
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144724.6 + phase: 0
(1523 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 682 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 678 0.0
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 236 3e-73
TC232995 230 3e-60
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 229 9e-60
NP004897 gag-protease polyprotein 214 2e-55
TC213445 130 1e-49
BM143109 177 3e-44
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 172 1e-42
AI959950 169 1e-41
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 166 9e-41
AI855982 164 2e-40
CO983516 160 4e-39
CF920770 146 6e-35
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 131 2e-30
BI321712 127 5e-29
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 126 8e-29
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 120 3e-27
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 120 6e-27
BU548243 119 1e-26
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 682 bits (1759), Expect = 0.0
Identities = 344/653 (52%), Positives = 452/653 (68%), Gaps = 7/653 (1%)
Frame = +1
Query: 869 NVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYD 928
++FG CYIL ++E+ K DPKSD IFLGYST S+ YRV+N +T+TV S++++ D+
Sbjct: 2758 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLS 2937
Query: 929 EHSKPKENEDTEVPTLQNVPV-----QNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHP 983
K ED NV +N EN+ D+ N +S R +M HP
Sbjct: 2938 PARKKDVEEDVRTSG-DNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKM---HP 3105
Query: 984 TDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNK 1041
+ IIG GV TR + +N +S++EPK++ EA+ D+ WI AM+EEL QF+RN+
Sbjct: 3106 KELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNE 3285
Query: 1042 VWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARL 1101
VW LVP + +IGT+W+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARL
Sbjct: 3286 VWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARL 3465
Query: 1102 EAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALY 1161
E+IR+LL A KL+QMDVKSAFLNG+LNEEVYV QP GF + P+HV++L KALY
Sbjct: 3466 ESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALY 3645
Query: 1162 GLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMC 1221
GLKQAPRAWY+RL+ FL + G+ +G ID TLF K +L+I Q+YVDDI+FG +M
Sbjct: 3646 GLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 3825
Query: 1222 EEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTP 1281
F MQSEFEMS++GEL +FLGLQ+KQ + IF+SQ +Y K+I+KK+ M A TP
Sbjct: 3826 RHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTP 4005
Query: 1282 MHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAV 1341
L KDE+G S+ + YR MIGSLLYLTASRPDI +AVG+CAR+Q K SHLT V
Sbjct: 4006 APTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQV 4185
Query: 1342 KRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCR 1401
KRI +Y+ GT+D G+ Y S+ LV YCDAD+AG +RKSTSG C +LG LI W +
Sbjct: 4186 KRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSK 4365
Query: 1402 KQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQH 1461
KQN ++LST EAEY++A S CSQ++W++ L++Y++ + +YCDN SAIN+SKNP+QH
Sbjct: 4366 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 4545
Query: 1462 SRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
SR+KHI+I+HH+IRD V K I L VDTE Q+ADIFTK L ++F L+ KL
Sbjct: 4546 SRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKL 4704
Score = 396 bits (1018), Expect = e-110
Identities = 280/882 (31%), Positives = 430/882 (48%), Gaps = 25/882 (2%)
Frame = +1
Query: 9 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPT--NKEGA----VKA 62
EGG NRPP+ DGSNY +WK +M FL+S D+ W + G P + EG +K
Sbjct: 16 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 195
Query: 63 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKET 122
+ W+ +E L NSKA L + ++ CT AK W+ LKI HEGTS VK +
Sbjct: 196 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMS 375
