BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144720.3 + phase: 0 /pseudo
(949 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203421 similar to GB|AAO63375.1|28950903|BT005311 At3g10360 {A... 251 1e-66
TC203834 weakly similar to UP|Q8LLB9 (Q8LLB9) BPM, partial (26%) 240 2e-63
TC219194 similar to UP|Q9SVZ7 (Q9SVZ7) Pumilio-like protein, par... 118 2e-62
TC204305 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {M... 226 5e-59
TC204308 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {M... 173 4e-43
TC209647 weakly similar to UP|Q9SVZ7 (Q9SVZ7) Pumilio-like prote... 118 1e-26
BU762090 67 2e-13
BM528794 71 3e-12
BM528619 64 3e-10
BE823345 61 3e-09
AW830951 weakly similar to GP|9293981|dbj RNA binding protein-li... 45 7e-09
TC204306 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {M... 50 5e-06
TC233558 44 3e-04
AW472289 similar to GP|8809626|dbj| contains similarity to RNA-b... 40 0.006
TC225215 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, c... 35 0.12
TC225751 similar to UP|CRT3_ARATH (O04153) Calreticulin 3 precur... 33 0.45
TC212112 weakly similar to UP|Q9M6S0 (Q9M6S0) Pumilio domain-con... 32 1.0
TC226511 similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, complete 31 2.9
TC205237 similar to UP|Q9SC83 (Q9SC83) VAP27, partial (58%) 30 3.8
TC205104 weakly similar to UP|Q6ZFI7 (Q6ZFI7) Calcium-binding EF... 30 5.0
>TC203421 similar to GB|AAO63375.1|28950903|BT005311 At3g10360 {Arabidopsis
thaliana;} , partial (86%)
Length = 1218
Score = 251 bits (640), Expect = 1e-66
Identities = 147/227 (64%), Positives = 164/227 (71%), Gaps = 5/227 (2%)
Frame = +3
Query: 719 DVFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C 778
DVFGNYVIQKFFEHGT+SQRKELANQLTGHVLPLSLQMYGCRVIQK L + G
Sbjct: 3 DVFGNYVIQKFFEHGTESQRKELANQLTGHVLPLSLQMYGCRVIQKALEVVDVDQQGQMV 182
Query: 779 *SAEPNG-----VRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFY 833
+E NG VR Q N+ + + C V + S ++ + S +
Sbjct: 183 --SELNGAIMKCVRDQNGNHVI------QKCIECVPQDKIQFIVSSFYGQVVALSTHPYG 338
Query: 834 SSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKL 893
+ + CDD TQ+IIMEEIMQSV TLAQDQYGNYVIQHI+EHGKP+ERT +ISKL
Sbjct: 339 CRVIQRVLEHCDDQNTQQIIMEEIMQSVSTLAQDQYGNYVIQHIVEHGKPHERTTIISKL 518
Query: 894 AGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLGTSDENEPLQ 940
AGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLGTSDENEPLQ
Sbjct: 519 AGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLGTSDENEPLQ 659
Score = 50.4 bits (119), Expect = 4e-06
Identities = 28/83 (33%), Positives = 42/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 685 YSSGFIQQKLETASVEEKTKIF-PEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELAN 743
Y IQ+ LE + +I EI+ L D +GNYVIQ EHG +R + +
Sbjct: 333 YGCRVIQRVLEHCDDQNTQQIIMEEIMQSVSTLAQDQYGNYVIQHIVEHGKPHERTTIIS 512
Query: 744 QLTGHVLPLSLQMYGCRVIQKLL 766
+L G ++ +S Q + VI+K L
Sbjct: 513 KLAGQIVKMSQQKFASNVIEKCL 581
Score = 41.6 bits (96), Expect = 0.002
Identities = 26/94 (27%), Positives = 48/94 (50%), Gaps = 6/94 (6%)
Frame = +3
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ L S EE+ + E+L + +A+M D FGNYV+QK E D
Sbjct: 552 FASNVIEKCLAFGSPEERQILVNEMLGTSDENEPLQAMMKDPFGNYVVQKVLETCDDRSL 731
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKLLLNLLTG 772
+ + +++ H+ L YG ++ ++ + TG
Sbjct: 732 ELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 833
Score = 32.7 bits (73), Expect = 0.78
Identities = 21/92 (22%), Positives = 42/92 (44%), Gaps = 10/92 (10%)
Frame = +3
Query: 864 LAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQ 923
+ +D +GNYV+Q +LE +++S++ + + + + +++ + + ER+
Sbjct: 663 MMKDPFGNYVVQKVLETCDDRSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGERR 842
