Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144724.6 + phase: 0 
         (1523 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             682  0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   678  0.0
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti...   236  3e-73
TC232995                                                              230  3e-60
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ...   229  9e-60
NP004897 gag-protease polyprotein                                     214  2e-55
TC213445                                                              130  1e-49
BM143109                                                              177  3e-44
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro...   172  1e-42
AI959950                                                              169  1e-41
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl...   166  9e-41
AI855982                                                              164  2e-40
CO983516                                                              160  4e-39
CF920770                                                              146  6e-35
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi...   131  2e-30
BI321712                                                              127  5e-29
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...   126  8e-29
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)       120  3e-27
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V...   120  6e-27
BU548243                                                              119  1e-26

>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  682 bits (1759), Expect = 0.0
 Identities = 344/653 (52%), Positives = 452/653 (68%), Gaps = 7/653 (1%)
 Frame = +1

Query: 869  NVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYD 928
            ++FG  CYIL ++E+  K DPKSD  IFLGYST S+ YRV+N +T+TV  S++++ D+  
Sbjct: 2758 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLS 2937

Query: 929  EHSKPKENEDTEVPTLQNVPV-----QNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHP 983
               K    ED       NV       +N EN+    D+ N      +S  R  +M   HP
Sbjct: 2938 PARKKDVEEDVRTSG-DNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKM---HP 3105

Query: 984  TDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNK 1041
             + IIG    GV TR    +  +N   +S++EPK++ EA+ D+ WI AM+EEL QF+RN+
Sbjct: 3106 KELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNE 3285

Query: 1042 VWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARL 1101
            VW LVP  +   +IGT+W+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARL
Sbjct: 3286 VWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARL 3465

Query: 1102 EAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALY 1161
            E+IR+LL  A     KL+QMDVKSAFLNG+LNEEVYV QP GF +   P+HV++L KALY
Sbjct: 3466 ESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALY 3645

Query: 1162 GLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMC 1221
            GLKQAPRAWY+RL+ FL + G+ +G ID TLF K    +L+I Q+YVDDI+FG    +M 
Sbjct: 3646 GLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 3825

Query: 1222 EEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTP 1281
              F   MQSEFEMS++GEL +FLGLQ+KQ  + IF+SQ +Y K+I+KK+ M  A    TP
Sbjct: 3826 RHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTP 4005

Query: 1282 MHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAV 1341
                  L KDE+G S+ +  YR MIGSLLYLTASRPDI +AVG+CAR+Q   K SHLT V
Sbjct: 4006 APTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQV 4185

Query: 1342 KRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCR 1401
            KRI +Y+ GT+D G+ Y   S+  LV YCDAD+AG   +RKSTSG C +LG  LI W  +
Sbjct: 4186 KRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSK 4365

Query: 1402 KQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQH 1461
            KQN ++LST EAEY++A S CSQ++W++  L++Y++    + +YCDN SAIN+SKNP+QH
Sbjct: 4366 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 4545

Query: 1462 SRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
            SR+KHI+I+HH+IRD V  K I L  VDTE Q+ADIFTK L  ++F  L+ KL
Sbjct: 4546 SRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKL 4704



 Score =  396 bits (1018), Expect = e-110
 Identities = 280/882 (31%), Positives = 430/882 (48%), Gaps = 25/882 (2%)
 Frame = +1

Query: 9   EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPT--NKEGA----VKA 62
           EGG  NRPP+ DGSNY +WK +M  FL+S D+  W  +  G   P   + EG     +K 
Sbjct: 16  EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 195

Query: 63  KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKET 122
           +  W+ +E    L NSKA   L   +       ++ CT AK  W+ LKI HEGTS VK +
Sbjct: 196 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMS 375

Query: 123 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRP 182
           R+ +   KFE  +M E E I + +     I N   +LG+  +    +RKILR LP  +  
Sbjct: 376 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 555

