BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144644.6 + phase: 0
(235 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217849 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociati... 313 4e-86
TC211794 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociati... 297 3e-81
TC218850 similar to UP|Q705X4 (Q705X4) Rho GDP dissociation inhi... 193 5e-50
TC218849 similar to UP|Q705X4 (Q705X4) Rho GDP dissociation inhi... 110 4e-45
TC231284 homologue to UP|Q705X3 (Q705X3) Rho GDP dissociation in... 174 2e-44
TC217850 weakly similar to UP|Q8H740 (Q8H740) RING-H2 protein, p... 61 4e-10
TC234796 homologue to UP|Q705X4 (Q705X4) Rho GDP dissociation in... 53 1e-07
TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protei... 32 0.19
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 32 0.25
BQ253805 30 1.2
TC204794 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete 30 1.2
TC229280 similar to UP|NK61_HUMAN (P78426) Homeobox protein Nkx-... 30 1.2
TC218919 homologue to UP|Q39892 (Q39892) Nucleosome assembly pro... 29 2.1
TC215868 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (50%) 28 2.8
TC217932 similar to UP|Q9LIH5 (Q9LIH5) Arabidopsis thaliana geno... 28 2.8
TC222427 28 2.8
TC226274 similar to UP|Q8L5W5 (Q8L5W5) VERNALIZATION INDEPENDENC... 28 3.6
TC207350 homologue to UP|Q40207 (Q40207) RAB1Y (Fragment), complete 28 3.6
TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, pa... 28 3.6
>TC217849 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociation inhibitor
1, partial (66%)
Length = 1067
Score = 313 bits (802), Expect = 4e-86
Identities = 168/253 (66%), Positives = 192/253 (75%), Gaps = 19/253 (7%)
Frame = +1
Query: 1 MSAAVGAVSTTKDVSFNAHLEEEHKNKGTNKV----------------GVNYDEAEEIVP 44
MSAAV STT HLEEE KNK TN G N D AEE P
Sbjct: 223 MSAAVS--STTP------HLEEELKNKATNNKKKNNVGGESDQPPYNDGANSDVAEETEP 378
Query: 45 DEDEEE--EPKLELDLGPQFSLKEQLEKDKDDESLRKWKEQLLGNVDVSAVG-EKIEPEV 101
+ED++ E +LDLGPQF+LKEQLEKDKDDESLRKWKEQLLG+VD+S VG E +PEV
Sbjct: 379 EEDDDSKLESNKDLDLGPQFTLKEQLEKDKDDESLRKWKEQLLGSVDMSVVGSESKDPEV 558
Query: 102 KIVSLTIICQGRPDLILPIPFTADSKKSMFTLKEGSQYRLKFSFTVSNNIVSGLRYTNVV 161
KI+SL I +PDL LPIPFT D+KKS+F LKEGS+ ++KF+FTVSNNIVSGL+YTNVV
Sbjct: 559 KILSLIITSPDKPDLTLPIPFTTDAKKSLFILKEGSKCQMKFTFTVSNNIVSGLKYTNVV 738
Query: 162 WKTGVRVENTKKMLGTYSPQQEPYTYELEEEITPSGLFARGTYSARTKFVDDDRKCYLDA 221
WKTGVRV++ KKMLGT+SP+QEPYT+ELEEE PSG+F RGTY+ARTKFVDDDRKCYLD
