BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144721.10 + phase: 0 /pseudo
(813 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 300 1e-81
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 300 1e-81
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 152 4e-37
CO982036 147 1e-35
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 140 3e-33
BU548243 129 7e-30
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 127 3e-29
BU549979 124 1e-28
TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON li... 82 3e-28
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 94 1e-26
TC232995 117 2e-26
AI855899 similar to GP|2244960|emb| retrotransposon like protein... 115 1e-25
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 112 5e-25
AW185460 111 1e-24
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 110 2e-24
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 110 2e-24
BE211208 109 6e-24
BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 106 5e-23
TC213445 77 6e-23
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 91 1e-22
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 300 bits (769), Expect = 1e-81
Identities = 155/372 (41%), Positives = 222/372 (59%)
Frame = +1
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D +PDHV LKK+LYGLKQAPRAWY+R FL+ G+ D +LF+ ++
Sbjct: 3598 DPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQ 3777
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
+YVDDI+ S+ + + ++SEF ++ +G L YFLG+ + +FL QS+YA++
Sbjct: 3778 IYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKN 3957
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
I+ + M N TP T KLS D +LYRS+ G+L YLT +RPDI+YAV
Sbjct: 3958 IVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGV 4137
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
Y +P+ SH +KRI++Y+ GT ++G+ + L Y DADW G D R+STS
Sbjct: 4138 CARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTS 4317
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
G C YLG+NLISW +K+Q +S S+AEAEY + ++ W++ +L E + T +
Sbjct: 4318 GGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMT-L 4494
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDN+SAI +S NPV H RTKHI++ H++R+ V + + HV T Q ADIFTK L
Sbjct: 4495 YCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDA 4674
Query: 798 PLFDEFRSSLSI 809
F++ R L I
Sbjct: 4675 NQFEKLRGKLGI 4710
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 300 bits (769), Expect = 1e-81
Identities = 156/372 (41%), Positives = 222/372 (58%)
Frame = +1
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D +PDHV LKK+LYGLKQAPRAWY+R FL+ G+ D +LF+ ++
Sbjct: 3601 DPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQ 3780
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
+YVDDI+ S+ + + ++SEF ++ +G L YFLG+ + +FL QSKYA++
Sbjct: 3781 IYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKN 3960
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
I+ + M N TP T KLS D +LYRS+ G+L YLT +RPDI+YAV
Sbjct: 3961 IVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGV 4140
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
Y +P+ SH +KRI++Y+ GT ++G+ + + L Y DADW G D R+STS
Sbjct: 4141 CARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTS 4320
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
G C YLG NLISW +K+Q +S S+AEAEY + ++ W++ +L E + T +
Sbjct: 4321 GGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMT-L 4497
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDN+SAI +S NPV H RTKHI++ H++R+ V + + HV T Q ADIFTK L
Sbjct: 4498 YCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDA 4677
Query: 798 PLFDEFRSSLSI 809
F++ R L I
Sbjct: 4678 NQFEKLRGKLGI 4713
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 152 bits (385), Expect = 4e-37
Identities = 71/143 (49%), Positives = 95/143 (65%)
Frame = +2
Query: 656 TNLSAYSDADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVA 715
T LS Y DADW GCP RRSTSGYCV++G NL+SW +K+Q ++RSSAEAEYR +A V
Sbjct: 11 TQLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTC 190
Query: 716 ESCWLRNLLLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQ 775
E W++ L EL +YCDN +A++++ NPV H+RTKHIE+D HF+REK+ +
Sbjct: 191 ELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKE 370
Query: 776 VHVLHVPTRYQYADIFTKGLPKP 798
+ + + Q DI TK L P
Sbjct: 371 IVTEFIGSNDQPVDILTKSLRGP 439
>CO982036
Length = 674
Score = 147 bits (372), Expect = 1e-35
Identities = 83/206 (40%), Positives = 120/206 (57%), Gaps = 3/206 (1%)
