Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144720.4 + phase: 0 
         (83 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC203421 similar to GB|AAO63375.1|28950903|BT005311 At3g10360 {A...   120  1e-28
TC204308 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {M...   105  5e-24
TC204305 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {M...   104  7e-24
TC204306 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {M...   102  3e-23
TC204309                                                               77  2e-15
TC203289 similar to GB|AAB61025.1|2191138|IG002N01 coded for by ...    74  1e-14
TC219194 similar to UP|Q9SVZ7 (Q9SVZ7) Pumilio-like protein, par...    74  2e-14
TC209647 weakly similar to UP|Q9SVZ7 (Q9SVZ7) Pumilio-like prote...    71  8e-14
AW830951 weakly similar to GP|9293981|dbj RNA binding protein-li...    36  0.003
AW472289 similar to GP|8809626|dbj| contains similarity to RNA-b...    36  0.004
BE823345                                                               31  0.13
BM528619                                                               31  0.13
TC206771 similar to UP|Q9NYU2 (Q9NYU2) UDP-glucose:glycoprotein ...    30  0.22
CF921964                                                               29  0.48
TC203834 weakly similar to UP|Q8LLB9 (Q8LLB9) BPM, partial (26%)       28  0.82
TC222765                                                               27  1.4
BE473416                                                               25  6.9
TC229923 weakly similar to UP|Q93Z11 (Q93Z11) AT5g37360/MNJ8_150...    25  6.9
TC232258 similar to UP|Q9SBS1 (Q9SBS1) Ran GTPase activating pro...    25  6.9

>TC203421 similar to GB|AAO63375.1|28950903|BT005311 At3g10360 {Arabidopsis
           thaliana;} , partial (86%)
          Length = 1218

 Score =  120 bits (301), Expect = 1e-28
 Identities = 60/67 (89%), Positives = 62/67 (91%)
 Frame = +3

Query: 1   MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
           +QAMMKDPFGNYVVQKVLETCDD+SLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG
Sbjct: 654 LQAMMKDPFGNYVVQKVLETCDDRSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 833

Query: 61  GNECKLL 67
                LL
Sbjct: 834 ERRIGLL 854



 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 17/52 (32%), Positives = 32/52 (60%), Gaps = 1/52 (1%)
 Frame = +3

Query: 3   AMMKDPFGNYVVQKVLETCDDQSL-ELILSRIKVHLNALKRYTYGKHIVSRV 53
           A+   P+G  V+Q+VLE CDDQ+  ++I+  I   ++ L +  YG +++  +
Sbjct: 315 ALSTHPYGCRVIQRVLEHCDDQNTQQIIMEEIMQSVSTLAQDQYGNYVIQHI 470



 Score = 34.3 bits (77), Expect = 0.011
 Identities = 15/49 (30%), Positives = 27/49 (54%)
 Frame = +3

Query: 5   MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
           ++D  GN+V+QK +E      ++ I+S     + AL  + YG  ++ RV
Sbjct: 213 VRDQNGNHVIQKCIECVPQDKIQFIVSSFYGQVVALSTHPYGCRVIQRV 359



 Score = 30.8 bits (68), Expect = 0.13
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 7  DPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLI 57
          D FGNYV+QK  E   +   + + +++  H+  L    YG  ++ +  +++
Sbjct: 3  DVFGNYVIQKFFEHGTESQRKELANQLTGHVLPLSLQMYGCRVIQKALEVV 155



 Score = 28.5 bits (62), Expect = 0.63
 Identities = 13/63 (20%), Positives = 31/63 (48%)
 Frame = +3

Query: 1   MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
           +  + +D +GNYV+Q ++E         I+S++   +  + +  +  ++   +EK +  G
Sbjct: 420 VSTLAQDQYGNYVIQHIVEHGKPHERTTIISKLAGQIVKMSQQKFASNV---IEKCLAFG 590