Sbjct: 739 WKTGVRVDSRKKMLGTFSPKQEPYTFELEEETIPSGMFVRGTYAARTKFVDDDRKCYLDV 918
Query: 222 SYRFEIQKNWPTP 234
SY FEIQKN PTP
Sbjct: 919 SYYFEIQKNRPTP 957
>TC211794 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociation inhibitor
1, partial (62%)
Length = 695
Score = 297 bits (760), Expect = 3e-81
Identities = 143/160 (89%), Positives = 151/160 (94%)
Frame = +2
Query: 75 ESLRKWKEQLLGNVDVSAVGEKIEPEVKIVSLTIICQGRPDLILPIPFTADSKKSMFTLK 134
ESLRKWKEQLLG +DVSAVGE EPEVKIVSLTIIC GRPDLILPIPFT+D+KKS+FTLK
Sbjct: 17 ESLRKWKEQLLGGIDVSAVGENKEPEVKIVSLTIICPGRPDLILPIPFTSDAKKSIFTLK 196
Query: 135 EGSQYRLKFSFTVSNNIVSGLRYTNVVWKTGVRVENTKKMLGTYSPQQEPYTYELEEEIT 194
EGSQY+LKFSFTVSNNIVSGL+YTNVVWKTG+RV+NTKKMLGTYSP QE YTYELEEE T
Sbjct: 197 EGSQYQLKFSFTVSNNIVSGLKYTNVVWKTGLRVDNTKKMLGTYSPSQELYTYELEEETT 376
Query: 195 PSGLFARGTYSARTKFVDDDRKCYLDASYRFEIQKNWPTP 234
PSGLFARGTYSARTKFVDDDRKCYLD SY FEIQKNWPTP
Sbjct: 377 PSGLFARGTYSARTKFVDDDRKCYLDTSYHFEIQKNWPTP 496
>TC218850 similar to UP|Q705X4 (Q705X4) Rho GDP dissociation inhibitor 1,
partial (79%)
Length = 807
Score = 193 bits (491), Expect = 5e-50
Identities = 96/200 (48%), Positives = 143/200 (71%), Gaps = 7/200 (3%)
Frame = +2
Query: 37 DEAEEIVPDEDEEEEPKLELDL------GPQFSLKEQLEKDKDDESLRKWKEQLLGNVDV 90
D+ +E +E+EEEE +E GP SLKEQ+E+DK+DESLR+WKE+LLG ++
Sbjct: 71 DDDKEEEEEEEEEEEGAIEDSKNGFFVPGPLLSLKEQIERDKEDESLRRWKEKLLGCLE- 247
Query: 91 SAVGEKIEPEVKIVSLTIICQGRPDLILPIPFTADSKK-SMFTLKEGSQYRLKFSFTVSN 149
S + +++PEVK S+ I+ + +++ P+P + ++FTL+EGS+Y+LK F+V +
Sbjct: 248 SDIDGQLDPEVKFHSIGILSEDFGEIVTPLPVDENRNGCTLFTLREGSRYQLKLKFSVLH 427
Query: 150 NIVSGLRYTNVVWKTGVRVENTKKMLGTYSPQQEPYTYELEEEITPSGLFARGTYSARTK 209
NIVSGL Y+N VWK G++V+ +K MLG ++PQ+EPY Y L+E+ TPSG ARG YSA+ K
Sbjct: 428 NIVSGLTYSNTVWKGGLQVDQSKGMLGAFAPQKEPYVYALKEDTTPSGALARGVYSAKLK 607
Query: 210 FVDDDRKCYLDASYRFEIQK 229
F DDDR+C+++ Y FEI+K
Sbjct: 608 FEDDDRRCHMELKYLFEIKK 667
>TC218849 similar to UP|Q705X4 (Q705X4) Rho GDP dissociation inhibitor 1,
partial (79%)
Length = 826
Score = 110 bits (275), Expect(2) = 4e-45
Identities = 65/134 (48%), Positives = 86/134 (63%), Gaps = 6/134 (4%)
Frame = +2
Query: 38 EAEEIVPDEDEEEEP-----KLELDLGPQFSLKEQLEKDKDDESLRKWKEQLLGNVDVSA 92
EAEE E+EEEE + GP SLK+Q+EKDK+DESLR+WKE+LLG ++
Sbjct: 206 EAEEEEETEEEEEEDVCQHKNITFVPGPLLSLKDQIEKDKEDESLRRWKEKLLGCMESDL 385
Query: 93 VGEKIEPEVKIVSLTIICQGRPDLILPIPF-TADSKKSMFTLKEGSQYRLKFSFTVSNNI 151
G+ I PEVK S+ II + ++I P+ + + +FTLKEGS Y+LK F+V +NI
Sbjct: 386 DGQ-IHPEVKFHSIGIISEDFGEVITPLSVDESQNGHILFTLKEGSHYQLKLKFSVLHNI 562
