BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144645.3 + phase: 0 /pseudo
(993 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 340 2e-93
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 338 9e-93
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 137 2e-32
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 135 7e-32
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 128 1e-29
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 126 5e-29
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 124 3e-28
CO983516 119 5e-27
CO981879 74 3e-24
CO981347 77 1e-22
BM307983 103 3e-22
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 68 3e-21
TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 ... 99 9e-21
TC232995 96 6e-20
AI959950 91 2e-18
BI427153 90 6e-18
CO983154 88 2e-17
BF595216 55 4e-17
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 87 4e-17
CO982898 61 5e-17
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 340 bits (871), Expect = 2e-93
Identities = 235/755 (31%), Positives = 350/755 (46%), Gaps = 9/755 (1%)
Frame = +1
Query: 20 IVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPF 79
+ G G + I G G+ + P SLN VL L NLI + + D + F
Sbjct: 1768 VTFGDGSKGKIIGMGKL-VHDGLP--SLNKVLLVKGLTANLISISQLC-DEGFNVNFTKS 1935
Query: 80 SFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTLWHNRLGH---PGAN 136
V + ++ + + S + Y T + S++ + +WH R GH G
Sbjct: 1936 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMK 2115
Query: 137 VLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFS-ISNSTTSKPFDIIHSDLWTSPIL 195
+ + I +I IC C GK VK+ + + TTS+ +++H DL +
Sbjct: 2116 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQV 2295
Query: 196 SSAGHKYYLFFL-DDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTE 254
S G K Y + + DD++ F W I KS+ +F ++ + IK + D+G E
Sbjct: 2296 ESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGRE 2475
Query: 255 FNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHAL 314
F N FT+FC G+ FS T QNG ERK R + R L +P + W A+
Sbjct: 2476 FENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 2655
Query: 315 QITTYLQNILPSKILSHHSPTQYLYH----RDPSYTHLRVFGCLCYPLFPSTAINKLQAR 370
Y+ N + L +PT LY R PS H +FG CY L K+ +
Sbjct: 2656 NTACYIHNRVT---LRRGTPTT-LYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPK 2823
Query: 371 STPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHTYEFLNDSLH 430
S FLGY N R Y+ ++ ++ ++ S +V+ D+
Sbjct: 2824 SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDD------------------------ 2931
Query: 431 PLLHYHLQNDPKQDEPEPRKIESPQPATTPASPINVTNQSILPPSPMSINQLPHPLVSTE 490
L K+D E + A S N N S +INQ P ST
Sbjct: 2932 ------LSPARKKDVEEDVRTSGDNVADAAKSGENAEN-SDSATDESNINQ-PDKRSSTR 3087
Query: 491 LTSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNLTTSITSSPLPHNPKAALSDSNWKA 550
+ H + I +P R + T S +++ + S P N K AL+D W
Sbjct: 3088 IQK-MHPKELIIGDPNRGVTTRSR------EVEIVSNSCFVSKIEPKNVKEALTDEFWIN 3246
Query: 551 AMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VG 610
AM +E + +N+ WELVPRP+ N I + WIF++K +G R KARLV G +Q G
Sbjct: 3247 AMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEG 3426
Query: 611 VDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPI 670
VD DETF+PV + +IR++L +A + ++Q+DVK+ FL+G L E VY+ QP GF DP
Sbjct: 3427 VDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPT 3606