Query: 61  GNE 63
             E
Sbjct: 591 SPE 599


>TC204308 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {Mus
           musculus;} , partial (15%)
          Length = 1311

 Score =  105 bits (261), Expect = 5e-24
 Identities = 50/60 (83%), Positives = 54/60 (89%)
 Frame = +2

Query: 1   MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
           +QAMMKD F NYVVQKVLETCDDQ  ELILSRIKVHLNALK+YTYGKHIV+RVEKL+  G
Sbjct: 608 LQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAG 787



 Score = 32.7 bits (73), Expect = 0.033
 Identities = 14/49 (28%), Positives = 27/49 (54%)
 Frame = +2

Query: 5   MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
           ++D  GN+V+QK +E   + ++  I+S     +  L  + YG  ++ RV
Sbjct: 167 VRDQNGNHVIQKCIECVPEDAINFIVSTFFDQVVTLSTHPYGCRVIQRV 313



 Score = 31.2 bits (69), Expect = 0.097
 Identities = 17/58 (29%), Positives = 29/58 (49%)
 Frame = +2

Query: 4   MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGG 61
           + +D +GNYVVQ VLE         I+  +   +  + +  +  ++   VEK +T GG
Sbjct: 383 LAQDQYGNYVVQHVLEHGKPHERSAIIKELAGKIVQMSQQKFASNV---VEKCLTFGG 547



 Score = 30.0 bits (66), Expect = 0.22
 Identities = 15/47 (31%), Positives = 27/47 (56%), Gaps = 1/47 (2%)
 Frame = +2

Query: 8   PFGNYVVQKVLETC-DDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
           P+G  V+Q+VLE C D  + + ++  I   ++ L +  YG ++V  V
Sbjct: 284 PYGCRVIQRVLEHCKDPNTQQKVMDEILGAVSMLAQDQYGNYVVQHV 424


>TC204305 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {Mus
           musculus;} , partial (15%)
          Length = 1359

 Score =  104 bits (260), Expect = 7e-24
 Identities = 50/60 (83%), Positives = 54/60 (89%)
 Frame = +3

Query: 1   MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
           +QAMMKD F NYVVQKVLETCDDQ  ELILSRIKVHLNALK+YTYGKHIV+RVEKL+  G
Sbjct: 693 LQAMMKDQFANYVVQKVLETCDDQHRELILSRIKVHLNALKKYTYGKHIVTRVEKLVAAG 872



 Score = 33.5 bits (75), Expect = 0.020
 Identities = 14/49 (28%), Positives = 28/49 (56%)
 Frame = +3

Query: 5   MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
           ++D  GN+V+QK +E   + +++ I+S     +  L  + YG  ++ RV
Sbjct: 252 VRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRV 398



 Score = 33.1 bits (74), Expect = 0.025
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
 Frame = +3

Query: 3   AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIV----------SR 52
           A+M D FGNYVVQK  E         + +++  H+  L    YG  ++           +
Sbjct: 30  ALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQK 209

Query: 53  VEKLITTGGNECKLLRYMNSHLLSLNC 79
           +E +    GN  + +R  N + +   C
Sbjct: 210 IEMVQELDGNVMRCVRDQNGNHVIQKC 290



 Score = 31.2 bits (69), Expect = 0.097
 Identities = 15/47 (31%), Positives = 28/47 (58%), Gaps = 1/47 (2%)
 Frame = +3

Query: 8   PFGNYVVQKVLETCDDQSL-ELILSRIKVHLNALKRYTYGKHIVSRV 53
           P+G  V+Q+VLE C+D +  + ++  I   ++ L +  YG ++V  V
Sbjct: 369 PYGCRVIQRVLEHCEDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHV 509



 Score = 30.8 bits (68), Expect = 0.13
 Identities = 17/58 (29%), Positives = 29/58 (49%)
 Frame = +3

Query: 4   MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGG 61
           + +D +GNYVVQ VLE         I+  +   +  + +  +  ++   VEK +T GG
Sbjct: 468 LAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNV---VEKCLTFGG 632


