TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144726.5 - phase: 0 /pseudo
         (293 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC222574 similar to UP|Q8H1H1 (Q8H1H1) Translin-associated facto...   388  e-110
TC216417 similar to UP|Q7XJ64 (Q7XJ64) At1g15860, partial (87%)        28  3.7
BE057158                                                               28  6.4

>TC222574 similar to UP|Q8H1H1 (Q8H1H1) Translin-associated factor X
           (Fragment), complete
          Length = 1036

 Score =  388 bits (996), Expect(2) = e-110
 Identities = 199/252 (78%), Positives = 220/252 (86%)
 Frame = +2

Query: 22  QRLHQSILLFFDFGFSTVTGTNFQNTSKRPKTMSIATDTATVTDSAMKEPFTKYTEYLNN 81
           Q LH      F      + GTN Q++ KR +TM+ ++   T  + A+KE F++YT+ LN+
Sbjct: 2   QMLHSLRFSLFMASKHRIAGTNIQSSPKRARTMATSS---TAIEPALKEAFSRYTQCLND 172

Query: 82  LNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQHVSRLVKEL 141
           LNDKRERVVKASRD+TMNSKKVIFQVHRMSKYNK E+LEKAEKDLAAVT+Q++SRLVKEL
Sbjct: 173 LNDKRERVVKASRDVTMNSKKVIFQVHRMSKYNKVEILEKAEKDLAAVTDQYMSRLVKEL 352

Query: 142 QGTDFWKLRRAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTLLPLSDPSLQPLQINIL 201
           QGTDFWKLRRAYSPGIQEYVEAATF  FCK+GTLLKLDEINKTLLPLSDPSL PLQINIL
Sbjct: 353 QGTDFWKLRRAYSPGIQEYVEAATFYGFCKSGTLLKLDEINKTLLPLSDPSLDPLQINIL 532

Query: 202 DYILGLADLTGELMRLAIGRISDGELEFAEKICSFARDIYRELTLVVPHMDDSSDMKTKM 261
           DYILG+ADLTGELMRLAIGRISDGELEFAEKIC FARDIYRELTLVVPHMDDSSDMKTKM
Sbjct: 533 DYILGVADLTGELMRLAIGRISDGELEFAEKICRFARDIYRELTLVVPHMDDSSDMKTKM 712

Query: 262 ETMLQSVMKIEN 273
           + MLQSVMKIEN
Sbjct: 713 DVMLQSVMKIEN 748



 Score = 29.3 bits (64), Expect(2) = e-110
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +3

Query: 274 VFMSEDQSIYHFWDQMIQVL 293
           VFM E QSI+HF D  IQVL
Sbjct: 759 VFM*EGQSIFHFLDPTIQVL 818


>TC216417 similar to UP|Q7XJ64 (Q7XJ64) At1g15860, partial (87%)
          Length = 826

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 26/98 (26%), Positives = 46/98 (46%)
 Frame = +1

Query: 103 VIFQVHRMSKYNKDEVLEKAEKDLAAVTNQHVSRLVKELQGTDFWKLRRAYSPGIQEYVE 162
           ++F VH+  +Y+K ++ ++  + L A+    VS+L   L   D  K  R  S     Y  
Sbjct: 205 IMFIVHKQQRYSKQQI*DEWRRGLKALRADTVSKLKNLL--PDLEKEVRRPSNFADFYSY 378

Query: 163 AATFCSFCKNGTLLKLDEINKTLLPLSDPSLQPLQINI 200
           A  +C   +    + ++ I + LL L   S  P Q+N+
Sbjct: 379 AFQYCLTEEKQKSIDIESICE-LLTLVLGSTFPAQVNL 489


>BE057158 
          Length = 409

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 4   SFSSSFHRLSLFMASEKTQRLHQSILLFFDFGFSTVT 40
           S S  + R+ +   ++    LH +I LF+ F FST+T
Sbjct: 406 SHSHVYMRMKVIFYNKYIFLLHSTIFLFYLFNFSTIT 296


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,461,443
Number of Sequences: 63676
Number of extensions: 113411
Number of successful extensions: 581
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of query: 293
length of database: 12,639,632
effective HSP length: 97
effective length of query: 196
effective length of database: 6,463,060
effective search space: 1266759760
effective search space used: 1266759760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)