Query: 924 I----------LVNEMLGTSDENEPLQVCPPF 945
I NE LG D+ L CP F
Sbjct: 843 IGLLA*FVHPQASNEGLG--DK*SVLSYCPNF 932
>TC203834 weakly similar to UP|Q8LLB9 (Q8LLB9) BPM, partial (26%)
Length = 974
Score = 240 bits (612), Expect = 2e-63
Identities = 171/340 (50%), Positives = 202/340 (59%), Gaps = 19/340 (5%)
Frame = +3
Query: 570 LVNKSNSMNFHFLANLGFLIKGYLGVSHMVLECHIQESRYQIPHFLLLDLEIHCLRMNKS 629
L+NKSNSMN+HF ANLG L+ G +GVSHMVL CHI ESR QIPHFLLLDLEIH LRMN
Sbjct: 3 LLNKSNSMNYHF*ANLG*LM-GSMGVSHMVLACHILESRLQIPHFLLLDLEIHSLRMNVF 179
Query: 630 HT*IL**EVLWEGLAAHGMLILAITWRVDLLHPCSMSSRTTKPNLLNFQISLIMWYSSGF 689
H *I **EV WE L AHGMLI AI R DLLHP SSRT +P LLNFQISLIMW++S
Sbjct: 180 HA*IP**EVQWEVLVAHGMLIFAII*REDLLHPY*TSSRTRRPGLLNFQISLIMWFNSVL 359
Query: 690 IQQKLETAS---VEEKTKIFPEILPHARALMTD---VFGNYVIQKFFEH-GTDSQRKELA 742
I S + + K P + ++ +F ++ K F GTDSQRKELA
Sbjct: 360 ISMVAALFSRN*KQHQ*KRRPRYFLRSFLMLVP**LMFLEIMLYKNFSSIGTDSQRKELA 539
Query: 743 NQLTGHVLPLSLQMYGCRVIQKLLL--------NLLTGLGGG*C*SAEPNGVRAQWCNNE 794
+QLTGHVLPLSLQMYGCRVIQK L L++ L G A VR Q N+
Sbjct: 540 SQLTGHVLPLSLQMYGCRVIQKALEVDDADQHGQLVSELNG-----AIMKCVRDQNGNHV 704
Query: 795 MCT*PKWKPCYSEVYRVCPSE*NS----VYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQ 850
+ + +P + + S N + H + C + L CDDL TQ
Sbjct: 705 IQKSIECRP--QDKIQFIVSSFNGQDALLSTHPY---GCRDIHRGL-----EHCDDLYTQ 854
Query: 851 EIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVI 890
+IM+EIMQSV TLAQDQ NYVI I+EH ERT +I
Sbjct: 855 HMIMDEIMQSVGTLAQDQL*NYVIHAIVEHC*HFERTDII 974
Score = 33.9 bits (76), Expect = 0.35
Identities = 22/100 (22%), Positives = 48/100 (48%)
Frame = +3
Query: 832 FYSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVIS 891
F + +++S ++ + ++ V L+ YG VIQ LE ++ ++S
Sbjct: 471 FLEIMLYKNFSSIGTDSQRKELASQLTGHVLPLSLQMYGCRVIQKALEVDDADQHGQLVS 650
Query: 892 KLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLG 931
+L G I+K + + ++VI+K + ++ Q +V+ G
Sbjct: 651 ELNGAIMKCVRDQNGNHVIQKSIECRPQDKIQFIVSSFNG 770
Score = 32.7 bits (73), Expect = 0.78
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +3
Query: 833 YSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISK 892
Y +Q + DD ++ E+ ++ +DQ GN+VIQ +E ++ ++S
Sbjct: 582 YGCRVIQKALEVDDADQHGQLVSELNGAIMKCVRDQNGNHVIQKSIECRPQDKIQFIVSS 761
Query: 893 LAGQIVKMSQQKFASNVIEKCL 914
GQ +S + I + L
Sbjct: 762 FNGQDALLSTHPYGCRDIHRGL 827
>TC219194 similar to UP|Q9SVZ7 (Q9SVZ7) Pumilio-like protein, partial (38%)
Length = 1941
Score = 118 bits (295), Expect(3) = 2e-62
Identities = 57/82 (69%), Positives = 66/82 (79%)
Frame = +1
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
+ S FIQQKLE+ V+EK +F E+LPH LMTDVFGNYVIQKFFE+G+ QRKELAN+
Sbjct: 664 HGSCFIQQKLESCCVKEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANR 843
Query: 745 LTGHVLPLSLQMYGCRVIQKLL 766
L G + PLSLQMYGCRVIQK L
Sbjct: 844 LLGQIPPLSLQMYGCRVIQKAL 909
Score = 110 bits (276), Expect(3) = 2e-62
Identities = 50/89 (56%), Positives = 70/89 (78%)
Frame = +1
Query: 851 EIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVI 910
+ I++EI++SV TLAQDQYGNYV QH+LE GKP ER+ +I KL+G I ++SQ KFASNV+
Sbjct: 1153 QFIVDEILESVFTLAQDQYGNYVTQHVLERGKPQERSQIIHKLSGHIFQLSQHKFASNVV 1332
Query: 911 EKCLAFGSPEERQILVNEMLGTSDENEPL 939
EKCL +G +RQ+L+ E++G +N+ L
Sbjct: 1333 EKCLEYGDATDRQLLIAEIVGHDKQNDNL 1419
Score = 64.7 bits (156), Expect = 2e-10
Identities = 33/103 (32%), Positives = 57/103 (55%)
Frame = +1
Query: 829 CCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTI 888
C + S ++Q + +K +E++ +E++ L D +GNYVIQ E+G P +R
Sbjct: 652 CTAQHGSCFIQQKLESCCVKEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKE 831
Query: 889 VISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLG 931