Query: 183 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQE 242
            VTAI +A+D+ +M +++LIGSL+  E+ L  D+  KK + LA  ++       DE  ++
Sbjct: 556 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRAEKKSKNLAFVSN-------DEGEED 711

Query: 243 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRK--------------KFPKTNISIKT 288
             +L+   +E   + + L+ K+  +++ R ++ +K              K+ K +  +K 
Sbjct: 712 EYDLDT--DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRS-DVKP 882

Query: 289 EADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGL 348
              K  + C+GC   GH   ECP   K  RK           +  +ESDS  D +   G+
Sbjct: 883 SHSKG-IQCHGCEGYGHIIAECPTHLKKHRKG--LSVCQSDTESEQESDSDRDVNALTGI 1053

Query: 349 MAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNK 408
              ++D  +     ++  + +L      L   S  +  +   L K +++++ EKE  + +
Sbjct: 1054FETAEDSSDT---DSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEE 1224

Query: 409 YDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGF 468
             E +  +  L     +M++  + +N+         S+   E +LL K     +    GF
Sbjct: 1225ISELKGEVGFLNSKLENMTKSIKMLNKG--------SDTLDEVLLLGKNAGNQRG--LGF 1374

Query: 469 IKSTE---TFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRV-KCCFCDKYGHNES 524
              +    T    V ++N++        +  S+  G    K+K +  +C +C KYGH + 
Sbjct: 1375NPKSAGRTTMTEFVPAKNRTGATMS---QHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKP 1545

Query: 525 VCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRKDLLE 584
            C+           +L     H  +S +S+K    K      +K+     + + R    E
Sbjct: 1546FCY-----------HLHGHPHHGTQSSNSRK----KMMWVPKHKAVSLVVHTSLRASAKE 1680

Query: 585 ELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGKIRGKGTIGNLNSA 644
           +          LDSGCSRHMTG ++  L  E      VTFG+  KGKI G G + +    
Sbjct: 1681DWY--------LDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLP 1836

Query: 645 RIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLEL 704
            +  V  V+GL  NL+SISQLCD GF V F  + C V    S  L      + N Y+   
Sbjct: 1837SLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTP 2016

Query: 705 NDMPAES-CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVK 763
            +    S C  S E +  IWH+R GH+ ++ + K+     VRG+P +  E+ RIC  C  
Sbjct: 2017QETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQI 2196

Query: 764 GKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKH 823
           GKQVK S + ++  +T + LELLH+DL GP+Q  SL GKRY +V+VDDFSRFTWV F++ 
Sbjct: 2197GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIRE 2376

Query: 824 KDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 865
           K E+FE F+    R+Q EK   I  +RSDHG EFEN+ F  F
Sbjct: 2377KSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEF 2502


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  678 bits (1750), Expect = 0.0
 Identities = 342/653 (52%), Positives = 449/653 (68%), Gaps = 7/653 (1%)
 Frame = +1

Query: 869  NVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYD 928
            ++FG  CYIL ++E+  K DPKSD  IFLGYST S+ YRV+N +T+TV  S++++ D+  
Sbjct: 2761 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLT 2940

Query: 929  EHSKPKENEDTEVPTLQNVP-----VQNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHP 983
               K    ED       NV       +N EN+    D+ N      +   R  +M   HP
Sbjct: 2941 PARKKDVEEDVRTSG-DNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKM---HP 3108

Query: 984  TDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNK 1041
             + IIG    GV TR    +  +N   +S++EPK++ EA+ D+ WI AM+EEL QF+RN+
Sbjct: 3109 KELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNE 3288

Query: 1042 VWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARL 1101
            VW LVP  +   +IGT+W+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARL
Sbjct: 3289 VWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARL 3468

Query: 1102 EAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALY 1161
            E+IR+LL  A     KL+QMDVKSAFLNG+LNEE YV QP GF++   P+HV++L KALY
Sbjct: 3469 ESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALY 3648