Query: 123 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRP 182
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 376 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 555
Query: 183 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQE 242
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK + LA ++ DE ++
Sbjct: 556 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRAEKKSKNLAFVSN-------DEGEED 711
Query: 243 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRK--------------KFPKTNISIKT 288
+L+ +E + + L+ K+ +++ R ++ +K K+ K + +K
Sbjct: 712 EYDLDT--DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRS-DVKP 882
Query: 289 EADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGL 348
K + C+GC GH ECP K RK + +ESDS D + G+
Sbjct: 883 SHSKG-IQCHGCEGYGHIIAECPTHLKKHRKG--LSVCQSDTESEQESDSDRDVNALTGI 1053
Query: 349 MAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNK 408
++D + ++ + +L L S + + L K +++++ EKE + +
Sbjct: 1054FETAEDSSDT---DSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEE 1224
Query: 409 YDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGF 468
E + + L +M++ + +N+ S+ E +LL K + GF
Sbjct: 1225ISELKGEVGFLNSKLENMTKSIKMLNKG--------SDTLDEVLLLGKNAGNQRG--LGF 1374
Query: 469 IKSTE---TFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRV-KCCFCDKYGHNES 524
+ T V ++N++ + S+ G K+K + +C +C KYGH +
Sbjct: 1375NPKSAGRTTMTEFVPAKNRTGATMS---QHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKP 1545
Query: 525 VCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRKDLLE 584
C+ +L H +S +S+K K +K+ + + R E
Sbjct: 1546FCY-----------HLHGHPHHGTQSSNSRK----KMMWVPKHKAVSLVVHTSLRASAKE 1680
Query: 585 ELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGKIRGKGTIGNLNSA 644
+ LDSGCSRHMTG ++ L E VTFG+ KGKI G G + +
Sbjct: 1681DWY--------LDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLP 1836
Query: 645 RIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLEL 704
+ V V+GL NL+SISQLCD GF V F + C V S L + N Y+
Sbjct: 1837SLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTP 2016
Query: 705 NDMPAES-CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVK 763
+ S C S E + IWH+R GH+ ++ + K+ VRG+P + E+ RIC C
Sbjct: 2017QETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQI 2196
Query: 764 GKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKH 823
GKQVK S + ++ +T + LELLH+DL GP+Q SL GKRY +V+VDDFSRFTWV F++
Sbjct: 2197GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIRE 2376
Query: 824 KDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 865
K E+FE F+ R+Q EK I +RSDHG EFEN+ F F
Sbjct: 2377KSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEF 2502
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 678 bits (1750), Expect = 0.0
Identities = 342/653 (52%), Positives = 449/653 (68%), Gaps = 7/653 (1%)
Frame = +1
Query: 869 NVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYD 928
++FG CYIL ++E+ K DPKSD IFLGYST S+ YRV+N +T+TV S++++ D+
Sbjct: 2761 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLT 2940
Query: 929 EHSKPKENEDTEVPTLQNVP-----VQNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHP 983
K ED NV +N EN+ D+ N + R +M HP
Sbjct: 2941 PARKKDVEEDVRTSG-DNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKM---HP 3108
Query: 984 TDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNK 1041
+ IIG GV TR + +N +S++EPK++ EA+ D+ WI AM+EEL QF+RN+
Sbjct: 3109 KELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNE 3288
Query: 1042 VWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARL 1101
VW LVP + +IGT+W+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARL
Sbjct: 3289 VWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARL 3468
Query: 1102 EAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALY 1161
E+IR+LL A KL+QMDVKSAFLNG+LNEE YV QP GF++ P+HV++L KALY
Sbjct: 3469 ESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALY 3648