+ ++L GQI +S Q + VI+K L E++ LV+E+ G
Sbjct: 832 LANRLLGQIPPLSLQMYGCRVIQKALEAIDLEQKAQLVHELDG 960
Score = 61.6 bits (148), Expect = 2e-09
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 6/254 (2%)
Frame = +1
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ LE +E+K ++ E+ + + D GN+VIQK E +
Sbjct: 871 LQMYGCRVIQKALEAIDLEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFI 1050
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G + LS+ YGCRVIQ++L N V+ Q+ +E
Sbjct: 1051 ISAFRGQIALLSMHPYGCRVIQRVL-------------EHSSNEVQCQFIVDE------- 1170
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ VF A Y + Q + + + I+ ++ +
Sbjct: 1171 -----------------ILESVFTLAQ--DQYGNYVTQHVLERGKPQERSQIIHKLSGHI 1293
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
L+Q ++ + V++ LE+G +R ++I+++ G ++ M + +FA+ VI+K
Sbjct: 1294 FQLSQHKFASNVVEKCLEYGDATDRQLLIAEIVGHDKQNDNLLTMMKDQFANYVIQKVFE 1473
Query: 916 FGSPEERQILVNEM 929
S +R L++ +
Sbjct: 1474 ICSENQRATLLSRI 1515
Score = 52.4 bits (124), Expect = 9e-07
Identities = 32/92 (34%), Positives = 50/92 (53%), Gaps = 3/92 (3%)
Frame = +1
Query: 678 QISLIMWYSSG--FIQQKLETASVEEKTK-IFPEILPHARALMTDVFGNYVIQKFFEHGT 734
QI+L+ + G IQ+ LE +S E + + I EIL L D +GNYV Q E G
Sbjct: 1069 QIALLSMHPYGCRVIQRVLEHSSNEVQCQFIVDEILESVFTLAQDQYGNYVTQHVLERGK 1248
Query: 735 DSQRKELANQLTGHVLPLSLQMYGCRVIQKLL 766
+R ++ ++L+GH+ LS + V++K L
Sbjct: 1249 PQERSQIIHKLSGHIFQLSQHKFASNVVEKCL 1344
Score = 50.8 bits (120), Expect(3) = 2e-62
Identities = 20/56 (35%), Positives = 38/56 (67%)
Frame = +3
Query: 788 AQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSD 843
A+W EMCT*PKW+ C +EV+ + + + +Y+ W++C + Y+S+W+ S+++
Sbjct: 951 ARWKCYEMCT*PKWESCNTEVH*IYSN*KH*LYNICISWSNCSSIYASIWLPSHTE 1118
Score = 45.8 bits (107), Expect = 9e-05
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +1
Query: 833 YSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISK 892
Y +Q + DL+ + ++ E+ +V +DQ GN+VIQ +E +IS
Sbjct: 880 YGCRVIQKALEAIDLEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISA 1059
Query: 893 LAGQIVKMSQQKFASNVIEKCLAFGSPE-ERQILVNEML 930
GQI +S + VI++ L S E + Q +V+E+L
Sbjct: 1060FRGQIALLSMHPYGCRVIQRVLEHSSNEVQCQFIVDEIL 1176
Score = 44.3 bits (103), Expect = 3e-04
Identities = 24/86 (27%), Positives = 44/86 (50%), Gaps = 6/86 (6%)
Frame = +1
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHAR------ALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ LE ++ + EI+ H + +M D F NYVIQK FE +++QR
Sbjct: 1315 FASNVVEKCLEYGDATDRQLLIAEIVGHDKQNDNLLTMMKDQFANYVIQKVFEICSENQR 1494
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQK 764
L +++ H L YG ++ +
Sbjct: 1495 ATLLSRIRLHAHALKKYTYGKHIVAR 1572
Score = 31.6 bits (70), Expect = 1.7
Identities = 15/77 (19%), Positives = 40/77 (51%)
Frame = +1
Query: 838 VQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQI 897
+Q + + + ++ + ++ + L+ YG VIQ LE ++ ++ +L G +
Sbjct: 787 IQKFFEYGSPEQRKELANRLLGQIPPLSLQMYGCRVIQKALEAIDLEQKAQLVHELDGNV 966
Query: 898 VKMSQQKFASNVIEKCL 914
++ + + ++VI+KC+
Sbjct: 967 MRCVRDQNGNHVIQKCI 1017
Score = 31.6 bits (70), Expect = 1.7
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 44 RGYDIY--RSGSAPPTVEGSLSAFGSLRNFDYRANNSGRSNNNDGVLTEDEIRSHPAYLS 101
RG D+ SGSAPP++EGS A SL + + N S S N D + +D+ YLS
Sbjct: 336 RGKDVVPNSSGSAPPSMEGSFLAIESLLSQNTTWNASLGSLNRD--MQKDDSGKGSLYLS 509
>TC204305 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {Mus
musculus;} , partial (15%)
Length = 1359
Score = 226 bits (575), Expect = 5e-59
Identities = 126/241 (52%), Positives = 160/241 (66%), Gaps = 8/241 (3%)
Frame = +3
Query: 708 EILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKLL- 766
EI+PH+ ALMTDVFGNYV+QKFFEHG SQR+ELAN+L GHVL LSLQMYGCRVIQK +