Query: 152 VSGLRYTNVVWKTG 165
VSGL Y N VWK G
Sbjct: 563 VSGLTYCNNVWKGG 604
Score = 88.6 bits (218), Expect(2) = 4e-45
Identities = 37/67 (55%), Positives = 54/67 (80%)
Frame = +3
Query: 163 KTGVRVENTKKMLGTYSPQQEPYTYELEEEITPSGLFARGTYSARTKFVDDDRKCYLDAS 222
K G++V+ +K MLGT++PQ+EPY + L+E+ITPSG+ ARG YSA+ KF DDDR+C+++
Sbjct: 597 KEGLQVDQSKGMLGTFAPQKEPYVHTLKEDITPSGVLARGVYSAKIKFEDDDRRCHMELK 776
Query: 223 YRFEIQK 229
Y EI+K
Sbjct: 777 YSLEIKK 797
>TC231284 homologue to UP|Q705X3 (Q705X3) Rho GDP dissociation inhibitor 2,
partial (55%)
Length = 611
Score = 174 bits (442), Expect = 2e-44
Identities = 79/126 (62%), Positives = 101/126 (79%)
Frame = +3
Query: 106 LTIICQGRPDLILPIPFTADSKKSMFTLKEGSQYRLKFSFTVSNNIVSGLRYTNVVWKTG 165
L I RPD++L IP + K FTLKEGS+YRL F+F V NNIVSGL+YTN VWKTG
Sbjct: 3 LAIKSADRPDIVLAIPEGGNPKGLWFTLKEGSRYRLMFTFQVENNIVSGLKYTNTVWKTG 182
Query: 166 VRVENTKKMLGTYSPQQEPYTYELEEEITPSGLFARGTYSARTKFVDDDRKCYLDASYRF 225
++V+++K+M+GT+SPQ EPYT+E+ EE TPSG+FARG YSAR+KFVDDD KCYL+ +Y F
Sbjct: 183 IKVDSSKEMIGTFSPQAEPYTHEMPEETTPSGMFARGQYSARSKFVDDDNKCYLEINYTF 362
Query: 226 EIQKNW 231
+I+K W
Sbjct: 363 DIRKEW 380
>TC217850 weakly similar to UP|Q8H740 (Q8H740) RING-H2 protein, partial (7%)
Length = 436
Score = 61.2 bits (147), Expect = 4e-10
Identities = 43/87 (49%), Positives = 48/87 (54%), Gaps = 15/87 (17%)
Frame = +1
Query: 1 MSAAVGAVSTTKDVSFNAHLEEEHKNKGTNK-------------VGVNYDEAEEIVPDED 47
MSAAV STT +HLEEE KN N G N D AEE P+ED
Sbjct: 193 MSAAVS--STT------SHLEEELKNNNNNNNNVGGESDQPPYNEGANSDVAEETEPEED 348
Query: 48 EEE--EPKLELDLGPQFSLKEQLEKDK 72
++ E ELDLGPQF+LKEQLEKDK
Sbjct: 349 DDSKLESNKELDLGPQFTLKEQLEKDK 429
>TC234796 homologue to UP|Q705X4 (Q705X4) Rho GDP dissociation inhibitor 1,
partial (22%)
Length = 433
Score = 53.1 bits (126), Expect = 1e-07
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Frame = +2
Query: 40 EEIVPDEDEEEEPKLELDL--------GPQFSLKEQLEKDKDDESLRKWKEQLLG 86
E +E+ EEE + ++D GP SLK+Q+EKDK+DESLR+WKE+LLG
Sbjct: 209 EAAAEEEETEEEEEDDVDHHNNSTFVPGPLLSLKDQIEKDKEDESLRRWKEKLLG 373
>TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1,
partial (18%)
Length = 451
Score = 32.3 bits (72), Expect = 0.19
Identities = 22/90 (24%), Positives = 46/90 (50%)
Frame = +2
Query: 22 EEHKNKGTNKVGVNYDEAEEIVPDEDEEEEPKLELDLGPQFSLKEQLEKDKDDESLRKWK 81
++H+ K N +E EE V +E+ EEE + E + + +E E++++D+ +
Sbjct: 149 KQHQPKPENAAQEYEEEVEEEVEEEEVEEEVEEEEE---EEEDEEDEEEEEEDQKDQYQH 319
Query: 82 EQLLGNVDVSAVGEKIEPEVKIVSLTIICQ 111