Query: 671 HPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYV 730
HPD+V LKK+LYGLKQAPRAWY+R +F G+ D +LF+ + ++ +YV
Sbjct: 3607 HPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYV 3786
Query: 731 DDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
DDI+ S+ + R + + SEF M +G L+YF
Sbjct: 3787 DDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYF 3891
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 338 bits (866), Expect = 9e-93
Identities = 234/755 (30%), Positives = 347/755 (44%), Gaps = 9/755 (1%)
Frame = +1
Query: 20 IVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPF 79
+ G G + I G G+ + P SLN VL L NLI + + D + F
Sbjct: 1771 VTFGDGSKGKITGMGKL-VHDGLP--SLNKVLLVKGLTANLISISQLC-DEGFNVNFTKS 1938
Query: 80 SFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTLWHNRLGH---PGAN 136
V + ++ + + S + Y T + S++ +WH R GH G
Sbjct: 1939 ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMK 2118
Query: 137 VLSFLNKNKFIECKQISSPSICQSCIYGKHVKLPFS-ISNSTTSKPFDIIHSDLWTSPIL 195
+ + I +I IC C GK VK+ + + TTS+ +++H DL +
Sbjct: 2119 KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQV 2298
Query: 196 SSAGHKYYLFFL-DDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTE 254
S G K Y + + DD++ F W I KS +F ++ + IK + D+G E
Sbjct: 2299 ESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGRE 2478
Query: 255 FNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHAL 314
F N FT+FC G+ FS T QNG ERK R + R L +P + W A+
Sbjct: 2479 FENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 2658
Query: 315 QITTYLQNILPSKILSHHSPTQYLYH----RDPSYTHLRVFGCLCYPLFPSTAINKLQAR 370
Y+ N + L +PT LY R P+ H +FG CY L K+ +
Sbjct: 2659 NTACYIHNRVT---LRRGTPTT-LYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPK 2826
Query: 371 STPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHTYEFLNDSLH 430
S FLGY N R Y+ ++ ++ ++ S +V+ D+
Sbjct: 2827 SDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDD------------------------ 2934
Query: 431 PLLHYHLQNDPKQDEPEPRKIESPQPATTPASPINVTNQSILPPSPMSINQLPHPLVSTE 490
L K+D E + A T S N N P +INQ P S
Sbjct: 2935 ------LTPARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDEP-NINQ-PDKRPSIR 3090
Query: 491 LTSPTHTPQQIHQEPPRTIATHSMHGIHKPKIQFNLTTSITSSPLPHNPKAALSDSNWKA 550
+ H + I +P R + T S +I+ + S P N K AL+D W
Sbjct: 3091 IQK-MHPKELIIGDPNRGVTTRSR------EIEIVSNSCFVSKIEPKNVKEALTDEFWIN 3249
Query: 551 AMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VG 610
AM +E + +N+ WELVPRP+ N I + WIF++K +G R KARLV G +Q G
Sbjct: 3250 AMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEG 3429
Query: 611 VDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPI 670
VD DETF+PV + +IR++L +A + ++Q+DVK+ FL+G L E Y+ QP GF DP
Sbjct: 3430 VDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPT 3609
Query: 671 HPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYV 730
HPD+V LKK+LYGLKQAPRAWY+R +F G+ D +LF+ + ++ +YV
Sbjct: 3610 HPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYV 3789
Query: 731 DDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
DDI+ S+ + R + + SEF M +G L+YF
Sbjct: 3790 DDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYF 3894
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 137 bits (346), Expect = 2e-32
Identities = 66/149 (44%), Positives = 98/149 (65%)
Frame = -3