Query: 1162 GLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMC 1221
            GLKQAPRAWY+RL+ FL + G+ +G ID TLF K    +L+I Q+YVDDI+FG    +M 
Sbjct: 3649 GLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 3828

Query: 1222 EEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTP 1281
              F   MQSEFEMS++GEL +FLGLQ+KQ  + IF+SQ KY K+I+KK+ M  A    TP
Sbjct: 3829 RHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTP 4008

Query: 1282 MHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAV 1341
                  L KDE+G S+ +  YR MIGSLLYLTASRPDI +AVG+CAR+Q   K SHL  V
Sbjct: 4009 APTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQV 4188

Query: 1342 KRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCR 1401
            KRI +Y+ GT+D G+ Y   S   LV YCDAD+AG   +RKSTSG C +LG  LI W  +
Sbjct: 4189 KRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSK 4368

Query: 1402 KQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQH 1461
            KQN ++LST EAEY++A S CSQ++W++  L++Y++    + +YCDN SAIN+SKNP+QH
Sbjct: 4369 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 4548

Query: 1462 SRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
            SR+KHI+I+HH+IRD V  K I L  VDTE Q+ADIFTK L  ++F  L+ KL
Sbjct: 4549 SRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKL 4707



 Score =  400 bits (1029), Expect = e-111
 Identities = 279/894 (31%), Positives = 421/894 (46%), Gaps = 37/894 (4%)
 Frame = +1

Query: 9   EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNG---------DFVPTNKEGA 59
           EGG  NRPP+ DG+NY +WK +M  FL+S D+  W  +  G         +  PTN+   
Sbjct: 16  EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNE--- 186

Query: 60  VKAKSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHV 119
           +K +  W+ +E    L NSKA   L   +       ++ CT AK  W+ LK  HEGTS V
Sbjct: 187 LKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKV 366

Query: 120 KETRIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSM 179
           K +R+ +   KFE  +M E E I + +     I N   +LG+  +    +RKILR LP  
Sbjct: 367 KMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKR 546

Query: 180 WRPMVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDED 239
           +   VTAI +A+D+ +M +++LIGSL+  E+ L  D+  KK + LA  ++       DE 
Sbjct: 547 FDMKVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRTEKKSKNLAFVSN-------DEG 702

Query: 240 VQEPQELEEVHEEEAEDELALISKRIQRMMLRRNQ------------IRKKFPKTNISIK 287
            ++  +L+   +E   + + L+ K+  +++ R ++            IRK       S +
Sbjct: 703 EEDEYDLDT--DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKKSDE 876

Query: 288 TEADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMG 347
             +    + C+GC   GH K ECP   K QRK        +   D  ES+ + D+D D+ 
Sbjct: 877 KPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKG-----LSVCRSDDTESEQESDSDRDVN 1041

Query: 348 LMA--------QSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLI------- 392
            +          SD + E+   +    Y++L  K + +L     L     +L        
Sbjct: 1042ALTGRFESAEDSSDTDSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHE 1221

Query: 393 KELSEIKEEKEILQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENI 452
           +E+SE+K E   L +K +   K+IK+L     DM ++  ++ +       +    +    
Sbjct: 1222EEISELKGEVGFLNSKLENMTKSIKMLNKGS-DMLDEVLQLGKNVGNQRGLGFNHKSAGR 1398

Query: 453 LLKKEVETLKKDLTGFIKSTETFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRVK 512
               E    K   TG   S    ++    Q KS +K                     + +
Sbjct: 1399TTMTEFVPAKNS-TGATMSQHRSRHHGTQQKKSKRK---------------------KWR 1512

Query: 513 CCFCDKYGHNESVCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHK 572
           C +C KYGH +  C+           +L     H  +S SS +           +   H 
Sbjct: 1513CHYCGKYGHIKPFCY-----------HLHGHPHHGTQSSSSGRKMMWVPKHKIVSLVVHT 1659

Query: 573 RQNVTFRKDLLEELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGKI 632
               + ++D              LDSGCSRHMTG ++  +  E      VTFG+  KGKI
Sbjct: 1660SLRASAKEDWY------------LDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKI 1803

Query: 633 RGKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFS 692
            G G + +     +  V  V+GL  NL+SISQLCD GF V F  + C V    S  L   
Sbjct: 1804TGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKG 1983

Query: 693 GSRRKNLYVLELNDMPAES-CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKIS 751
              + N Y+    +    S C  S E +  IWH+R GH+ ++ + K+     VRG+P + 
Sbjct: 1984SRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK 2163

Query: 752 FEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDD 811
            E+ RIC  C  GKQVK S + ++  +T + LELLH+DL GP+Q  SL GKRY +V+VDD
Sbjct: 2164IEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDD 2343

Query: 812 FSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 865
           FSRFTWV F++ K ++FE F+    R+Q EK   I  +RSDHG EFEN+ F  F
Sbjct: 2344FSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEF 2505


>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
          Length = 1213

 Score =  236 bits (603), Expect(2) = 3e-73
 Identities = 121/184 (65%), Positives = 141/184 (75%)
 Frame = +3

Query: 1202 LIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEK 1261
            LI+ +YVDDIIFGAT  +MC+EF  LM+  FE SM GEL F LGLQI Q   GIFI QEK
Sbjct: 489  LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668

Query: 1262 YVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVF 1321
            Y K  LK+++M+EAK M+TPMH S+ +DKDE G   S KEY GMI SL YLT+SRPDIVF
Sbjct: 669  YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848

Query: 1322 AVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVER 1381
             V LCARFQ+  K SH+TAVKRI RYLVGTT+  LW++K S FDL+ YCD  +AGDKVER
Sbjct: 849  VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVER 1028

Query: 1382 KSTS 1385
            KSTS
Sbjct: 1029 KSTS 1040



 Score = 59.3 bits (142), Expect(2) = 3e-73
 Identities = 27/47 (57%), Positives = 33/47 (69%)
 Frame = +2

Query: 1155 KLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDL 1201
            K    +YGLKQA RAWY+RLS+FL+ NGF+RG  D  LFRK    +L
Sbjct: 347  KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNL 487


>TC232995 
          Length = 1009

 Score =  230 bits (587), Expect = 3e-60
 Identities = 113/173 (65%), Positives = 138/173 (79%)
 Frame = +2

Query: 1138 VSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTH 1197
            V QPPGF   +KPNHV+KL KALYGLKQAPRAWY+RLS FL+E  FSRGK+DTTLF K  
Sbjct: 2    VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181

Query: 1198 NTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFI 1257
            + D+L+VQ+YVDDIIFG+T   +C+EFS  MQSEFEMSMMGEL +FLGLQIKQ   GIFI
Sbjct: 182  HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361

Query: 1258 SQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLL 1310
            +Q KY K+++K++ M+ AK MSTPM  +  LDKDESG+SI  K+YR  IG ++
Sbjct: 362  NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520


>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
            (japonica cultivar-group)}, partial (10%)
          Length = 463

 Score =  229 bits (583), Expect = 9e-60
 Identities = 107/152 (70%), Positives = 129/152 (84%)
 Frame = -3

Query: 1029 AMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEG 1088
            AM+EEL+QFERN VW LV   ++  +IGT+WVFRNKLDE G ++RNKARLVA+GYNQ+EG
Sbjct: 458  AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279

Query: 1089 IDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKE 1148
            IDY+ET+APVARLE IR+LLAY +  + KL+QMDVKSAFLNG + EEVYV QPPGF   +
Sbjct: 278  IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99

Query: 1149 KPNHVFKLTKALYGLKQAPRAWYDRLSTFLIE 1180
            KP HV+KL KALYGLKQAPRAWY+R+S FL+E
Sbjct: 98   KPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3