+Q + D + + +EP K L ++C+
Sbjct: 320 QQQQQDEDDDPISKLLEPLSKDQLLILLCE 409
Score = 31.2 bits (69), Expect = 0.43
Identities = 21/69 (30%), Positives = 36/69 (51%)
Frame = +2
Query: 16 FNAHLEEEHKNKGTNKVGVNYDEAEEIVPDEDEEEEPKLELDLGPQFSLKEQLEKDKDDE 75
+ +EEE + + + +E EE DE+EEEE D Q+ ++Q ++D+DD+
Sbjct: 188 YEEEVEEEVEEEEVEEEVEEEEEEEEDEEDEEEEEE-----DQKDQYQHQQQ-QQDEDDD 349
Query: 76 SLRKWKEQL 84
+ K E L
Sbjct: 350 PISKLLEPL 376
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 32.0 bits (71), Expect = 0.25
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 37 DEAEEIVPDEDEEEEPKLELDLGPQFSLKEQLEKDKDDESLRK-----WKEQLLGNV-DV 90
+E EE DE+EEEE + E + ++Q ++D+DD + K K+QLL + D
Sbjct: 179 EEEEEEEEDEEEEEEEEEEEEENDVVKQQQQQQQDEDDIPISKLLEPLGKDQLLNLLCDA 358
Query: 91 SAVGEKIEPEVK 102
+A +E ++
Sbjct: 359 AAKHRDVEERIR 394
Score = 28.9 bits (63), Expect = 2.1
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 36 YDEAEEIVPD-EDEEEEPKLELDLGPQFSLKEQLEKDKDDESLRKWKEQLLGNVDVSAVG 94
Y+E EE V + E EEE + E + +E+ E+++++ + K ++Q + D +
Sbjct: 125 YEEVEEEVEEEEVEEEVEEEEEEEEEDEEEEEEEEEEEEENDVVKQQQQQQQDEDDIPIS 304
Query: 95 EKIEPEVKIVSLTIIC 110
+ +EP K L ++C
Sbjct: 305 KLLEPLGKDQLLNLLC 352
>BQ253805
Length = 425
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 15 SFNAHLEEEHKNKGTNKVGVNYDE--AEEIVPDEDEEEEPKLELDLG 59
S N +LEEEH N +N +E AE++ +E+EEEE + D G
Sbjct: 204 SNNHNLEEEHSN-------LNGEEQMAEQVEAEEEEEEEEDRQADEG 323
>TC204794 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
Length = 1037
Score = 29.6 bits (65), Expect = 1.2
Identities = 14/47 (29%), Positives = 27/47 (56%)
Frame = +1
Query: 37 DEAEEIVPDEDEEEEPKLELDLGPQFSLKEQLEKDKDDESLRKWKEQ 83
D E+ D+D +++ E D + EQ++K++ +E LRK ++Q
Sbjct: 445 DSDVEVKSDDDSDDDEDDEDDTEALLAELEQIKKERAEEKLRKERQQ 585
>TC229280 similar to UP|NK61_HUMAN (P78426) Homeobox protein Nkx-6.1, partial
(5%)
Length = 463
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 15 SFNAHLEEEHKNKGTNKVGVNYDE--AEEIVPDEDEEEEPKLELDLG 59
S N +LEEEH N +N +E AE++ +E+EEEE + D G
Sbjct: 182 SNNHNLEEEHSN-------LNGEEQMAEQVEAEEEEEEEEDRQADEG 301
>TC218919 homologue to UP|Q39892 (Q39892) Nucleosome assembly protein 1,
partial (33%)
Length = 729
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 37 DEAEEIVPDEDEEEEPKLELDLGPQFSLKEQLEKDKDDE 75
DE E++ DEDEEE+ + D E+ ++D+DDE
Sbjct: 172 DEFEDLEDDEDEEEDEDEDED--------EEYDEDEDDE 264
>TC215868 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (50%)
Length = 1472