Query: 551 AMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VG 610
AM +E + +N W+LV +P+N I + W+FR+K G R KARLV G +Q G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 611 VDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPI 670
+D +ET++PV + IR++L ++ ++Q+DVK+ FL+G +QE VY+ QP GF P
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 671 HPDYVCLLKKSLYGLKQAPRAWYQRFADF 699
P +V L+K+LYGLKQAPRAWY+R ++F
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNF 12
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 135 bits (341), Expect = 7e-32
Identities = 89/287 (31%), Positives = 137/287 (47%)
Frame = +2
Query: 20 IVVGSGQEIPIRGYGQTYISPPYPPLSLNNVLHAPKLIKNLIFVRRFTIDNNVTIEFDPF 79
I + G + G G P LSLN+V+ N+ + + T N ++ FD
Sbjct: 20 ITLADGSRVVATGIGHV---SPTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDAN 190
Query: 80 SFSVEDIQTGIPLMRCDSTGDLYPLTTTTSHQSTSPATFAALSPTLWHNRLGHPGANVLS 139
SF +++ TG + + LY L S + A SP L H RLGHP + L
Sbjct: 191 SFVIQECGTGWTIGVGIESHGLYYLKPNLSWVCS-----AVTSPKLLHERLGHPHLSKLK 355
Query: 140 FLNKNKFIECKQISSPSICQSCIYGKHVKLPFSISNSTTSKPFDIIHSDLWTSPILSSAG 199
+ + + C+SC GKHV+ S PF +IH D+W +SS
Sbjct: 356 IM-----VPSLEKIKDLFCESCQLGKHVRSSXRHVESRVDSPFLVIHXDIWGPNRVSSMS 520
Query: 200 HKYYLFFLDDYTNFVWTFPIGRKSQVPSIFSSFHAFIKTQFGTTIKCFQCDNGTEFNNEY 259
++Y++ F+D+++ F + +S++ S +S + IKTQFG TIK + DN E+ +
Sbjct: 521 YRYFVTFIDEFSQCTRVFLMKERSEILSFLTSVNK-IKTQFGKTIKILRSDNAKEYFSSV 697
Query: 260 FTQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMP 306
+ F G++ +FSCPHT QN AERK R + RT L H++ P
Sbjct: 698 ISPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEP 838
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 128 bits (322), Expect = 1e-29
Identities = 62/130 (47%), Positives = 82/130 (62%)
Frame = -2
Query: 568 VPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIR 627
VP P + W++ K G +R KARLV G +Q G+D +TFSPV K TT+R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 628 IVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQ 687
+ L +A WP+HQLD+KN FLHG+L+E +YM QP GF VC L +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 688 APRAWYQRFA 697
+PRAW+ +F+
Sbjct: 46 SPRAWFGKFS 17
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 126 bits (316), Expect = 5e-29
Identities = 59/134 (44%), Positives = 83/134 (61%)
Frame = +3
Query: 530 ITSSPLPHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKS 589
++S +P + AL W+ AM+DE AL N TWELVP P + W++ K
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 590 DGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVF 649
+G +R KARLV G +Q G++ +TFSPV TT+R+ L +A + WP+HQLD+KN F
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 650 LHGELQETVYMHQP 663
LHG+L+E +YM QP
Sbjct: 363 LHGDLEEDIYMEQP 404
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 124 bits (310), Expect = 3e-28
Identities = 71/176 (40%), Positives = 98/176 (55%), Gaps = 1/176 (0%)
Frame = +1
Query: 591 GSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFL 650
G+ +++KARLV +Q G D TFSPV K + ++ ++A+ WP+ LD KN FL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 651 HGELQETVYMHQPMGF-RDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSK 709
HG L+E VYM QP+GF + VC L +S YGLKQ+PRAW F I + +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSHE 381
Query: 710 SDHSLFIYRKGNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