>NP004897 gag-protease polyprotein
          Length = 1923

 Score =  214 bits (545), Expect = 2e-55
 Identities = 179/663 (26%), Positives = 288/663 (42%), Gaps = 33/663 (4%)
 Frame = +1

Query: 9   EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPT--NKEG----AVKA 62
           EGG  NRPP+ DG+NY +WK +M  FL+S D+  W  +      P   + EG     +K 
Sbjct: 16  EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKP 195

Query: 63  KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKET 122
           +  W+ +E    L NSKA   L   +       ++ CT AK  W+ LK  HEGTS VK +
Sbjct: 196 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMS 375

Query: 123 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRP 182
           R+ +   KFE  +M E E I + +     I N   +LG+  +    +RKILR LP  +  
Sbjct: 376 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDM 555

Query: 183 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQE 242
            VTAI +A+D+ ++ +++LIGSL+  E+ L  D+  KK + LA  ++       DE  ++
Sbjct: 556 KVTAIEEAQDICNLRVDELIGSLQTFELGLS-DRTEKKSKNLAFVSN-------DEGEED 711

Query: 243 PQELEEVHEEEAEDELALISKRIQRMMLRRNQ------------IRKKFPKTNISIKTEA 290
             +L+   +E   + + L+ K+  +++ R ++            IRK       S +  +
Sbjct: 712 EYDLDT--DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPS 885

Query: 291 DKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLMA 350
                 C+GC   GH K ECP   K QRK        +   D  ES+ + D+D D+  + 
Sbjct: 886 HSKGFQCHGCEGYGHIKAECPTHLKKQRKG-----LSVCRSDDTESEQESDSDRDVNALT 1050

Query: 351 --------QSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLI-------KEL 395
                    SD + E+   +  + Y++L  K + +L     L     +L        +E+
Sbjct: 1051GRFESAEDSSDTDSEITFDELATSYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 1230

Query: 396 SEIKEEKEILQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLK 455
           SE+K E   L +K +   K+IK+L     DM ++  ++ +       +    +    +  
Sbjct: 1231SELKGEVGFLNSKLENMTKSIKMLNKGS-DMLDEVLQLGKNVGNQRGLGFNHKSAGRITM 1407

Query: 456 KEVETLKKDLTGFIKSTETFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRVKCCF 515
            E    K   TG   S    ++    Q KS +K                     + +C +
Sbjct: 1408TEFVPAKIS-TGATMSQHRSRHHGTQQKKSKRK---------------------KWRCHY 1521

Query: 516 CDKYGHNESVCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQN 575
           C KYGH +  C+           +L     H  +S SS++           +   H    
Sbjct: 1522CGKYGHIKPFCY-----------HLHGHPHHGTQSSSSRRKMMWVPKHKIVSLVVHTSLR 1668

Query: 576 VTFRKDLLEELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGKIRGK 635
            + ++D              LDSGCSRHMTG ++  +  E      VTFG+  KGKI G 
Sbjct: 1669ASAKEDWY------------LDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGM 1812

Query: 636 GTI 638
           G +
Sbjct: 1813GKL 1821


>TC213445 
          Length = 705

 Score =  130 bits (328), Expect(2) = 1e-49
 Identities = 59/98 (60%), Positives = 76/98 (77%)
 Frame = +1

Query: 1378 KVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSL 1437
            K +R+STS +C F+G AL+ W  +KQN++ LST EAEY+SA S  +QI W+R QL DY L
Sbjct: 400  KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579

Query: 1438 RYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIR 1475
            +   +PI CDNTSAINLSKN I +SR+KHIEI+HHF+R
Sbjct: 580  KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693



 Score = 86.3 bits (212), Expect(2) = 1e-49
 Identities = 40/68 (58%), Positives = 51/68 (74%)
 Frame = +2

