TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144645.10 - phase: 0 /pseudo
         (70 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC220954 weakly similar to UP|Q84UC4 (Q84UC4) HASTY, partial (19%)     25  5.8
TC209072                                                               25  5.8
BU761163 similar to GP|16323188|gb| AT5g67320/K8K14_4 {Arabidops...    25  7.6
AW234605                                                               25  7.6
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    25  7.6
TC208449 homologue to UP|BCCP_SOYBN (Q42783) Biotin carboxyl car...    25  9.9

>TC220954 weakly similar to UP|Q84UC4 (Q84UC4) HASTY, partial (19%)
          Length = 724

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = -1

Query: 7   TDGASVHVEASKYVDS---------SVLPLQAHEVDTARFFQTTLSRKI 46
           T   SVHV+ASK++ S            P   H+   ++FF+  +S ++
Sbjct: 385 TASPSVHVKASKHICSVGRTRHSCFRRKPTMEHDATVSKFFREDISNRL 239


>TC209072 
          Length = 1312

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 10   ASVHVEASKYVDSSVLPLQAH---EVDTARFFQTTLSRKIEKNCLNGHVVKQIRWD 62
            ++++++    +DS  LPLQ H   ++    F    + RK ++ C   H+    RW+
Sbjct: 1275 SNIYIKFHNVLDSFFLPLQTHN*IQLYL*GFPNILIVRKADRICCYCHIES*KRWN 1108


>BU761163 similar to GP|16323188|gb| AT5g67320/K8K14_4 {Arabidopsis
           thaliana}, partial (11%)
          Length = 445

 Score = 25.0 bits (53), Expect = 7.6
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -2

Query: 21  DSSVLPLQAHEVDTARFFQTTLSRKIEKNCLNGHVVKQI 59
           ++  +PLQ HE +  R  +  +  ++EK  +NG  ++++
Sbjct: 174 EARTVPLQEHERERGREGEREVWLRLEKKKVNGERLREV 58


>AW234605 
          Length = 322

 Score = 25.0 bits (53), Expect = 7.6
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
 Frame = +3

Query: 6   NTDGASVHVEASKYVDSSVL-----PLQAHEVDTARF----FQTTLSRKIEKNCLNGHVV 56
           N   + +HV A + V+SSVL     P     VD  R     F   +  ++    +N HV+
Sbjct: 39  NPADSIIHVVAKRLVESSVLVFKMEPAVRSTVDAPRAARIDFVAVIVLRVNAEAVNVHVL 218

Query: 57  KQI 59
            QI
Sbjct: 219 LQI 227


>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
          Length = 803

 Score = 25.0 bits (53), Expect = 7.6
 Identities = 16/61 (26%), Positives = 30/61 (48%), Gaps = 1/61 (1%)
 Frame = +2

Query: 8   DGASVHVEASKYVDSSVLPLQAHEVDTARFFQTTLSRKIEKN-CLNGHVVKQIRWDLQLL 66
           DG   + +  +YV+S   PL+A + D  R       R++     ++G ++ +   D+ LL
Sbjct: 521 DGKPWYFDIKRYVESKEYPLEASDNDKRR------KRRLAAGFFMSGSILYKRNHDMVLL 682

Query: 67  H 67
           H
Sbjct: 683 H 685


>TC208449 homologue to UP|BCCP_SOYBN (Q42783) Biotin carboxyl carrier protein
           of acetyl-CoA carboxylase, chloroplast precursor (BCCP)
           , complete
          Length = 1099

 Score = 24.6 bits (52), Expect = 9.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 50  CLNGHVVKQIRWDLQLLHK 68
           CLN H++  +RW +  LH+
Sbjct: 438 CLNHHLLLNLRWCIHPLHQ 494


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,036,901
Number of Sequences: 63676
Number of extensions: 29413
Number of successful extensions: 97
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of query: 70
length of database: 12,639,632
effective HSP length: 46
effective length of query: 24
effective length of database: 9,710,536
effective search space: 233052864
effective search space used: 233052864
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)