+DHS+F Y+++YVDDI +T S + L +F KDLG L YF
Sbjct: 382 ADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYF 549
>CO983516
Length = 724
Score = 119 bits (299), Expect = 5e-27
Identities = 55/122 (45%), Positives = 80/122 (65%)
Frame = +2
Query: 613 CDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHP 672
CD+ F PV + +IR++L +A + ++Q+DVK+ FL+G L E VY+ QP GF DP HP
Sbjct: 353 CDKEFHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHP 532
Query: 673 DYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRKGNDMTYILLYVDD 732
D+V LKK+LYGLKQAPRAWY+R + G+ D +LF+ + ++ +YVDD
Sbjct: 533 DHVYRLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDD 712
Query: 733 II 734
I+
Sbjct: 713 IV 718
>CO981879
Length = 576
Score = 73.9 bits (180), Expect(2) = 3e-24
Identities = 38/96 (39%), Positives = 54/96 (55%)
Frame = -1
Query: 227 SIFSSFHAFIKTQFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAE 286
SIF +F I+TQF IK F+ DNG E+ N++ ++ +NG++ + SC T QNG AE
Sbjct: 573 SIFKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAE 394
Query: 287 RKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQN 322
RK R + R L + P W A+ TYL+N
Sbjct: 393 RKNRHLXEVARALLFQNKAPKYXWGEAILTGTYLKN 286
Score = 57.4 bits (137), Expect(2) = 3e-24
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = -2
Query: 324 LPSKILSHHSPTQYLYHRDPSYT-----HLRVFGCLCYPLFPSTAINKLQARSTPCAFLG 378
+PSKIL+ +P P+ L++FGC + KL+ R+ C F+G
Sbjct: 281 MPSKILNFRTPLDVFTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFVG 102
Query: 379 YPQNHRGYKCYDLSSKKIIISRHVIFDE 406
Y N +GYKC+D +SKK ++ V F E
Sbjct: 101 YAPNQKGYKCFDPTSKKTFVTIDVTFFE 18
>CO981347
Length = 624
Score = 76.6 bits (187), Expect(3) = 1e-22
Identities = 42/108 (38%), Positives = 53/108 (48%)
Frame = +2
Query: 229 FSSFHAFIKTQFGTTIKCFQCDNGTEFNNEYFTQFCHKNGMVFRFSCPHTSPQNGKAERK 288
F H I Q GT +K + DNG EF E F +FC K G+ PHT QNG AER
Sbjct: 116 FRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLAERM 295
Query: 289 IRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQ 336
I +R L + +P +FW A T+YL N PS L +P +
Sbjct: 296 NMTILERVRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTPME 439
Score = 41.2 bits (95), Expect(3) = 1e-22
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 341 RDPSYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDL 391
+ P+Y+ L+VFG L F KL AR+ C F+GYP+ + YK + L
Sbjct: 453 KPPNYSGLKVFGSLA---FDHVKQGKLDARAVKCVFIGYPKGVKRYKLWKL 596
Score = 28.1 bits (61), Expect(3) = 1e-22
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 192 SPILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQ 224
S + + G Y+L +DD++ VW + + KS+
Sbjct: 6 SRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSE 104
>BM307983
Length = 406
Score = 103 bits (258), Expect = 3e-22
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Frame = +2
Query: 581 WIFRHKKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSK-SWP 639
WI+ K +D + +RYKARLV G Q G+D +ETF+ K ++ W
Sbjct: 14 WIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQFGWE 193
Query: 640 IHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADF 699
+HQ DVKN FLHG L+E VYM P G+ + VC LKK+LYGLKQ+PRAW+ RF
Sbjct: 194 MHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGRFTQA 373
Query: 700 AFTIGFSHSK 709
++G+ S+
Sbjct: 374 MLSLGYKQSQ 403