Query: 1162 GLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMC 1221
GLKQAPRAWY+RL+ FL + G+ +G ID TLF K +L+I Q+YVDDI+FG +M
Sbjct: 3649 GLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 3828
Query: 1222 EEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTP 1281
F MQSEFEMS++GEL +FLGLQ+KQ + IF+SQ KY K+I+KK+ M A TP
Sbjct: 3829 RHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTP 4008
Query: 1282 MHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAV 1341
L KDE+G S+ + YR MIGSLLYLTASRPDI +AVG+CAR+Q K SHL V
Sbjct: 4009 APTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQV 4188
Query: 1342 KRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCR 1401
KRI +Y+ GT+D G+ Y S LV YCDAD+AG +RKSTSG C +LG LI W +
Sbjct: 4189 KRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSK 4368
Query: 1402 KQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQH 1461
KQN ++LST EAEY++A S CSQ++W++ L++Y++ + +YCDN SAIN+SKNP+QH
Sbjct: 4369 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 4548
Query: 1462 SRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
SR+KHI+I+HH+IRD V K I L VDTE Q+ADIFTK L ++F L+ KL
Sbjct: 4549 SRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKL 4707
Score = 400 bits (1029), Expect = e-111
Identities = 279/894 (31%), Positives = 421/894 (46%), Gaps = 37/894 (4%)
Frame = +1
Query: 9 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNG---------DFVPTNKEGA 59
EGG NRPP+ DG+NY +WK +M FL+S D+ W + G + PTN+
Sbjct: 16 EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNE--- 186
Query: 60 VKAKSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHV 119
+K + W+ +E L NSKA L + ++ CT AK W+ LK HEGTS V
Sbjct: 187 LKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKV 366
Query: 120 KETRIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSM 179
K +R+ + KFE +M E E I + + I N +LG+ + +RKILR LP
Sbjct: 367 KMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKR 546
Query: 180 WRPMVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDED 239
+ VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK + LA ++ DE
Sbjct: 547 FDMKVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRTEKKSKNLAFVSN-------DEG 702
Query: 240 VQEPQELEEVHEEEAEDELALISKRIQRMMLRRNQ------------IRKKFPKTNISIK 287
++ +L+ +E + + L+ K+ +++ R ++ IRK S +
Sbjct: 703 EEDEYDLDT--DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKKSDE 876
Query: 288 TEADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMG 347
+ + C+GC GH K ECP K QRK + D ES+ + D+D D+
Sbjct: 877 KPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKG-----LSVCRSDDTESEQESDSDRDVN 1041
Query: 348 LMA--------QSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLI------- 392
+ SD + E+ + Y++L K + +L L +L
Sbjct: 1042ALTGRFESAEDSSDTDSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHE 1221
Query: 393 KELSEIKEEKEILQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENI 452
+E+SE+K E L +K + K+IK+L DM ++ ++ + + +
Sbjct: 1222EEISELKGEVGFLNSKLENMTKSIKMLNKGS-DMLDEVLQLGKNVGNQRGLGFNHKSAGR 1398
Query: 453 LLKKEVETLKKDLTGFIKSTETFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRVK 512
E K TG S ++ Q KS +K + +
Sbjct: 1399TTMTEFVPAKNS-TGATMSQHRSRHHGTQQKKSKRK---------------------KWR 1512
Query: 513 CCFCDKYGHNESVCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHK 572
C +C KYGH + C+ +L H +S SS + + H
Sbjct: 1513CHYCGKYGHIKPFCY-----------HLHGHPHHGTQSSSSGRKMMWVPKHKIVSLVVHT 1659
Query: 573 RQNVTFRKDLLEELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGKI 632
+ ++D LDSGCSRHMTG ++ + E VTFG+ KGKI
Sbjct: 1660SLRASAKEDWY------------LDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKI 1803
Query: 633 RGKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFS 692
G G + + + V V+GL NL+SISQLCD GF V F + C V S L
Sbjct: 1804TGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKG 1983