Query: 1305 MIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSF 1364
            MI S LYL+ SRP I+F+V +C R+Q   KESHL+ +KRI RYL+G  +LGLWY K SS+
Sbjct: 197  MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376

Query: 1365 DLVAYCDA 1372
            +LV Y DA
Sbjct: 377  NLVGYSDA 400


>BM143109 
          Length = 415

 Score =  177 bits (449), Expect = 3e-44
 Identities = 87/137 (63%), Positives = 104/137 (75%)
 Frame = +1

Query: 1140 QPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNT 1199
            QPP   N EKPNHVFKL K LYGLKQA RAWY+ LS FL++ GFS+GK+DT LF      
Sbjct: 4    QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183

Query: 1200 DLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQ 1259
            D+L+VQ+YVDDIIFG+T   +C++FS  MQ+EFEMSMM EL FFLGLQIKQ  NGIFISQ
Sbjct: 184  DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363

Query: 1260 EKYVKDILKKYKMNEAK 1276
             KY KD++ ++ M   K
Sbjct: 364  SKYCKDLIHRFGMENDK 414


>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
            (7%)
          Length = 804

 Score =  172 bits (435), Expect = 1e-42
 Identities = 95/225 (42%), Positives = 133/225 (58%), Gaps = 4/225 (1%)
 Frame = +1

Query: 1295 KSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDL 1354
            + +   E+R +IGSL YL  SRP+I FAV L +RF    + SH+ A KR+ R + GT   
Sbjct: 1    RGVDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGS 180

Query: 1355 GLWY---RKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTT 1411
            G+ +    K    DL+ Y D+D+  D  + KST G       A +  S +KQ+ IALST 
Sbjct: 181  GVLFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTC 360

Query: 1412 EAEYVSAASCCSQILWVRNQLEDYSLRYTS-VPIYCDNTSAINLSKNPIQHSRSKHIEIK 1470
            EAEYV+A+    Q +W+ N LE+  LR    V +  DN SAINL+K+P  H RSKHIE++
Sbjct: 361  EAEYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELR 540

Query: 1471 HHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKLL 1515
             H+IRD V K N+ + +   E QLAD+ TKP+   RF  +  +L+
Sbjct: 541  FHYIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSELV 675


>AI959950 
          Length = 466

 Score =  169 bits (427), Expect = 1e-41
 Identities = 83/132 (62%), Positives = 105/132 (78%)
 Frame = -1

Query: 1027 IKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQ 1086
            +KAM+EEL QF++N V  LV   + K ++G +W+F NKLDE+GKVVR KARLVA+GY+QQ
Sbjct: 397  MKAMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQ 218

Query: 1087 EGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFIN 1146
            EGIDY +TFA VARLE I ILL++A + ++KL+QMDVKSAFLNG + +EVYV QPPGF N
Sbjct: 217  EGIDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFEN 38

Query: 1147 KEKPNHVFKLTK 1158
            +    HVFKL K
Sbjct: 37   ETLHQHVFKLNK 2



 Score = 31.6 bits (70), Expect = 2.8
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -2

Query: 1007 AMISQMEPKSINEAIIDDSWIKAMKEELSQFER 1039
            A+I +M+PK I+EAI DD+  K  K+ L  F+R
Sbjct: 456  ALIFEMKPKHIDEAIKDDN**KRCKKNLISFKR 358


>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
            partial (7%)
          Length = 336

 Score =  166 bits (419), Expect = 9e-41
 Identities = 77/111 (69%), Positives = 96/111 (86%)
 Frame = +3

Query: 1013 EPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVV 1072
            EPK+I EAI+DD+WI  M+EEL+QFERN VW LV   ++  +IGT+WVFRNKLDE G ++
Sbjct: 3    EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182

Query: 1073 RNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDV 1123
            RNKARLVA+GYNQ+EGIDY+ET+APVARLEAIR+LLAYA+  + KL+QMDV
Sbjct: 183  RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335