>TC204306 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {Mus
           musculus;} , partial (3%)
          Length = 689

 Score =  102 bits (255), Expect = 3e-23
 Identities = 49/60 (81%), Positives = 53/60 (87%)
 Frame = +2

Query: 1   MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
           +QAMMKD F NYVVQKVLETCDDQ  ELIL RIKVHLNALK+YTYGKHIV+RVEKL+  G
Sbjct: 80  LQAMMKDQFANYVVQKVLETCDDQQRELILYRIKVHLNALKKYTYGKHIVARVEKLVAAG 259


>TC204309 
          Length = 634

 Score = 77.0 bits (188), Expect = 2e-15
 Identities = 36/42 (85%), Positives = 38/42 (89%)
 Frame = +1

Query: 19 ETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
          ETCDDQ  ELILSRIKVHLNALK+YTYGKHIVSRVEKL+  G
Sbjct: 1  ETCDDQQRELILSRIKVHLNALKKYTYGKHIVSRVEKLVAAG 126


>TC203289 similar to GB|AAB61025.1|2191138|IG002N01 coded for by A. thaliana
           cDNA T46771; coded for by A. thaliana cDNA N97218; coded
           for by A. thaliana cDNA T41776; coded for by A. thaliana
           cDNA T42436; coded for by A. thaliana cDNA H37214; coded
           for by A. thaliana cDNA AA042240; coded for by A.
           thaliana cDNA T21099; coded for by A. thaliana cDNA
           T21088; coded for by A. thaliana cDNA R65156; coded for
           by A. thaliana cDNA H36209; coded for by A. thaliana
           cDNA T20742 {Arabidopsis thaliana;} , partial (65%)
          Length = 1399

 Score = 73.9 bits (180), Expect = 1e-14
 Identities = 38/44 (86%), Positives = 39/44 (88%)
 Frame = -3

Query: 24  QSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNECKLL 67
           +SLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG     LL
Sbjct: 533 RSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGERRIGLL 402


>TC219194 similar to UP|Q9SVZ7 (Q9SVZ7) Pumilio-like protein, partial (38%)
          Length = 1941

 Score = 73.6 bits (179), Expect = 2e-14
 Identities = 32/54 (59%), Positives = 42/54 (77%)
 Frame = +1

Query: 4    MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLI 57
            MMKD F NYV+QKV E C +     +LSRI++H +ALK+YTYGKHIV+R E+L+
Sbjct: 1426 MMKDQFANYVIQKVFEICSENQRATLLSRIRLHAHALKKYTYGKHIVARFEQLL 1587



 Score = 36.2 bits (82), Expect = 0.003
 Identities = 14/49 (28%), Positives = 30/49 (60%)
 Frame = +1

Query: 5    MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
            ++D  GN+V+QK +E+   ++++ I+S  +  +  L  + YG  ++ RV
Sbjct: 976  VRDQNGNHVIQKCIESIPTKNIDFIISAFRGQIALLSMHPYGCRVIQRV 1122



 Score = 33.9 bits (76), Expect = 0.015
 Identities = 14/49 (28%), Positives = 27/49 (54%)
 Frame = +1

Query: 4    MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSR 52
            + +D +GNYV Q VLE    Q    I+ ++  H+  L ++ +  ++V +
Sbjct: 1192 LAQDQYGNYVTQHVLERGKPQERSQIIHKLSGHIFQLSQHKFASNVVEK 1338



 Score = 31.6 bits (70), Expect = 0.074
 Identities = 15/54 (27%), Positives = 27/54 (49%)
 Frame = +1

Query: 4   MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLI 57
           +M D FGNYV+QK  E    +  + + +R+   +  L    YG  ++ +  + I
Sbjct: 757 LMTDVFGNYVIQKFFEYGSPEQRKELANRLLGQIPPLSLQMYGCRVIQKALEAI 918