Sbjct: 9 EIMPHSLALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIE 188
Query: 767 -------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSV 819
+ ++ L G VR Q N+ + + C V S
Sbjct: 189 VVDLDQKIEMVQELDGN-----VMRCVRDQNGNHVI------QKCIECVPEDAIDFIVST 335
Query: 820 YHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILE 879
+ + S + + + C+D TQ+ +M+EI+ +V LAQDQYGNYV+QH+LE
Sbjct: 336 FFDQVVTLSTHPYGCRVIQRVLEHCEDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLE 515
Query: 880 HGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLGTSDENEPL 939
HGKP+ER+ +I +LAG+IV+MSQQKFASNV+EKCL FG P ERQ+LVNEMLGT+DENEPL
Sbjct: 516 HGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGTTDENEPL 695
Query: 940 Q 940
Q
Sbjct: 696 Q 698
Score = 56.6 bits (135), Expect = 5e-08
Identities = 55/276 (19%), Positives = 114/276 (40%), Gaps = 7/276 (2%)
Frame = +3
Query: 661 HPCSMSSRTTKPNLLNFQISL-IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTD 719
H + R LL ++L + Y IQ+ +E +++K ++ E+ + + D
Sbjct: 81 HGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRD 260
Query: 720 VFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C* 779
GN+VIQK E + + + V+ LS YGCRVIQ++L
Sbjct: 261 QNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVL------------- 401
Query: 780 SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQ 839
E C P + + + V + A Y + VQ
Sbjct: 402 --------------EHCEDPTTQQKVMD----------EILGAVSMLAQ--DQYGNYVVQ 503
Query: 840 SYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG---- 895
+ + I++E+ + ++Q ++ + V++ L G P+ER ++++++ G
Sbjct: 504 HVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGTTDE 683
Query: 896 --QIVKMSQQKFASNVIEKCLAFGSPEERQILVNEM 929
+ M + +FA+ V++K L + R+++++ +
Sbjct: 684 NEPLQAMMKDQFANYVVQKVLETCDDQHRELILSRI 791
Score = 50.4 bits (119), Expect = 4e-06
Identities = 27/83 (32%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 685 YSSGFIQQKLETAS-VEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELAN 743
Y IQ+ LE + K+ EIL L D +GNYV+Q EHG +R +
Sbjct: 372 YGCRVIQRVLEHCEDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIK 551
Query: 744 QLTGHVLPLSLQMYGCRVIQKLL 766
+L G ++ +S Q + V++K L
Sbjct: 552 ELAGKIVQMSQQKFASNVVEKCL 620
Score = 36.6 bits (83), Expect = 0.054
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +3
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L E+ + E+L +A+M D F NYV+QK E D R
Sbjct: 591 FASNVVEKCLTFGGPSERQLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQHR 770
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + +++ H+ L YG ++ ++
Sbjct: 771 ELILSRIKVHLNALKKYTYGKHIVTRV 851
Score = 33.5 bits (75), Expect = 0.45
Identities = 13/61 (21%), Positives = 33/61 (53%)
Frame = +3
Query: 864 LAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQ 923
+ +DQ+ NYV+Q +LE R +++S++ + + + + +++ + + ER+
Sbjct: 702 MMKDQFANYVVQKVLETCDDQHRELILSRIKVHLNALKKYTYGKHIVTRVEKLVAAGERR 881
Query: 924 I 924
I
Sbjct: 882 I 884
>TC204308 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {Mus
musculus;} , partial (15%)
Length = 1311
Score = 173 bits (438), Expect = 4e-43
Identities = 102/213 (47%), Positives = 134/213 (62%), Gaps = 8/213 (3%)
Frame = +2
Query: 736 SQRKELANQLTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVR 787
SQR+ELAN+L HVL LSLQMYGCRVIQK + + ++ L G VR
Sbjct: 8 SQRRELANKLFEHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIM-----RCVR 172
Query: 788 AQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDL 847
Q N+ + + C V + S + + S + + + C D
Sbjct: 173 DQNGNHVI------QKCIECVPEDAINFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDP 334
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