>AI855982 
          Length = 484

 Score =  164 bits (416), Expect = 2e-40
 Identities = 85/161 (52%), Positives = 111/161 (68%), Gaps = 2/161 (1%)
 Frame = +2

Query: 983  PTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERN 1040
            P D IIG  + GV TR S +D  NNMA +S +EPK+I EAI+DD+WI AM+EEL+QFERN
Sbjct: 2    PLDNIIGDISKGVTTRHSLKDLCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQFERN 181

Query: 1041 KVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVAR 1100
             VW LV    +  +I T+WVFRNKLDE   ++ +KARLVA+GYNQ +G+DY+ T+A +AR
Sbjct: 182  NVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYASIAR 361

Query: 1101 LEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQP 1141
            L  I + L+Y    +  L+     SA L+G L  EVYV QP
Sbjct: 362  L*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484


>CO983516 
          Length = 724

 Score =  160 bits (405), Expect = 4e-39
 Identities = 77/123 (62%), Positives = 95/123 (76%)
 Frame = +2

Query: 1092 DETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPN 1151
            D+ F PVARLE+IR+LL  A     KL+QMDVKSAFLNG+LNEEVYV QP GFI+   P+
Sbjct: 356  DKEFHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPD 535

Query: 1152 HVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDI 1211
            HV++L KALYGLKQAPRAWY+RL+  L + G+ +G ID TLF K    +L+I Q+YVDDI
Sbjct: 536  HVYRLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDI 715

Query: 1212 IFG 1214
            +FG
Sbjct: 716  VFG 724


>CF920770 
          Length = 581

 Score =  146 bits (369), Expect = 6e-35
 Identities = 74/187 (39%), Positives = 111/187 (58%), Gaps = 13/187 (6%)
 Frame = -2

Query: 39  DNDMWAVITNGDFVPTNKEGAV-------------KAKSAWSTDEKAQVLLNSKARLFLS 85
           D ++W  I  G ++PT  E                K +  WS +++ +V  N KA+  ++
Sbjct: 574 DLNIWEAIEIGPYIPTTVERVSIDGSSSSESITIEKPRDRWSEEDRKRVQYNLKAKNIIT 395

Query: 86  CALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMSENETIDEM 145
            AL M+E  RV  C +AK +WDTL++ HEGT+ VK +RI+    ++E+F M+ NE I  M
Sbjct: 394 SALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVKRSRINALTHEYELFRMNTNENIQSM 215

Query: 146 YARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRPMVTAITQAKDLKSMNLEDLIGSL 205
             RFT IVN + +LGK +   D I K+LRCL   W+P VTAI++++DL +M+L  L G L
Sbjct: 214 QKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREWQPKVTAISESRDLSNMSLATLFGKL 35

Query: 206 RAHEVVL 212
           + HE+ L
Sbjct: 34  QEHEMEL 14


>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
            partial (34%)
          Length = 407

 Score =  131 bits (330), Expect = 2e-30
 Identities = 66/130 (50%), Positives = 91/130 (69%)
 Frame = -2

Query: 1046 VPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIR 1105
            VP    KT +G RWV+  K+   G+V R KARLVA+GY Q  GIDY +TF+PVA+L  +R
Sbjct: 406  VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227

Query: 1106 ILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQ 1165
            + LA AA     L Q+D+K+AFL+G L E++Y+ QPPGF+ + +   V KL ++LYGLKQ
Sbjct: 226  LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47

Query: 1166 APRAWYDRLS 1175
            +PRAW+ + S
Sbjct: 46   SPRAWFGKFS 17


>BI321712 
          Length = 399

 Score =  127 bits (318), Expect = 5e-29
 Identities = 58/124 (46%), Positives = 86/124 (68%)
 Frame = -3

Query: 1206 VYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKD 1265
            +YVDD+IF      M EEF   M +EFEM+ MG + ++LG+++KQ   GIFI+QE Y K+
Sbjct: 379  LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200