Frame = -2
Query: 493 TTYILLYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQS 552
T Y+L+YVD II+T SS +L + + L S F L LG L+YF+ + LF ++
Sbjct: 655 TVYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRT 479
Query: 553 KYAEDIISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDIS 612
E I R +P +P+ T KLS + + F T YRS+ GALQY T RP+IS
Sbjct: 478 SIFE-IFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEIS 302
Query: 613 YAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTN---LSAYSDADWGGC 669
+AV ++C +M +P SH+ +KRI+RY++G+ +GL L P+ + + + DADW
Sbjct: 301 FAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASA 122
Query: 670 PDTRRSTSGYCVYLGDNLISWSAKRQ 695
D +RSTSG V+LG NLISW +Q
Sbjct: 121 VDDKRSTSGAAVFLGPNLISWWXXKQ 44
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 140 bits (352), Expect = 3e-33
Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 3/221 (1%)
Frame = +1
Query: 590 DSTLYRSLAGALQYLTFTRPDISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLH 649
D T +R L G+L+YL +RP+I +AV I +M PR SH A KR++R I+GT G+
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 650 L---SPSTVTNLSAYSDADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAE 706
+ S +L Y+D+DW P+ +ST GY D ++ S+K+Q ++ S+ EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 707 YRGVANVVAESCWLRNLLLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHF 766
Y + ++ W+ NLL EL K + DN SAI L+ +P H R+KHIE+ H+
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 767 VREKVALGQVHVLHVPTRYQYADIFTKGLPKPLFDEFRSSL 807
+R++V+ G V V + Q AD+ TK + F + S L
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BU548243
Length = 599
Score = 129 bits (323), Expect = 7e-30
Identities = 65/151 (43%), Positives = 92/151 (60%)
Frame = -1
Query: 659 SAYSDADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESC 718
+A DA W D RST G ++LG NLISW +++Q ++SS EAEYR +A AE
Sbjct: 599 TALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELT 420
Query: 719 WLRNLLLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHV 778
W++ LL+EL P + V+ CDN SA+ ++ N V H RTKH+E+D+ FV EKV Q+ +
Sbjct: 419 WIQALLMELQIPFT-PPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQI 243
Query: 779 LHVPTRYQYADIFTKGLPKPLFDEFRSSLSI 809
H+P Q+A I TK L F +S L++
Sbjct: 242 FHIPALDQWAGILTKPLSSARFTFLKSKLTV 150
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
(16%)
Length = 662
Score = 127 bits (318), Expect = 3e-29
Identities = 75/186 (40%), Positives = 104/186 (55%), Gaps = 3/186 (1%)
Frame = +3
Query: 627 TSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCVYLGDN 686
T A R+++Y++G GL S + + +SDADW C D+ +S + YC +LG +
Sbjct: 3 TRPLCAATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSS 182
Query: 687 LISWSAKRQATLSR--SSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVVYCDNVSA 744
LISW AK+Q T+SR SS+EA+YR + + E WL LL +LH T++YCDN SA
Sbjct: 183 LISWKAKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLH-----VTLIYCDNQSA 347
Query: 745 IYLSGNPVNHQRTKHIEMDIHFVREKVALGQVH-VLHVPTRYQYADIFTKGLPKPLFDEF 803
L P+ +E+D H VREK G +H +L V + Q ADIFTK L LF
Sbjct: 348 --LQ*LPIKVIYHGQLEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSSN 521
Query: 804 RSSLSI 809
S L +
Sbjct: 522 LSKLGL 539
>BU549979
Length = 615
Score = 124 bits (312), Expect = 1e-28
Identities = 62/184 (33%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Frame = -1
Query: 621 YMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYC 680
Y +P H+ K+++RY+QGTK++ L + + YSD+D+ GC D+RRSTSGY
Sbjct: 603 YQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGYI 424
Query: 681 VYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHC--PISKATVVY 738
L D ++SW + +Q ++ S+ E E+ + WL++ + L IS+ +Y
Sbjct: 423 FMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKLY 244
Query: 739 CDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGL-PK 797
CDN +A++++ N + R+KHI++ +RE+V +V + HV T D TKG+ PK
Sbjct: 243 CDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTPK 64
Query: 798 PLFD 801
D
Sbjct: 63 NFKD 52
>TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON like protein,
partial (5%)
Length = 799
Score = 82.0 bits (201), Expect(3) = 3e-28
Identities = 39/97 (40%), Positives = 57/97 (58%)
Frame = +1
Query: 621 YMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYC 680
+M DP A KR++RY++GT +FGL L S +L A+ DA+W RST Y
Sbjct: 139 FMKDPTKIRMQATKRVLRYLKGTIDFGLQLRSSPDQHLRAFYDANWVDNTSDIRSTGAYV 318
