFM 22
>CO983154
Length = 568
Score = 59.3 bits (142), Expect = 1e-08
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +3
Query: 614 NTPQQNGLAERKNRHLLDVTRSLLLQASVPPRFWVEALSTVCF 656
+TPQQNG+AERKNRHLL+ RSL+L +VP W +A+ T CF
Sbjct: 3 HTPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCF 131
>BI425121
Length = 412
Score = 59.3 bits (142), Expect = 1e-08
Identities = 38/108 (35%), Positives = 53/108 (48%), Gaps = 8/108 (7%)
Frame = +3
Query: 538 KYFVTFIDDYSRFTWIYFLRSKSEV-------FSMFKKFL-TYVETQFQASVKIFRSNSG 589
KY +DDYSR+TW+YFL K E F M K F+ +E + S++I N
Sbjct: 21 KYEFLTVDDYSRYTWVYFLAHKHESLRYFIRGFKMKKVFVFLLLEVTMELSLRILS*N-- 194
Query: 590 GEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLL 637
+ + GI S P TPQ+N + ERKNR L + R++L
Sbjct: 195 ---------HFCERNGIFHNLS*PRTPQENRVVERKNRTLQEKARTIL 311
>BQ296988 similar to GP|21740616|em OSJNBb0089K24.12 {Oryza sativa (japonica
cultivar-group)}, partial (1%)
Length = 408
Score = 53.9 bits (128), Expect = 5e-07
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Frame = -1
Query: 64 IISWILSSIDPQMINNLRSFSTAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQ 123
I SWIL+S++P + ++ A ++W LK ++Q + + +++ EI QG V
Sbjct: 393 IHSWILNSVEPSISRSIVFMDNASDVWLDLKERFSQGDLVRVSEIQQEIYALTQGTRSVT 214
Query: 124 EFYSGFLNLWTEHSAIIHADVPKA---------SLAAVQEVYNTSRRDQFLMKLRPEFEV 174
FYS LW E I+ +P ++ + ++T +FL L EF
Sbjct: 213 TFYSDKKALWEELE--IYMPIPNCTCHHRCSCDAMRLARRHHHTLHVMRFLTGLNDEFNA 40
Query: 175 VRGALLNRNPVPS 187
V+ +L P+PS
Sbjct: 39 VKSQILLIEPLPS 1
>BE659348 weakly similar to PIR|JC7809|JC78 sulfakinin receptor protein
DSK-R1 - fruit fly (Drosophila melanogaster), partial
(6%)
Length = 770
Score = 51.6 bits (122), Expect = 2e-06
Identities = 50/217 (23%), Positives = 89/217 (40%), Gaps = 4/217 (1%)
Frame = -1
Query: 165 LMKLRPEFEVVRGALLNRNPVPSLDTCVGELLREEQRLLTQGTMSHDAFISEPVPVAYAA 224
L + P+F+ +R +L VPSL+ + LLR + ++ + I V V+
Sbjct: 611 LRGMHPDFDHIRDQVLTSQEVPSLENLITRLLRVPSPKIGGNSVDN---IETSVMVSNRG 441
Query: 225 QSRGKGRDMRQVQCFTCKQFGHVARSCTAKFCKYCKQNGHVIFDCPIRPPRRTQYPTQAL 284
G+G Q G R C YCK+ GH C +P +++
Sbjct: 440 GQGGRGN-----------QGGRAGRG-GRP*CSYCKRVGHTQDTCY----SIHGFPGKSV 309
Query: 285 HATTSSAAPPTITSASDGGSLQPEMIQQM----VLAALSNMGIHGKSSNVSRPWFLDSGA 340
+ + S + A LQ + ++ V++ ++ + N PW +DSGA
Sbjct: 308 NISKSETSEIKFLEADYQEYLQLKATKESQTSSVISGHNSTACISQVGNNQSPWIIDSGA 129
Query: 341 SNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVG 377
S+H+ +S L I +ADG++++ T +G
Sbjct: 128 SDHIASNSSLF*FLSPPKIPHFITLADGSRVATTGIG 18
>BG359773
Length = 382
Score = 48.5 bits (114), Expect = 2e-05
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Frame = -1
Query: 589 GGEYMSH---------EFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLLQ 639
GGEY F + +Q +GI +Q + PQ NG++E++NR L+D+ S+L+
Sbjct: 373 GGEYYGRYDETEQYXGPFAKLIQKRGICAQYTMLGIPQ*NGVSEKRNRILMDMVTSMLIN 194
Query: 640 ASVPPRFWVEALSTVCF 656
++P W+ AL V +
Sbjct: 193 LTLPISLWMYALKIVMY 143
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.338 0.147 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,205,815
Number of Sequences: 63676
Number of extensions: 1080868
Number of successful extensions: 10877
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 10398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10796
length of query: 1343
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1234
effective length of database: 5,698,948
effective search space: 7032501832
effective search space used: 7032501832
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144731.14