Query: 1266 ILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGL 1325
            +LKK+KM++A  + TPM   S L K E G+++    Y+ +IGSL YLT +RPDI++ VG+
Sbjct: 199  VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20

Query: 1326 CARF 1329
             +R+
Sbjct: 19   VSRY 8


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
            (30%)
          Length = 687

 Score =  126 bits (316), Expect = 8e-29
 Identities = 63/158 (39%), Positives = 98/158 (61%), Gaps = 3/158 (1%)
 Frame = +2

Query: 1360 KGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAA 1419
            KG++  L  YCDAD+AG  ++R+STSG C F+G  L+ W  +KQ  +A S+ EAEY S A
Sbjct: 2    KGNT-QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMA 178

Query: 1420 SCCSQILWVRNQLEDYSLRY---TSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRD 1476
                +++W++  L++  LR+     + +YCDN +A++++ NP+ H R+KHIEI  HFIR+
Sbjct: 179  MVTCELMWIKQFLQE--LRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIRE 352

Query: 1477 HVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
             +  K I   F+ + +Q  DI TK L   +   +  KL
Sbjct: 353  KLLSKEIVTEFIGSNDQPVDILTKSLRGPKIQIVCSKL 466


>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
          Length = 493

 Score =  120 bits (302), Expect = 3e-27
 Identities = 59/136 (43%), Positives = 89/136 (65%), Gaps = 1/136 (0%)
 Frame = +3

Query: 1380 ERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSL-R 1438
            +RKST+G   F+G     W  +KQ  + LST EAEYV+A SC    +W+RN L++  + +
Sbjct: 12   DRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMPQ 191

Query: 1439 YTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIF 1498
               + I  DN SA+ L+KNP+ H +SKHI+ ++HFIR+ ++KK + L +V +++Q ADIF
Sbjct: 192  EEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADIF 371

Query: 1499 TKPLVEDRFNFLKEKL 1514
            TKPL  + F  L+  L
Sbjct: 372  TKPLKLETFVKLRSML 419


>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
            vinifera}, partial (34%)
          Length = 409

 Score =  120 bits (300), Expect = 6e-27
 Identities = 60/128 (46%), Positives = 82/128 (63%)
 Frame = +3

Query: 1014 PKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVR 1073
            P +I EA+    W +AM +E+   E N  W LVP    KT +G RWV+  K+   GKV R
Sbjct: 21   PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200

Query: 1074 NKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLN 1133
             KARLVA+GY Q  GI+Y +TF+PV  L  +R+ LA AA +   L Q+D+K+AFL+G L 
Sbjct: 201  LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380

Query: 1134 EEVYVSQP 1141
            E++Y+ QP
Sbjct: 381  EDIYMEQP 404


>BU548243 
          Length = 599

 Score =  119 bits (298), Expect = 1e-26
 Identities = 62/149 (41%), Positives = 87/149 (57%)
 Frame = -1

Query: 1368 AYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILW 1427
            A CDA +A D  + +ST GS  FLG  LI W  RKQ   A S+TEAEY S A   +++ W
Sbjct: 596  ALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTW 417

Query: 1428 VRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSF 1487
            ++  L +  + +T   I CDN SA+ ++ N + HSR+KH+EI   F+ + V  K + +  
Sbjct: 416  IQALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFH 237

Query: 1488 VDTENQLADIFTKPLVEDRFNFLKEKLLI 1516
            +   +Q A I TKPL   RF FLK KL +
Sbjct: 236  IPALDQWAGILTKPLSSARFTFLKSKLTV 150


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,803,246
Number of Sequences: 63676
Number of extensions: 825086
Number of successful extensions: 4638
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 4440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4587
length of query: 1523
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1413
effective length of database: 5,635,272
effective search space: 7962639336
effective search space used: 7962639336
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)


Medicago: description of AC144724.6