TQ+ +M+EI+ +V LAQDQYGNYV+QH+LEHGKP+ER+ +I +LAG+IV+MSQQKFAS
Sbjct: 335 NTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELAGKIVQMSQQKFAS 514
Query: 908 NVIEKCLAFGSPEERQILVNEMLGTSDENEPLQ 940
NV+EKCL FG P ERQ+LVNEMLG++DENEPLQ
Sbjct: 515 NVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQ 613
Score = 58.5 bits (140), Expect = 1e-08
Identities = 51/254 (20%), Positives = 107/254 (42%), Gaps = 6/254 (2%)
Frame = +2
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E +++K K+ E+ + + D GN+VIQK E + +
Sbjct: 62 LQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAINFI 241
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ V+ LS YGCRVIQ++L E C P
Sbjct: 242 VSTFFDQVVTLSTHPYGCRVIQRVL---------------------------EHCKDPNT 340
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ + + V + A Y + VQ + + I++E+ +
Sbjct: 341 QQKVMD----------EILGAVSMLAQ--DQYGNYVVQHVLEHGKPHERSAIIKELAGKI 484
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQ------IVKMSQQKFASNVIEKCLA 915
++Q ++ + V++ L G P+ER ++++++ G + M + +FA+ V++K L
Sbjct: 485 VQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLE 664
Query: 916 FGSPEERQILVNEM 929
++R+++++ +
Sbjct: 665 TCDDQQRELILSRI 706
Score = 50.4 bits (119), Expect = 4e-06
Identities = 27/83 (32%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 685 YSSGFIQQKLETAS-VEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELAN 743
Y IQ+ LE + K+ EIL L D +GNYV+Q EHG +R +
Sbjct: 287 YGCRVIQRVLEHCKDPNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIK 466
Query: 744 QLTGHVLPLSLQMYGCRVIQKLL 766
+L G ++ +S Q + V++K L
Sbjct: 467 ELAGKIVQMSQQKFASNVVEKCL 535
Score = 38.9 bits (89), Expect = 0.011
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +2
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L E+ + E+L +A+M D F NYV+QK E D QR
Sbjct: 506 FASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQR 685
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + +++ H+ L YG ++ ++
Sbjct: 686 ELILSRIKVHLNALKKYTYGKHIVARV 766
Score = 34.3 bits (77), Expect = 0.27
Identities = 13/61 (21%), Positives = 34/61 (55%)
Frame = +2
Query: 864 LAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQ 923
+ +DQ+ NYV+Q +LE +R +++S++ + + + + +++ + + ER+
Sbjct: 617 MMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERR 796
Query: 924 I 924
I
Sbjct: 797 I 799
>TC209647 weakly similar to UP|Q9SVZ7 (Q9SVZ7) Pumilio-like protein, partial
(20%)
Length = 684
Score = 118 bits (295), Expect = 1e-26
Identities = 54/96 (56%), Positives = 73/96 (75%)
Frame = +1
Query: 844 CDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQ 903
C D + I++EI++SVC LAQDQYGNYV QH+LE GKP ER+ ++SKL+G IV++SQ
Sbjct: 70 CTDESQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQILSKLSGHIVQLSQH 249
Query: 904 KFASNVIEKCLAFGSPEERQILVNEMLGTSDENEPL 939
KFASNV+EKCL +G ER++LV E+ G D+ + L
Sbjct: 250 KFASNVVEKCLEYGDATERELLVAEIFGHDDQCDNL 357
Score = 52.8 bits (125), Expect = 7e-07
Identities = 29/83 (34%), Positives = 45/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 685 YSSGFIQQKLETASVEEKTK-IFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELAN 743
Y IQ+ LE + E + + I EIL AL D +GNYV Q E G +R ++ +
Sbjct: 34 YGCRVIQRVLEHCTDESQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQILS 213
Query: 744 QLTGHVLPLSLQMYGCRVIQKLL 766
+L+GH++ LS + V++K L
Sbjct: 214 KLSGHIVQLSQHKFASNVVEKCL 282
Score = 40.0 bits (92), Expect = 0.005
Identities = 23/87 (26%), Positives = 41/87 (46%), Gaps = 6/87 (6%)
Frame = +1
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPH------ARALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ LE E+ + EI H +M D F NYV+QK + +++QR
Sbjct: 253 FASNVVEKCLEYGDATERELLVAEIFGHDDQCDNLLTMMKDQFANYVVQKVIDICSENQR 432