Query: 681 VYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAES 717
VY G ++ISWS K+Q+ + +SS + EY + + ES
Sbjct: 319 VYFGLSVISWSCKKQSIIDKSSTKVEYHKITTTIIES 429
Score = 53.1 bits (126), Expect(3) = 3e-28
Identities = 26/59 (44%), Positives = 38/59 (64%)
Frame = +2
Query: 737 VYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGL 795
+Y N+ A+YL NPV H KH+ +D FV++ VA Q+ V HVP+ + + D+FTK L
Sbjct: 455 MYSYNIGAMYLCANPVFHLCMKHLTIDHLFVQDLVANKQLRVSHVPSCH*HVDLFTKAL 631
Score = 29.6 bits (65), Expect(3) = 3e-28
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 590 DSTLYRSLAGALQYLTFTRPDISYAVQQICLY 621
D +Y L +LQYL+ T PDI++ + ++ ++
Sbjct: 48 DGIVYCQLVDSLQYLSLTCPDIAFPINKLSVH 143
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 94.0 bits (232), Expect(2) = 1e-26
Identities = 55/182 (30%), Positives = 85/182 (46%)
Frame = +3
Query: 496 ILLYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYA 555
I +YVDDII +S + ++ F + G L + LG+ + G+F+HQ KY
Sbjct: 495 IHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEKYT 674
Query: 556 EDIISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAV 615
+ + R +M KP TP+ + + Y + +L YLT +RPDI + V
Sbjct: 675 KSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVFVV 854
Query: 616 QQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRS 675
+ P+ SH A+KRI+RY+ GT L + +L Y D + G R+S
Sbjct: 855 CLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVERKS 1034
Query: 676 TS 677
TS
Sbjct: 1035TS 1040
Score = 45.1 bits (105), Expect(2) = 1e-26
Identities = 21/44 (47%), Positives = 28/44 (62%)
Frame = +2
Query: 452 LYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTY 495
+YGLKQA RAWY+R +SFL + GF TD +LF + +Y
Sbjct: 362 VYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNLSY 493
>TC232995
Length = 1009
Score = 117 bits (293), Expect = 2e-26
Identities = 62/160 (38%), Positives = 92/160 (56%)
Frame = +2
Query: 440 NNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLY 499
+ P+HV L+K+LYGLKQAPRAWY+R ++FL F K D +LFI +D + +Y
Sbjct: 32 DKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRKHNDILLVQIY 211
Query: 500 VDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDII 559
VDDII +++ SL ++SEF ++ +G L YFLG+ + G+F++QSKY +++I
Sbjct: 212 VDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFINQSKYCKELI 391
Query: 560 SRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAG 599
R M + K TP+ T L + D YR G
Sbjct: 392 KRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIG 511
>AI855899 similar to GP|2244960|emb| retrotransposon like protein
{Arabidopsis thaliana}, partial (18%)
Length = 418
Score = 115 bits (287), Expect = 1e-25
Identities = 58/135 (42%), Positives = 84/135 (61%), Gaps = 3/135 (2%)
Frame = +1
Query: 564 MVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQICLYMH 623
M++C TP+ + KLS E ++ YR + GALQY+T TRP+I+Y V ++ +M
Sbjct: 13 MLDCNGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFMS 192
Query: 624 DPRTSHFAALKRIIRYIQGTKEFGLHLSPSTV---TNLSAYSDADWGGCPDTRRSTSGYC 680
P S+ +KRI+RY+ GT GL L P+ + +L AY+D DWG P RSTSG C
Sbjct: 193 SPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGSC 372
Query: 681 VYLGDNLISWSAKRQ 695
++ G NLI+WS+K+Q
Sbjct: 373 IFSGSNLIAWSSKKQ 417
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 112 bits (281), Expect = 5e-25
Identities = 58/139 (41%), Positives = 82/139 (58%)
Frame = -2
Query: 450 KSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYVDDIILTTSS 509
KSLYGLKQA R WY++ + L G++ S +D+SLF T G+ T +L+YVDDIIL S
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241
Query: 510 HSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISRAKMVNCKP 569
D I L F + +LG L YFLG+ G+ + Q KY D++ + ++ CKP
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61
Query: 570 ALTPVDTKSKLSATSGEKF 588
A TP+DT KL + +G +
Sbjct: 60 ASTPLDTSIKLHSAAGTPY 4
>AW185460
Length = 411
Score = 111 bits (278), Expect = 1e-24
Identities = 52/105 (49%), Positives = 70/105 (66%)
Frame = +2
Query: 607 TRPDISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADW 666
TRPDI YA + +M P HF A KRI+RY+QGTK FG+ + T + L Y+D+DW
Sbjct: 92 TRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSELLGYTDSDW 271
Query: 667 GGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVA 711
G D +STSGY LG + SW++K+QAT+++S+AEAEY VA
Sbjct: 272 AGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVA 406
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 110 bits (276), Expect = 2e-24
Identities = 51/109 (46%), Positives = 73/109 (66%)