>TC209647 weakly similar to UP|Q9SVZ7 (Q9SVZ7) Pumilio-like protein, partial
           (20%)
          Length = 684

 Score = 71.2 bits (173), Expect = 8e-14
 Identities = 29/51 (56%), Positives = 41/51 (79%)
 Frame = +1

Query: 4   MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVE 54
           MMKD F NYVVQKV++ C +    ++LS +++H +ALK+YTYGKHIV+R+E
Sbjct: 364 MMKDQFANYVVQKVIDICSENQRAMLLSHVRIHAHALKKYTYGKHIVARLE 516



 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +1

Query: 3   AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSR 52
           A+ +D +GNYV Q VLE    Q    ILS++  H+  L ++ +  ++V +
Sbjct: 127 ALAQDQYGNYVTQHVLERGKPQERSQILSKLSGHIVQLSQHKFASNVVEK 276



 Score = 33.1 bits (74), Expect = 0.025
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 8   PFGNYVVQKVLETCDDQS-LELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNECKL 66
           P+G  V+Q+VLE C D+S  + I+  I   + AL +  YG ++   V +         ++
Sbjct: 31  PYGCRVIQRVLEHCTDESQCQFIVDEILESVCALAQDQYGNYVTQHVLER-GKPQERSQI 207

Query: 67  LRYMNSHLLSLNCSDFS 83
           L  ++ H++ L+   F+
Sbjct: 208 LSKLSGHIVQLSQHKFA 258


>AW830951 weakly similar to GP|9293981|dbj RNA binding protein-like
           {Arabidopsis thaliana}, partial (12%)
          Length = 358

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 15/49 (30%), Positives = 30/49 (60%)
 Frame = +2

Query: 5   MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
           ++D  GN+V+QK +E+   ++++ ILS  +  +  L  + YG  ++ RV
Sbjct: 107 VRDQNGNHVIQKCIESIPTKNIDFILSAFRGQIALLSMHPYG*RVIHRV 253


>AW472289 similar to GP|8809626|dbj| contains similarity to RNA-binding
           protein~gene_id:MKN22.2 {Arabidopsis thaliana}, partial
           (12%)
          Length = 435

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 14/28 (50%), Positives = 24/28 (85%), Gaps = 1/28 (3%)
 Frame = +3

Query: 4   MMKDPFGNYVVQKVLETCDD-QSLELIL 30
           +M +PFGNY++QK+L+ CD+ Q +++IL
Sbjct: 348 LMMNPFGNYLMQKLLDVCDEKQRMQIIL 431


>BE823345 
          Length = 588

 Score = 30.8 bits (68), Expect = 0.13
 Identities = 14/51 (27%), Positives = 25/51 (48%)
 Frame = -3

Query: 2   QAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSR 52
           + +++DP  NYV+Q  L   +     L++  I+ H    +   Y K I S+
Sbjct: 319 EQLLQDPHANYVIQSALRHSEGHVHNLLVEAIESHKAISRNSPYSKKIFSQ 167



 Score = 26.6 bits (57), Expect = 2.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 6   KDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSR 52
           +D FGNYVVQ  L+     +   +  + +     L    +G H+V +
Sbjct: 529 QDQFGNYVVQXXLDLRIPSATATLSLQFERKYVXLSMQKFGSHVVEK 389


>BM528619 
          Length = 426

 Score = 30.8 bits (68), Expect = 0.13
 Identities = 15/48 (31%), Positives = 24/48 (49%)
 Frame = +1

Query: 4   MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVS 51
           +++DP  NYVVQ  L   + +   L++  I+ H    +   Y K I S
Sbjct: 283 LLQDPHANYVVQSALRHSEGRLHNLLVEAIESHKAISRNSPYSKKIFS 426



 Score = 26.9 bits (58), Expect = 1.8
 Identities = 14/49 (28%), Positives = 25/49 (50%)
 Frame = +1