Query: 693 GSRRKNLYVLELNDMPAES-CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKIS 751
+ N Y+ + S C S E + IWH+R GH+ ++ + K+ VRG+P +
Sbjct: 1984SRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK 2163
Query: 752 FEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDD 811
E+ RIC C GKQVK S + ++ +T + LELLH+DL GP+Q SL GKRY +V+VDD
Sbjct: 2164IEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDD 2343
Query: 812 FSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 865
FSRFTWV F++ K ++FE F+ R+Q EK I +RSDHG EFEN+ F F
Sbjct: 2344FSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEF 2505
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 236 bits (603), Expect(2) = 3e-73
Identities = 121/184 (65%), Positives = 141/184 (75%)
Frame = +3
Query: 1202 LIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEK 1261
LI+ +YVDDIIFGAT +MC+EF LM+ FE SM GEL F LGLQI Q GIFI QEK
Sbjct: 489 LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668
Query: 1262 YVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVF 1321
Y K LK+++M+EAK M+TPMH S+ +DKDE G S KEY GMI SL YLT+SRPDIVF
Sbjct: 669 YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848
Query: 1322 AVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVER 1381
V LCARFQ+ K SH+TAVKRI RYLVGTT+ LW++K S FDL+ YCD +AGDKVER
Sbjct: 849 VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVER 1028
Query: 1382 KSTS 1385
KSTS
Sbjct: 1029 KSTS 1040
Score = 59.3 bits (142), Expect(2) = 3e-73
Identities = 27/47 (57%), Positives = 33/47 (69%)
Frame = +2
Query: 1155 KLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDL 1201
K +YGLKQA RAWY+RLS+FL+ NGF+RG D LFRK +L
Sbjct: 347 KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNL 487
>TC232995
Length = 1009
Score = 230 bits (587), Expect = 3e-60
Identities = 113/173 (65%), Positives = 138/173 (79%)
Frame = +2
Query: 1138 VSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTH 1197
V QPPGF +KPNHV+KL KALYGLKQAPRAWY+RLS FL+E FSRGK+DTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1198 NTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFI 1257
+ D+L+VQ+YVDDIIFG+T +C+EFS MQSEFEMSMMGEL +FLGLQIKQ GIFI
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1258 SQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLL 1310
+Q KY K+++K++ M+ AK MSTPM + LDKDESG+SI K+YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 229 bits (583), Expect = 9e-60
Identities = 107/152 (70%), Positives = 129/152 (84%)
Frame = -3
Query: 1029 AMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEG 1088
AM+EEL+QFERN VW LV ++ +IGT+WVFRNKLDE G ++RNKARLVA+GYNQ+EG
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 1089 IDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKE 1148
IDY+ET+APVARLE IR+LLAY + + KL+QMDVKSAFLNG + EEVYV QPPGF +
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 1149 KPNHVFKLTKALYGLKQAPRAWYDRLSTFLIE 1180
KP HV+KL KALYGLKQAPRAWY+R+S FL+E
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>NP004897 gag-protease polyprotein
Length = 1923
Score = 214 bits (545), Expect = 2e-55
Identities = 179/663 (26%), Positives = 288/663 (42%), Gaps = 33/663 (4%)
Frame = +1
Query: 9 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPT--NKEG----AVKA 62
EGG NRPP+ DG+NY +WK +M FL+S D+ W + P + EG +K
Sbjct: 16 EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKP 195
Query: 63 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKET 122
+ W+ +E L NSKA L + ++ CT AK W+ LK HEGTS VK +
Sbjct: 196 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMS 375
Query: 123 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRP 182
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 376 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDM 555
Query: 183 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQE 242
VTAI +A+D+ ++ +++LIGSL+ E+ L D+ KK + LA ++ DE ++
Sbjct: 556 KVTAIEEAQDICNLRVDELIGSLQTFELGLS-DRTEKKSKNLAFVSN-------DEGEED 711
