TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144618.7 + phase: 0 /pseudo
         (1433 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ296988 similar to GP|21740616|em OSJNBb0089K24.12 {Oryza sativ...    77  7e-14
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara...    72  1e-12
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ...    42  0.002
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr...    31  3.4
BE607806 similar to GP|14597796|emb c_pp010010057r {Physcomitrel...    30  5.8
BG239196                                                               30  7.6

>BQ296988 similar to GP|21740616|em OSJNBb0089K24.12 {Oryza sativa (japonica
           cultivar-group)}, partial (1%)
          Length = 408

 Score = 76.6 bits (187), Expect = 7e-14
 Identities = 53/132 (40%), Positives = 70/132 (52%)
 Frame = -3

Query: 67  YADSLMDLEFSRFFNFSIYCFHGKRHGCVE*S*GTFCSR*FGSYF*TYARNLFFTTRFKI 126
           Y DS +D +    F+F I+ FHG R  CV  S   F +R*FGS F    R+L   +R+ I
Sbjct: 400 YVDS*LDSQLR*TFHFPIHRFHG*RFRCVARSERAFLTR*FGSCFRNSTRDLRSHSRYSI 221

Query: 127 CY*FLL*IESIMGRVRNLSTYA*L*LQNPMFL*SYAHC*EKSCSVICYAFSYWSQ*KFQH 186
           C  FL * ES +GR  NL   + L + + +FL*  A C   S    CYAF  W +   Q 
Sbjct: 220 CNYFLF**ESALGRT*NLHADSKLHMSSSLFL*CDASCSSSSSYASCYAFLDWFKR*IQC 41

Query: 187 GEVSDPSHGSSS 198
           G +SD S  +S+
Sbjct: 40  G*ISDSSD*TST 5


>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
            thaliana}, partial (18%)
          Length = 421

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 47/131 (35%), Positives = 73/131 (54%)
 Frame = -1

Query: 1069 EPIWFEASK*EMV*EVDIFIDSRRVYTVTIRLFTFHHSTRF*FYCLISICR*HYSCWFIY 1128
            E +W EASK*E+V*+ D F   RR++T+  RL   +   R  F+C + ICR*H+SC    
Sbjct: 418  ELVWVEASK*EVV*KAD*FASQRRLHTINFRLLPIYSHQRKYFHCTVGICR*HHSCR*FN 239

Query: 1129 H*IH*NQSYT*CSFQDQRFGNSKVFFRIRGCSFQRGDLYFSKKVLS*PIGFFWTFSF*TC 1188
             *I  +Q  +* SFQ+ + G  ++      CSF  G  + ++++LS     F      TC
Sbjct: 238  **I*QDQECS*FSFQN*KSG*VEILSWA*SCSF*TGYYHLTEEILSGSA*GFRITWVQTC 59

Query: 1189 FYSSGYFHQIA 1199
             ++S + H++A
Sbjct: 58   *HTS*HIHKVA 26


>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
          Length = 662

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
 Frame = +2

Query: 1275 TNPWLCRC*LGWLY*F*KINNRFLFLLRFIIDLMACKETSNYF*VILR--SRV*STFYWH 1332
            +N W+  C LG +Y*F ++N+  L L     +LM   ET + F +IL   S V*S+   H
Sbjct: 92   SNSWIQ*CRLGNMY*FKQVNHMVLLLSW*FSNLMES*ETKHCFPLILIL*S*V*SSHLHH 271

Query: 1333 M*TSVAAISLERFTSYLHQTTCVIL**SECNS-HSFQSSIS*EN*PFGNRLPSCQRK-GT 1390
            M  +VA +  +R   Y       IL* S+C +  + QS+IS      G+ LP C R+  T
Sbjct: 272  MRITVAYLPSKRSPCYFD-----IL*QSKCFAIAANQSNIS---WTIGD*LPHCSREDST 427

Query: 1391 KRNTKVASYIY*RTACRFPYKTSVTSKVQFFCIQAW 1426
            + +         ++  R  + +S+    Q   IQAW
Sbjct: 428  RIDALFTPCFLLQSVSRHLH*SSLAQTFQQQLIQAW 535


>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
            Hopscotch polyprotein, partial (7%)
          Length = 1446

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 22/54 (40%), Positives = 31/54 (56%)
 Frame = +1

Query: 1332 HM*TSVAAISLERFTSYLHQTTCVIL**SECNSHSFQSSIS*EN*PFGNRLPSC 1385
            HM*  +   +  R   + + T   +L**S   ++SFQSSIS*EN* + + L  C
Sbjct: 160  HM*AHLD*TTSSRIEVWKYSTNEAML**SGSPTYSFQSSIS*EN*TY*D*LSFC 321


>BE607806 similar to GP|14597796|emb c_pp010010057r {Physcomitrella patens},
           partial (12%)
          Length = 484

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
 Frame = +1

Query: 881 M*FFIC-------FCIRTKILRYSLPY----CIISFLCTSIIIPKVFFYVCHTMY* 925
           +*F +C        C+ T+IL+ S PY    C+ SF C+      +   +  TMY*
Sbjct: 253 L*FLVCKE*GIKVICLLTQILKSSRPYLYFCCVYSFFCSLQYFMTISMILASTMY* 420


>BG239196 
          Length = 405

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 1015 HSENFTCHSFNQKLAFTSVGCK*CFSTW*FARECL 1049
            HS+  +C   N  LAF  + C   FSTW    EC+
Sbjct: 242  HSKTHSCSQTNWLLAFQIIACSVMFSTW----ECM 334


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.380    0.168    0.727 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,326,234
Number of Sequences: 63676
Number of extensions: 1427974
Number of successful extensions: 24771
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7317
Number of HSP's successfully gapped in prelim test: 887
Number of HSP's that attempted gapping in prelim test: 16451
Number of HSP's gapped (non-prelim): 10275
length of query: 1433
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1324
effective length of database: 5,698,948
effective search space: 7545407152
effective search space used: 7545407152
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.8 bits)
S2: 65 (29.6 bits)