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
L + + H L YG ++ +L
Sbjct: 433 AMLLSHVRIHAHALKKYTYGKHIVARL 513
Score = 34.3 bits (77), Expect = 0.27
Identities = 16/86 (18%), Positives = 45/86 (51%), Gaps = 6/86 (6%)
Frame = +1
Query: 833 YSSLWVQSYSDCDDLKTQEIIMEEIM------QSVCTLAQDQYGNYVIQHILEHGKPNER 886
++S V+ + D +E+++ EI ++ T+ +DQ+ NYV+Q +++ N+R
Sbjct: 253 FASNVVEKCLEYGDATERELLVAEIFGHDDQCDNLLTMMKDQFANYVVQKVIDICSENQR 432
Query: 887 TIVISKLAGQIVKMSQQKFASNVIEK 912
+++S + + + + +++ +
Sbjct: 433 AMLLSHVRIHAHALKKYTYGKHIVAR 510
>BU762090
Length = 285
Score = 66.6 bits (161), Expect(2) = 2e-13
Identities = 31/39 (79%), Positives = 34/39 (86%)
Frame = +3
Query: 728 KFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKLL 766
KFFEHG SQR+ELAN+L GHVL LSLQMYGCRVIQK +
Sbjct: 9 KFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAI 125
Score = 34.3 bits (77), Expect = 0.27
Identities = 16/62 (25%), Positives = 35/62 (55%)
Frame = +3
Query: 853 IMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEK 912
+ +++ V TL+ YG VIQ +E +++ ++ +L G +++ + F +VI+K
Sbjct: 48 LANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDLFVYHVIQK 227
Query: 913 CL 914
C+
Sbjct: 228 CI 233
Score = 32.3 bits (72), Expect = 1.0
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 695 ETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSL 754
E ++ ++ ++L H L ++G VIQK E Q+ E+ +L G+V+
Sbjct: 18 EHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVR 197
Query: 755 QMYGCRVIQKLL 766
++ VIQK +
Sbjct: 198 DLFVYHVIQKCI 233
Score = 28.1 bits (61), Expect(2) = 2e-13
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +2
Query: 780 SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVY 820
S + +G RA W + +CT* +S+VY +CP N +Y
Sbjct: 143 SEDRDGSRA*W*RHALCT*SFCLSRHSKVY*MCP*RCNRLY 265
>BM528794
Length = 432
Score = 70.9 bits (172), Expect = 3e-12
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 14/131 (10%)
Frame = +2
Query: 233 SRPASHNAFVDIRDSTGIVDRE---------PLEGLRSSASTPGLVGLQNHGVN-SHNFS 282
SRPAS NAF + D V+ E + LRS ++ P QN G S++++
Sbjct: 11 SRPASRNAFDENGDIISSVESELAHLRRDSLATDTLRSVSNVPVSSAAQNTGPQASYSYA 190
Query: 283 SVVGSSLSRSTTPESHVIGR-PVGSGVPQMGSKVFSAENIGLGN---HNGHSSNMTDLAD 338
+ +GSSLSRSTTP+ ++ R P P G +V +AE G+ + NG SS + + AD
Sbjct: 191 AALGSSLSRSTTPDPQLVARAPSPCPTPIGGGRVVAAEKRGINSPDAFNGVSSGVNEPAD 370
Query: 339 MVSSLSGLNLS 349
+V++LSG+NLS
Sbjct: 371 IVAALSGMNLS 403
>BM528619
Length = 426
Score = 63.9 bits (154), Expect = 3e-10
Identities = 33/81 (40%), Positives = 49/81 (59%)
Frame = +1
Query: 850 QEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNV 909
QE ++ EI + LAQDQ+GNYV+Q IL+ P+ + + G +S+QKF S V
Sbjct: 19 QEKLIAEICANALLLAQDQFGNYVVQFILDLKIPSATACIRLQFEGNYAHLSRQKFGSLV 198
Query: 910 IEKCLAFGSPEERQILVNEML 930
+EKCLA + E R ++ E+L
Sbjct: 199 VEKCLAVFNDENRSRVILELL 261
Score = 38.5 bits (88), Expect = 0.014
Identities = 23/67 (34%), Positives = 33/67 (48%)
Frame = +1
Query: 700 EEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGC 759
E + K+ EI +A L D FGNYV+Q + S + Q G+ LS Q +G
Sbjct: 13 EYQEKLIAEICANALLLAQDQFGNYVVQFILDLKIPSATACIRLQFEGNYAHLSRQKFGS 192
Query: 760 RVIQKLL 766
V++K L
Sbjct: 193 LVVEKCL 213
Score = 30.0 bits (66), Expect = 5.0
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +1
Query: 685 YSSGFIQQKLETASVEEKTKIFPEIL--PHARALMTDVFGNYVIQKFFEHGTDSQRKELA 742
+ S +++ L + E ++++ E+L PH L+ D NYV+Q H L
Sbjct: 184 FGSLVVEKCLAVFNDENRSRVILELLSMPHFEHLLQDPHANYVVQSALRHSEGRLHNLLV 363
Query: 743 NQLTGH 748
+ H
Sbjct: 364 EAIESH 381
>BE823345
Length = 588
Score = 60.8 bits (146), Expect = 3e-09
Identities = 32/93 (34%), Positives = 52/93 (55%)
Frame = -3
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