Query: 243 PQELEEVHEEEAEDELALISKRIQRMMLRRNQ------------IRKKFPKTNISIKTEA 290
+L+ +E + + L+ K+ +++ R ++ IRK S + +
Sbjct: 712 EYDLDT--DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPS 885
Query: 291 DKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLMA 350
C+GC GH K ECP K QRK + D ES+ + D+D D+ +
Sbjct: 886 HSKGFQCHGCEGYGHIKAECPTHLKKQRKG-----LSVCRSDDTESEQESDSDRDVNALT 1050
Query: 351 --------QSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLI-------KEL 395
SD + E+ + + Y++L K + +L L +L +E+
Sbjct: 1051GRFESAEDSSDTDSEITFDELATSYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 1230
Query: 396 SEIKEEKEILQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLK 455
SE+K E L +K + K+IK+L DM ++ ++ + + + +
Sbjct: 1231SELKGEVGFLNSKLENMTKSIKMLNKGS-DMLDEVLQLGKNVGNQRGLGFNHKSAGRITM 1407
Query: 456 KEVETLKKDLTGFIKSTETFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRVKCCF 515
E K TG S ++ Q KS +K + +C +
Sbjct: 1408TEFVPAKIS-TGATMSQHRSRHHGTQQKKSKRK---------------------KWRCHY 1521
Query: 516 CDKYGHNESVCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQN 575
C KYGH + C+ +L H +S SS++ + H
Sbjct: 1522CGKYGHIKPFCY-----------HLHGHPHHGTQSSSSRRKMMWVPKHKIVSLVVHTSLR 1668
Query: 576 VTFRKDLLEELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGKIRGK 635
+ ++D LDSGCSRHMTG ++ + E VTFG+ KGKI G
Sbjct: 1669ASAKEDWY------------LDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGM 1812
Query: 636 GTI 638
G +
Sbjct: 1813GKL 1821
>TC213445
Length = 705
Score = 130 bits (328), Expect(2) = 1e-49
Identities = 59/98 (60%), Positives = 76/98 (77%)
Frame = +1
Query: 1378 KVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSL 1437
K +R+STS +C F+G AL+ W +KQN++ LST EAEY+SA S +QI W+R QL DY L
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1438 RYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIR 1475
+ +PI CDNTSAINLSKN I +SR+KHIEI+HHF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 86.3 bits (212), Expect(2) = 1e-49
Identities = 40/68 (58%), Positives = 51/68 (74%)
Frame = +2
Query: 1305 MIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSF 1364
MI S LYL+ SRP I+F+V +C R+Q KESHL+ +KRI RYL+G +LGLWY K SS+
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1365 DLVAYCDA 1372
+LV Y DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 177 bits (449), Expect = 3e-44
Identities = 87/137 (63%), Positives = 104/137 (75%)
Frame = +1
Query: 1140 QPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNT 1199
QPP N EKPNHVFKL K LYGLKQA RAWY+ LS FL++ GFS+GK+DT LF
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1200 DLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQ 1259
D+L+VQ+YVDDIIFG+T +C++FS MQ+EFEMSMM EL FFLGLQIKQ NGIFISQ
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1260 EKYVKDILKKYKMNEAK 1276
KY KD++ ++ M K
Sbjct: 364 SKYCKDLIHRFGMENDK 414
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 172 bits (435), Expect = 1e-42
Identities = 95/225 (42%), Positives = 133/225 (58%), Gaps = 4/225 (1%)
Frame = +1
Query: 1295 KSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDL 1354
+ + E+R +IGSL YL SRP+I FAV L +RF + SH+ A KR+ R + GT
Sbjct: 1 RGVDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGS 180
Query: 1355 GLWY---RKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTT 1411
G+ + K DL+ Y D+D+ D + KST G A + S +KQ+ IALST
Sbjct: 181 GVLFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTC 360
Query: 1412 EAEYVSAASCCSQILWVRNQLEDYSLRYTS-VPIYCDNTSAINLSKNPIQHSRSKHIEIK 1470
EAEYV+A+ Q +W+ N LE+ LR V + DN SAINL+K+P H RSKHIE++
Sbjct: 361 EAEYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELR 540
Query: 1471 HHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKLL 1515
H+IRD V K N+ + + E QLAD+ TKP+ RF + +L+
Sbjct: 541 FHYIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSELV 675
>AI959950
Length = 466
Score = 169 bits (427), Expect = 1e-41