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 67.8 bits (164), Expect(2) = 3e-21
Identities = 37/95 (38%), Positives = 51/95 (52%)
Frame = +1
Query: 528 TSITSSPLPHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKK 587
T + ++ P K AL W+ AM +FDAL++NKT L P I W+FR K+
Sbjct: 10 TLLFTTAEPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKE 189
Query: 588 KSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVK 622
G+ RY++RLV G G D ETFSPV++
Sbjct: 190 NLYGTLNRYRSRLVAKGFHLKFGCDYSETFSPVIE 294
Score = 53.5 bits (127), Expect(2) = 3e-21
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = +3
Query: 625 TIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGF 666
TIR++L IAL+ WP+ Q+D+ N FLHG L E VYM Q GF
Sbjct: 300 TIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPGF 425
>TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 (Fragment)
, partial (21%)
Length = 912
Score = 99.0 bits (245), Expect = 9e-21
Identities = 46/102 (45%), Positives = 63/102 (61%)
Frame = -2
Query: 305 MPPSFWHHALQITTYLQNILPSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAI 364
MPP+FW++AL YL N +P+ L + SP + L+ P +HLR+FGCLCY
Sbjct: 911 MPPNFWNYALLHAAYLINCIPTPFLQNTSPYERLHGHIPDISHLRIFGCLCYASTIKANR 732
Query: 365 NKLQARSTPCAFLGYPQNHRGYKCYDLSSKKIIISRHVIFDE 406
KL+ R+ PC F+G+ N +GY YDL S II SR+V+F E
Sbjct: 731 KKLEPRAHPCIFIGFKPNTKGYMLYDLHSHNIITSRNVVFYE 606
>TC232995
Length = 1009
Score = 96.3 bits (238), Expect = 6e-20
Identities = 49/106 (46%), Positives = 67/106 (62%)
Frame = +2
Query: 660 MHQPMGFRDPIHPDYVCLLKKSLYGLKQAPRAWYQRFADFAFTIGFSHSKSDHSLFIYRK 719
+ QP GF P++V L+K+LYGLKQAPRAWY+R ++F FS K D +LFI RK
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 720 GNDMTYILLYVDDIILTASSDVLRRSIMSLLASEFAMKDLGTLSYF 765
ND+ + +YVDDII +++D L + + SEF M +G L YF
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYF 319
>AI959950
Length = 466
Score = 90.9 bits (224), Expect = 2e-18
Identities = 51/130 (39%), Positives = 73/130 (55%)
Frame = -1
Query: 551 AMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFERYKARLVGDGRSQ*VG 610
AM +E D KN +LV P+ + WIF +K DG RYKARLV G SQ G
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 611 VDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPI 670
+D +TF+ V + I I+L+ A + ++Q+DVK+ FL+G +Q+ VY+ QP GF +
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 671 HPDYVCLLKK 680
+V L K
Sbjct: 31 LHQHVFKLNK 2
>BI427153
Length = 422
Score = 89.7 bits (221), Expect = 6e-18
Identities = 48/134 (35%), Positives = 72/134 (52%), Gaps = 1/134 (0%)
Frame = +1
Query: 274 SCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHS 333
+CPHT QNG AERK + R+ + +S++P W A+ +L N +PS L +
Sbjct: 10 TCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLENQI 189
Query: 334 PTQYLYHRDPS-YTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLS 392
P ++ D Y +VFGC C+ S ++KL ARS C FLGY + +GY CY +
Sbjct: 190 PHSIVFPNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYTCYFPN 369
Query: 393 SKKIIISRHVIFDE 406
++ +S +V F E
Sbjct: 370 MRRYYMSANVTFFE 411
>CO983154
Length = 568
Score = 88.2 bits (217), Expect = 2e-17
Identities = 52/146 (35%), Positives = 79/146 (53%), Gaps = 4/146 (2%)
Frame = +3
Query: 277 HTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYLQNILPSKILSHHSPTQ 336
HT QNG AERK R + R+ + + ++P W A+ + +L N +PS L + P
Sbjct: 3 HTPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHS 182