+ +E EEI + AQDQ+GNYV+Q L+ P+ + + + V +S QKF S
Sbjct: 583 EXREXXXEEISANALLXAQDQFGNYVVQXXLDLRIPSATATLSLQFERKYVXLSMQKFGS 404
Query: 908 NVIEKCLAFGSPEERQILVNEMLGTSDENEPLQ 940
+V+EKCLA + E + +++E+L + LQ
Sbjct: 403 HVVEKCLAVFNDENQSRVIHELLSAPHFEQLLQ 305
Score = 35.4 bits (80), Expect = 0.12
Identities = 21/67 (31%), Positives = 31/67 (45%)
Frame = -3
Query: 700 EEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGC 759
E + EI +A D FGNYV+Q + S L+ Q + LS+Q +G
Sbjct: 583 EXREXXXEEISANALLXAQDQFGNYVVQXXLDLRIPSATATLSLQFERKYVXLSMQKFGS 404
Query: 760 RVIQKLL 766
V++K L
Sbjct: 403 HVVEKCL 383
Score = 32.3 bits (72), Expect = 1.0
Identities = 20/87 (22%), Positives = 39/87 (43%), Gaps = 7/87 (8%)
Frame = -3
Query: 685 YSSGFIQQKLETASVEEKTKIFPEIL--PHARALMTDVFGNYVIQKFFEHGTDSQRKELA 742
+ S +++ L + E ++++ E+L PH L+ D NYVIQ H L
Sbjct: 412 FGSHVVEKCLAVFNDENQSRVIHELLSAPHFEQLLQDPHANYVIQSALRHSEGHVHNLLV 233
Query: 743 NQLTGHVL-----PLSLQMYGCRVIQK 764
+ H P S +++ ++++K
Sbjct: 232 EAIESHKAISRNSPYSKKIFSQKLLKK 152
>AW830951 weakly similar to GP|9293981|dbj RNA binding protein-like
{Arabidopsis thaliana}, partial (12%)
Length = 358
Score = 45.1 bits (105), Expect(3) = 7e-09
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +1
Query: 788 AQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYS 842
A+W EMC PKW+ C +EV+ + + + +Y W++C + Y+SLW+ S++
Sbjct: 82 ARWKCYEMCPRPKWESCNTEVH*IYSN*KH*LYIICISWSNCSSIYASLWLTSHT 246
Score = 39.3 bits (90), Expect = 0.008
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 833 YSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISK 892
Y L +Q+ DL+ + ++ E+ +V +DQ GN+VIQ +E ++S
Sbjct: 11 YGCLVIQNAL*VIDLEQKALLAHELDGNVMKCVRDQNGNHVIQKCIESIPTKNIDFILSA 190
Query: 893 LAGQIVKMSQQKFASNVIEKCLAFGSPE-ERQILVNEML 930
GQI +S + VI + L S + + Q++V+ +L
Sbjct: 191 FRGQIALLSMHPYG*RVIHRVLEHCSNDVQCQLIVD*IL 307
Score = 35.4 bits (80), Expect = 0.12
Identities = 24/82 (29%), Positives = 37/82 (44%)
Frame = +2
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y IQ L +E+K + E+ + + D GN+VIQK E + +
Sbjct: 11 YGCLVIQNAL*VIDLEQKALLAHELDGNVMKCVRDQNGNHVIQKCIESIPTKNIDFILSA 190
Query: 745 LTGHVLPLSLQMYGCRVIQKLL 766
G + LS+ YG RVI ++L
Sbjct: 191 FRGQIALLSMHPYG*RVIHRVL 256
Score = 31.2 bits (69), Expect(3) = 7e-09
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 851 EIIMEEIMQSVCTLAQDQYGNYV 873
++I++ I++SV TLA D YGNY+
Sbjct: 284 QLIVD*ILESVFTLAHDHYGNYI 352
Score = 21.9 bits (45), Expect(3) = 7e-09
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 754 LQMYGCRVIQKLL 766
L MYGC VIQ L
Sbjct: 2 LHMYGCLVIQNAL 40
>TC204306 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {Mus
musculus;} , partial (3%)
Length = 689
Score = 50.1 bits (118), Expect = 5e-06
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +2
Query: 913 CLAFGSPEERQILVNEMLGTSDENEPLQ 940
CL FG P ERQ+LV+EMLG++DENEPLQ
Sbjct: 2 CLTFGGPSERQLLVSEMLGSTDENEPLQ 85
Score = 37.0 bits (84), Expect = 0.041
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 714 RALMTDVFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKL 765
+A+M D F NYV+QK E D QR+ + ++ H+ L YG ++ ++
Sbjct: 83 QAMMKDQFANYVVQKVLETCDDQQRELILYRIKVHLNALKKYTYGKHIVARV 238
Score = 32.0 bits (71), Expect = 1.3
Identities = 12/61 (19%), Positives = 33/61 (53%)
Frame = +2
Query: 864 LAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQ 923
+ +DQ+ NYV+Q +LE +R +++ ++ + + + + +++ + + ER+
Sbjct: 89 MMKDQFANYVVQKVLETCDDQQRELILYRIKVHLNALKKYTYGKHIVARVEKLVAAGERR 268
Query: 924 I 924
I
Sbjct: 269 I 271
>TC233558
Length = 439
Score = 44.3 bits (103), Expect = 3e-04
Identities = 19/32 (59%), Positives = 25/32 (77%)
Frame = -1
Query: 844 CDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQ 875