Identities = 83/132 (62%), Positives = 105/132 (78%)
Frame = -1
Query: 1027 IKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQ 1086
+KAM+EEL QF++N V LV + K ++G +W+F NKLDE+GKVVR KARLVA+GY+QQ
Sbjct: 397 MKAMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQ 218
Query: 1087 EGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFIN 1146
EGIDY +TFA VARLE I ILL++A + ++KL+QMDVKSAFLNG + +EVYV QPPGF N
Sbjct: 217 EGIDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFEN 38
Query: 1147 KEKPNHVFKLTK 1158
+ HVFKL K
Sbjct: 37 ETLHQHVFKLNK 2
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -2
Query: 1007 AMISQMEPKSINEAIIDDSWIKAMKEELSQFER 1039
A+I +M+PK I+EAI DD+ K K+ L F+R
Sbjct: 456 ALIFEMKPKHIDEAIKDDN**KRCKKNLISFKR 358
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 166 bits (419), Expect = 9e-41
Identities = 77/111 (69%), Positives = 96/111 (86%)
Frame = +3
Query: 1013 EPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVV 1072
EPK+I EAI+DD+WI M+EEL+QFERN VW LV ++ +IGT+WVFRNKLDE G ++
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 1073 RNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDV 1123
RNKARLVA+GYNQ+EGIDY+ET+APVARLEAIR+LLAYA+ + KL+QMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>AI855982
Length = 484
Score = 164 bits (416), Expect = 2e-40
Identities = 85/161 (52%), Positives = 111/161 (68%), Gaps = 2/161 (1%)
Frame = +2
Query: 983 PTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERN 1040
P D IIG + GV TR S +D NNMA +S +EPK+I EAI+DD+WI AM+EEL+QFERN
Sbjct: 2 PLDNIIGDISKGVTTRHSLKDLCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQFERN 181
Query: 1041 KVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVAR 1100
VW LV + +I T+WVFRNKLDE ++ +KARLVA+GYNQ +G+DY+ T+A +AR
Sbjct: 182 NVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYASIAR 361
Query: 1101 LEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQP 1141
L I + L+Y + L+ SA L+G L EVYV QP
Sbjct: 362 L*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>CO983516
Length = 724
Score = 160 bits (405), Expect = 4e-39
Identities = 77/123 (62%), Positives = 95/123 (76%)
Frame = +2
Query: 1092 DETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPN 1151
D+ F PVARLE+IR+LL A KL+QMDVKSAFLNG+LNEEVYV QP GFI+ P+
Sbjct: 356 DKEFHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPD 535
Query: 1152 HVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDI 1211
HV++L KALYGLKQAPRAWY+RL+ L + G+ +G ID TLF K +L+I Q+YVDDI
Sbjct: 536 HVYRLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDI 715
Query: 1212 IFG 1214
+FG
Sbjct: 716 VFG 724
>CF920770
Length = 581
Score = 146 bits (369), Expect = 6e-35
Identities = 74/187 (39%), Positives = 111/187 (58%), Gaps = 13/187 (6%)
Frame = -2
Query: 39 DNDMWAVITNGDFVPTNKEGAV-------------KAKSAWSTDEKAQVLLNSKARLFLS 85
D ++W I G ++PT E K + WS +++ +V N KA+ ++
Sbjct: 574 DLNIWEAIEIGPYIPTTVERVSIDGSSSSESITIEKPRDRWSEEDRKRVQYNLKAKNIIT 395
Query: 86 CALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMSENETIDEM 145
AL M+E RV C +AK +WDTL++ HEGT+ VK +RI+ ++E+F M+ NE I M
Sbjct: 394 SALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVKRSRINALTHEYELFRMNTNENIQSM 215
Query: 146 YARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRPMVTAITQAKDLKSMNLEDLIGSL 205
RFT IVN + +LGK + D I K+LRCL W+P VTAI++++DL +M+L L G L
Sbjct: 214 QKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREWQPKVTAISESRDLSNMSLATLFGKL 35
Query: 206 RAHEVVL 212
+ HE+ L
Sbjct: 34 QEHEMEL 14
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 131 bits (330), Expect = 2e-30
Identities = 66/130 (50%), Positives = 91/130 (69%)
Frame = -2
Query: 1046 VPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIR 1105
VP KT +G RWV+ K+ G+V R KARLVA+GY Q GIDY +TF+PVA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1106 ILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQ 1165