Query: 337 YLYHRDPSYTHL--RVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHRGYKCYDLSSK 394
++ DP + H+ +VFGC C+ S ++KL ARS C FLGY + +GYKCY + +
Sbjct: 183 LVFPHDPLF-HVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTMR 359
Query: 395 KIIISRHVIF--DETQFPFAKTHTSS 418
+ +S V F D F + H+SS
Sbjct: 360 RYYMSADVTFFEDTPFFSPSVDHSSS 437
>BF595216
Length = 421
Score = 55.1 bits (131), Expect(2) = 4e-17
Identities = 28/50 (56%), Positives = 32/50 (64%)
Frame = +3
Query: 634 LSKSWPIHQLDVKNVFLHGELQETVYMHQPMGFRDPIHPDYVCLLKKSLY 683
L+ WPI QLDV N FL+G LQE VYM QP GF D VC L K++Y
Sbjct: 273 LTYHWPIQQLDVNNAFLNGILQEEVYMQQPPGF-DSTTKSLVCKLHKAIY 419
Score = 52.4 bits (124), Expect(2) = 4e-17
Identities = 25/50 (50%), Positives = 36/50 (72%)
Frame = +1
Query: 586 KKKSDGSFERYKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALS 635
K+ SDG+ +YKA+LV G Q G D ETFS V+KP T+R++LT+A++
Sbjct: 124 KENSDGTVNKYKAKLVAKGFHQQYGTDYIETFSLVIKPITMRLLLTLAVT 273
Score = 37.7 bits (86), Expect = 0.025
Identities = 16/45 (35%), Positives = 29/45 (63%), Gaps = 1/45 (2%)
Frame = +2
Query: 187 SDLWT-SPILSSAGHKYYLFFLDDYTNFVWTFPIGRKSQVPSIFS 230
SDL + +P +SS G+ YY+ F+D +T + W F + KS+ ++ +
Sbjct: 8 SDLCSPAPFVSSTGYSYYVTFVDAFTRYTWIFLLRHKSEKKTLMA 142
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 87.0 bits (214), Expect = 4e-17
Identities = 42/110 (38%), Positives = 65/110 (58%)
Frame = +3
Query: 536 PHNPKAALSDSNWKAAMLDEFDALIKNKTWELVPRPQNVNFIRSMWIFRHKKKSDGSFER 595
P N K A+ D NW M +E + +N W+LV +P+N I + W+FR+K G R
Sbjct: 6 PKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIR 185
Query: 596 YKARLVGDGRSQ*VGVDCDETFSPVVKPTTIRIVLTIALSKSWPIHQLDV 645
KARLV G +Q G+D +ET++PV + IR++L A ++ ++Q+DV
Sbjct: 186 NKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO982898
Length = 816
Score = 60.8 bits (146), Expect(2) = 5e-17
Identities = 32/97 (32%), Positives = 51/97 (51%)
Frame = -1
Query: 325 PSKILSHHSPTQYLYHRDPSYTHLRVFGCLCYPLFPSTAINKLQARSTPCAFLGYPQNHR 384
P+ ++ P L+++ Y+ RVFGC C+PL I K +S C FLG +H+
Sbjct: 597 PTVSINFAVPYTQLFNQMLDYSFPRVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSHK 418
Query: 385 GYKCYDLSSKKIIISRHVIFDETQFPFAKTHTSSTHT 421
YKC + K ++S+ VIF+E FP+ + + T
Sbjct: 417 NYKCLAPAGK--LVSKDVIFNEI*FPYKELFLPDSST 313
Score = 46.2 bits (108), Expect(2) = 5e-17
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = -3
Query: 261 TQFCHKNGMVFRFSCPHTSPQNGKAERKIRAINNFIRTSLAHSSMPPSFWHHALQITTYL 320
T+F + G++ + PHT QN ERK R I F + L+H+S+P FW HA +L
Sbjct: 787 TEFLND*GIIHKLIFPHTQYQN-VVERKQRHIVKFGLSLLSHASLPLKFWGHAFITPVFL 611
Query: 321 QNILP 325
N LP
Sbjct: 610 INRLP 596
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.332 0.142 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,073,345
Number of Sequences: 63676
Number of extensions: 1089138
Number of successful extensions: 9888
Number of sequences better than 10.0: 272
Number of HSP's better than 10.0 without gapping: 8898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9520
length of query: 993
length of database: 12,639,632
effective HSP length: 107
effective length of query: 886
effective length of database: 5,826,300
effective search space: 5162101800
effective search space used: 5162101800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 64 (29.3 bits)
Medicago: description of AC144645.3