Frame = +2
Query: 663 DADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRN 722
DA+W P R ST GYCV +G+NL+ W + + ++RSSAEAEY+ + E W++
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 723 LLLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKV 771
LL EL ++ + CDN +A++++ NPV H+RTKHIE+D HFVREKV
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 110 bits (275), Expect = 2e-24
Identities = 55/139 (39%), Positives = 85/139 (60%)
Frame = +3
Query: 671 DTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCP 730
D R+ST+G+ ++GD +W +K+Q ++ S+ EAEY + V + WLRNLL EL P
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 731 ISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADI 790
+ + DN SA+ L+ NPV H+++KHI+ HF+RE + +V + +V ++ Q ADI
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368
Query: 791 FTKGLPKPLFDEFRSSLSI 809
FTK L F + RS L +
Sbjct: 369 FTKPLKLETFVKLRSMLGV 425
>BE211208
Length = 413
Score = 109 bits (272), Expect = 6e-24
Identities = 55/128 (42%), Positives = 80/128 (61%), Gaps = 1/128 (0%)
Frame = +2
Query: 495 YILLYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRH-SGGLFLHQSK 553
Y+L+YVDDII+T S+ L +++ L S FSL LG L+YFLG+ +G + L QSK
Sbjct: 29 YLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVLLTQSK 208
Query: 554 YAEDIISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISY 613
Y D++ + M KP +P+ T +LS + D T+YRS+ GALQY T TRP+IS+
Sbjct: 209 YICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRPEISF 388
Query: 614 AVQQICLY 621
A ++C +
Sbjct: 389 AANKVCQF 412
>BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (19%)
Length = 454
Score = 106 bits (264), Expect = 5e-23
Identities = 56/126 (44%), Positives = 78/126 (61%)
Frame = -2
Query: 684 GDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVVYCDNVS 743
G+ K + +RSSA+AEYR +A V E L+ +L EL P++ +YCDN +
Sbjct: 450 GETWXXGGTKNKMXXARSSAKAEYRAMAQGVCEIL*LKRILEELQLPMTLPMKLYCDNKA 271
Query: 744 AIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPKPLFDEF 803
AI +S NPV H RTKH+E+D F++EKV GQ+ + +P Q ADIFTKGL +P F+ F
Sbjct: 270 AINISQNPVQHGRTKHVEIDRPFIKEKVDAGQICMPFIPFSQQVADIFTKGLFRPNFEFF 91
Query: 804 RSSLSI 809
S L +
Sbjct: 90 VSKLDM 73
>TC213445
Length = 705
Score = 77.4 bits (189), Expect(2) = 6e-23
Identities = 40/100 (40%), Positives = 58/100 (58%)
Frame = +1
Query: 669 CPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELH 728
C R STS C ++G L+SW +K+Q ++ S+AEAEY + A+ W+R L +
Sbjct: 397 CKTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYG 576
Query: 729 CPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVR 768
+ + CDN SAI LS N + + RTKHIE+ HF+R
Sbjct: 577 LKLDHIP-IRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 49.3 bits (116), Expect(2) = 6e-23
Identities = 24/62 (38%), Positives = 36/62 (57%)
Frame = +2
Query: 603 YLTFTRPDISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYS 662
YL+ +RP I ++V Y +P+ SH + +KRI+RY+ G GL ++ NL YS
Sbjct: 215 YLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSYNLVGYS 394
Query: 663 DA 664
DA
Sbjct: 395 DA 400
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 90.5 bits (223), Expect(2) = 1e-22
Identities = 45/93 (48%), Positives = 62/93 (66%)
Frame = +3
Query: 652 PSTVTNLSAYSDADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVA 711
P T + Y+DADW G RRSTSGYC ++G NL+S S K+Q+ ++RSSAEAE+R +A
Sbjct: 129 PWTSSGRKGYTDADWAGSVTDRRSTSGYCTFVGGNLVS*S-KKQSVVARSSAEAEFRALA 305
Query: 712 NVVAESCWLRNLLLELHCPISKATVVYCDNVSA 744
+ + E+ W++ LL EL S +YCDN SA
Sbjct: 306 HGICETLWVKKLLQELKVHSSPPIKLYCDNKSA 404
Score = 35.0 bits (79), Expect(2) = 1e-22
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 611 ISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLH 649
I++AV + +MH P H A RI+RY++G+ GL+
Sbjct: 7 IAFAVSMVSQFMHAPGHEHLEAAFRILRYLKGSPGRGLY 123
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.333 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,375,787
Number of Sequences: 63676
Number of extensions: 766995
Number of successful extensions: 6394
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 6147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6334
length of query: 813
length of database: 12,639,632
effective HSP length: 105
effective length of query: 708
effective length of database: 5,953,652
effective search space: 4215185616
effective search space used: 4215185616
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 63 (28.9 bits)
Medicago: description of AC144721.10