+ LA AA L Q+D+K+AFL+G L E++Y+ QPPGF+ + + V KL ++LYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1166 APRAWYDRLS 1175
+PRAW+ + S
Sbjct: 46 SPRAWFGKFS 17
>BI321712
Length = 399
Score = 127 bits (318), Expect = 5e-29
Identities = 58/124 (46%), Positives = 86/124 (68%)
Frame = -3
Query: 1206 VYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKD 1265
+YVDD+IF M EEF M +EFEM+ MG + ++LG+++KQ GIFI+QE Y K+
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1266 ILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGL 1325
+LKK+KM++A + TPM S L K E G+++ Y+ +IGSL YLT +RPDI++ VG+
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1326 CARF 1329
+R+
Sbjct: 19 VSRY 8
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 126 bits (316), Expect = 8e-29
Identities = 63/158 (39%), Positives = 98/158 (61%), Gaps = 3/158 (1%)
Frame = +2
Query: 1360 KGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAA 1419
KG++ L YCDAD+AG ++R+STSG C F+G L+ W +KQ +A S+ EAEY S A
Sbjct: 2 KGNT-QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMA 178
Query: 1420 SCCSQILWVRNQLEDYSLRY---TSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRD 1476
+++W++ L++ LR+ + +YCDN +A++++ NP+ H R+KHIEI HFIR+
Sbjct: 179 MVTCELMWIKQFLQE--LRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIRE 352
Query: 1477 HVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
+ K I F+ + +Q DI TK L + + KL
Sbjct: 353 KLLSKEIVTEFIGSNDQPVDILTKSLRGPKIQIVCSKL 466
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 120 bits (302), Expect = 3e-27
Identities = 59/136 (43%), Positives = 89/136 (65%), Gaps = 1/136 (0%)
Frame = +3
Query: 1380 ERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSL-R 1438
+RKST+G F+G W +KQ + LST EAEYV+A SC +W+RN L++ + +
Sbjct: 12 DRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMPQ 191
Query: 1439 YTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIF 1498
+ I DN SA+ L+KNP+ H +SKHI+ ++HFIR+ ++KK + L +V +++Q ADIF
Sbjct: 192 EEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADIF 371
Query: 1499 TKPLVEDRFNFLKEKL 1514
TKPL + F L+ L
Sbjct: 372 TKPLKLETFVKLRSML 419
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 120 bits (300), Expect = 6e-27
Identities = 60/128 (46%), Positives = 82/128 (63%)
Frame = +3
Query: 1014 PKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVR 1073
P +I EA+ W +AM +E+ E N W LVP KT +G RWV+ K+ GKV R
Sbjct: 21 PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200
Query: 1074 NKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLN 1133
KARLVA+GY Q GI+Y +TF+PV L +R+ LA AA + L Q+D+K+AFL+G L
Sbjct: 201 LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380
Query: 1134 EEVYVSQP 1141
E++Y+ QP
Sbjct: 381 EDIYMEQP 404
>BU548243
Length = 599
Score = 119 bits (298), Expect = 1e-26
Identities = 62/149 (41%), Positives = 87/149 (57%)
Frame = -1
Query: 1368 AYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILW 1427
A CDA +A D + +ST GS FLG LI W RKQ A S+TEAEY S A +++ W
Sbjct: 596 ALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTW 417
Query: 1428 VRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSF 1487
++ L + + +T I CDN SA+ ++ N + HSR+KH+EI F+ + V K + +
Sbjct: 416 IQALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFH 237
Query: 1488 VDTENQLADIFTKPLVEDRFNFLKEKLLI 1516
+ +Q A I TKPL RF FLK KL +
Sbjct: 236 IPALDQWAGILTKPLSSARFTFLKSKLTV 150
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,803,246
Number of Sequences: 63676
Number of extensions: 825086
Number of successful extensions: 4638
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 4440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4587
length of query: 1523
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1413
effective length of database: 5,635,272
effective search space: 7962639336
effective search space used: 7962639336
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144724.6