Query: 4   MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSR 52
           + +D FGNYVVQ +L+     +   I  + + +   L R  +G  +V +
Sbjct: 61  LAQDQFGNYVVQFILDLKIPSATACIRLQFEGNYAHLSRQKFGSLVVEK 207


>TC206771 similar to UP|Q9NYU2 (Q9NYU2) UDP-glucose:glycoprotein
           glucosyltransferase 1 precursor, partial (7%)
          Length = 885

 Score = 30.0 bits (66), Expect = 0.22
 Identities = 16/53 (30%), Positives = 25/53 (46%)
 Frame = +1

Query: 31  SRIKVHLNALKRYTYGKHIVSRVEKLITTGGNECKLLRYMNSHLLSLNCSDFS 83
           S +  HLN+L  YT  + +      ++   G EC +L   N  ++ L C  FS
Sbjct: 727 SNLSGHLNSLMLYTSNQPLTFFFRTIV*YNGEECWIL*MSNITVIVLTCYKFS 885


>CF921964 
          Length = 836

 Score = 28.9 bits (63), Expect = 0.48
 Identities = 14/47 (29%), Positives = 26/47 (54%)
 Frame = -1

Query: 15  QKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGG 61
           Q VL+ CD  +  L   R+ +HL+AL ++     ++  V  +++ GG
Sbjct: 179 QSVLQVCDQAARFLAFRRVLMHLHALCQWLELFFLLPPVHTVLSNGG 39


>TC203834 weakly similar to UP|Q8LLB9 (Q8LLB9) BPM, partial (26%)
          Length = 974

 Score = 28.1 bits (61), Expect = 0.82
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   QAMMKDPFGNYVVQKVLE 19
           +A+M D FGNYV+QK  E
Sbjct: 452 RALMTDVFGNYVIQKFFE 505



 Score = 26.2 bits (56), Expect = 3.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 5   MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSR 52
           ++D  GN+V+QK +E      ++ I+S        L  + YG   + R
Sbjct: 678 VRDQNGNHVIQKSIECRPQDKIQFIVSSFNGQDALLSTHPYGCRDIHR 821


>TC222765 
          Length = 959

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 27 ELILSRIKVHLNALKR-YTYGKHIVSRVEK 55
          +L +S+ K+ +  L+R Y YGKHI+ ++ K
Sbjct: 69 DLCISKDKLWVKVLRRKYDYGKHIIPQMNK 158


>BE473416 
          Length = 476

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 13/29 (44%), Positives = 19/29 (64%)
 Frame = -2

Query: 28  LILSRIKVHLNALKRYTYGKHIVSRVEKL 56
           L+ SRI+   N ++RY +GK  VS+  KL
Sbjct: 349 LLKSRIETRFN-IQRYNWGKSWVSQCHKL 266


>TC229923 weakly similar to UP|Q93Z11 (Q93Z11) AT5g37360/MNJ8_150, partial
           (39%)
          Length = 707

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 49  IVSRVEKLITTGGNECKLLRYMNSHLLSLNCS 80
           +V+ V+   T   N C LL+Y+  H++   C+
Sbjct: 464 LVNGVDARSTFVSNNCILLKYLTHHMVVKQCT 559


>TC232258 similar to UP|Q9SBS1 (Q9SBS1) Ran GTPase activating protein,
           partial (48%)
          Length = 985

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 20  TCDDQSLELILSRIKVHLNALKRYT 44
           TC  + LEL+  ++ +HL  L+RYT
Sbjct: 189 TCLVKKLELL*VKLYLHLQILQRYT 263


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,855,332
Number of Sequences: 63676
Number of extensions: 44561
Number of successful extensions: 243
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of query: 83
length of database: 12,639,632
effective HSP length: 59
effective length of query: 24
effective length of database: 8,882,748
effective search space: 213185952
effective search space used: 213185952
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)


Medicago: description of AC144720.4