C D TQ+ +M+EI+ +V LAQDQYGNYV+Q
Sbjct: 361 CKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQ 266
>AW472289 similar to GP|8809626|dbj| contains similarity to RNA-binding
protein~gene_id:MKN22.2 {Arabidopsis thaliana}, partial
(12%)
Length = 435
Score = 39.7 bits (91), Expect = 0.006
Identities = 18/53 (33%), Positives = 31/53 (57%)
Frame = +3
Query: 689 FIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
F+Q+ + + E+ IF EI+ H LM + FGNY++QK + + QR ++
Sbjct: 267 FLQRIFDEGTPEDVQVIFNEIIDHVAELMMNPFGNYLMQKLLDVCDEKQRMQI 425
>TC225215 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, complete
Length = 1085
Score = 35.4 bits (80), Expect = 0.12
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -3
Query: 330 SSNMTDLADMVSSLSGLNL--SGARRAEQDNLLKSKLQVEVDNHANVMLSTPNNVNLPKH 387
S++MTD+ + SS+ LN S L SKL V + + +LS+P+ NLP H
Sbjct: 738 STSMTDMLVVTSSVGMLNRVHSNTTNLGPAVPLHSKLVVSISSLEKRLLSSPSTCNLPNH 559
Query: 388 NELATDLNTF 397
T N F
Sbjct: 558 GPTVTRNNLF 529
>TC225751 similar to UP|CRT3_ARATH (O04153) Calreticulin 3 precursor, partial
(86%)
Length = 1581
Score = 33.5 bits (75), Expect = 0.45
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +2
Query: 845 DDLKTQEIIMEEIMQSVCTLAQDQYGN-----YVIQHILEHGKPNERTIVISKLAGQIVK 899
D +++QE + ++++S+ T + + GN Y IQH +HGK + + +K G++
Sbjct: 764 DMIRSQEKFLTQMLKSLKTGMKRKMGNGNHQRYQIQHTKDHGKERKSRTLTTKGNGKLHG 943
Query: 900 MSQQKFASNVIEKCLAFGS 918
Q + +I CL+ S
Sbjct: 944 *IIQNLKTTLIFMCLSLSS 1000
>TC212112 weakly similar to UP|Q9M6S0 (Q9M6S0) Pumilio domain-containing
protein PPD1, partial (8%)
Length = 511
Score = 32.3 bits (72), Expect = 1.0
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 685 YSSGFIQQKLETASVEEKTKIF 706
+ S FIQQKLE+ SVEEKT +F
Sbjct: 445 HGSRFIQQKLESCSVEEKTLMF 510
>TC226511 similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, complete
Length = 1208
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 5/74 (6%)
Frame = +2
Query: 666 SSRTTKPNLLNFQISLIMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNY- 724
S+ K L ++ + Y + I KL+TAS T F ++LP + + + +Y
Sbjct: 188 STSVKKGGLSTGDVAALYKYKNTIIDVKLDTASTISTTLTFNDVLPSTKTIASFKLPDYN 367
Query: 725 ----VIQKFFEHGT 734
+Q F +H T
Sbjct: 368 SGKLEVQYFHDHAT 409
>TC205237 similar to UP|Q9SC83 (Q9SC83) VAP27, partial (58%)
Length = 696
Score = 30.4 bits (67), Expect = 3.8
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = -3
Query: 358 NLLKSKLQVEVDNHANVMLSTPNNVNLPKHNELATDLNTFSLNERVNLLKKTASYANLRS 417
NLL + VEV+ H + + TP LP T + N+ N ++ T +S
Sbjct: 676 NLLGQETVVEVEKHTALSICTPQPHALP---PC*TRQQSQLHNKSYNFIQHTEIK*KRKS 506
Query: 418 NAHSTGNLTSIDFAGQVPS 436
N H+T ++++ G VPS
Sbjct: 505 N*HNTYTMSAVISFGLVPS 449
>TC205104 weakly similar to UP|Q6ZFI7 (Q6ZFI7) Calcium-binding EF-hand family
protein-like, partial (26%)
Length = 745
Score = 30.0 bits (66), Expect = 5.0
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 83 NNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIER 140
NNDGVL+ E+R+ + +H I+ PP L+K + +F G S +++R
Sbjct: 267 NNDGVLSRSELRTAFESMRLIETHFGIDVATPPDQLAKLYDSIFDKFD-GDRSGAVDR 437
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.139 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,490,012
Number of Sequences: 63676
Number of extensions: 657858
Number of successful extensions: 4396
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 4272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4382
length of query: 949
length of database: 12,639,632
effective HSP length: 106
effective length of query: 843
effective length of database: 5,889,976
effective search space: 4965249768
effective search space used: 4965249768
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC144720.3