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 17 NAHLEEEHKNKGTNKVGVNYDEAEEIVPDEDEEEEPKLELDLGPQFSLKEQLEKDKD--- 73
N H+EE+ ++ N +++E+ +++EEE+ + E D P+ + K + K +
Sbjct: 310 NDHVEEQEEDAPNNPEQSQPSDSKEVTDEDEEEEDEEEEED-KPKHAKKAKKNKGRSNTL 486
Query: 74 -DESLRK 79
DE ++K
Sbjct: 487 GDEVVKK 507
>TC217932 similar to UP|Q9LIH5 (Q9LIH5) Arabidopsis thaliana genomic DNA,
chromosome 3, TAC clone:K24M9, partial (7%)
Length = 947
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 29/47 (60%), Gaps = 2/47 (4%)
Frame = +1
Query: 32 VGVNYDEAEEIVPDEDE--EEEPKLELDLGPQFSLKEQLEKDKDDES 76
+GVN D+ +E++P+E + +++PK + GP L+ + D DE+
Sbjct: 688 IGVNKDDNKEVLPEERQKSKDDPKNTKESGP---LENMEQTDGPDEA 819
>TC222427
Length = 648
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/61 (27%), Positives = 31/61 (49%)
Frame = +1
Query: 49 EEEPKLELDLGPQFSLKEQLEKDKDDESLRKWKEQLLGNVDVSAVGEKIEPEVKIVSLTI 108
+E PK+ LG F K ++ +D+ L WK+QL ++ E ++ + IVS+
Sbjct: 109 KETPKVMKQLGRLFPNKVTIQLPQDEAILSDWKQQLERDI------ETMKAQSNIVSIRT 270
Query: 109 I 109
+
Sbjct: 271 V 273
>TC226274 similar to UP|Q8L5W5 (Q8L5W5) VERNALIZATION INDEPENDENCE 4, partial
(4%)
Length = 664
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 35 NYDEAEEI--VPDEDEEEEPKLELDLGPQFSLKEQLEKDKD 73
+Y+EAE++ DE+EEEEPK + + ++ E D+D
Sbjct: 547 HYEEAEQVNDASDEEEEEEPKQKNKEFRGSAKRKGFESDED 425
>TC207350 homologue to UP|Q40207 (Q40207) RAB1Y (Fragment), complete
Length = 912
Score = 28.1 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 102 KIVSLTIICQGRPDLILPIPFTADSKKSMFTLKEG 136
+++ T + +G P L+ P AD KKS FT + G
Sbjct: 654 RVLKRTFLRRGHPSLMHPQVVVADLKKSYFTQQPG 758
>TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (41%)
Length = 2064
Score = 28.1 bits (61), Expect = 3.6
Identities = 20/59 (33%), Positives = 28/59 (46%)
Frame = +1
Query: 28 GTNKVGVNYDEAEEIVPDEDEEEEPKLELDLGPQFSLKEQLEKDKDDESLRKWKEQLLG 86
G +V D AEE + DE+ E K EQ EK+++DE+ K KE+ G
Sbjct: 268 GNQEVEEEADAAEEKKEEIDEDGEEK-----------DEQEEKEEEDEAEEKEKEKAKG 411
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,010,786
Number of Sequences: 63676
Number of extensions: 101753
Number of successful extensions: 546
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of query: 235
length of database: 12,639,632
effective HSP length: 94
effective length of query: 141
effective length of database: 6,654,088
effective search space: 938226408
effective search space used: 938226408
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144644.6