BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144617.6 - phase: 0
(178 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC235083 similar to UP|Q9LH82 (Q9LH82) Similarity to AAA-type AT... 171 2e-43
CO985072 162 6e-41
TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein... 122 1e-28
BM085501 similar to GP|9759053|dbj AAA-type ATPase-like protein ... 105 1e-23
TC218933 similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like prot... 102 1e-22
TC212951 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein... 101 2e-22
CA801759 similar to GP|9294272|dbj mitochondrial protein-like {A... 97 5e-21
TC210693 weakly similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-li... 82 1e-16
BF425036 weakly similar to GP|9294274|dbj| mitochondrial protein... 80 4e-16
TC211748 similar to GB|AAN28905.1|23506091|AY143966 At2g46620/F1... 75 2e-14
TC233391 similar to UP|Q9LJJ8 (Q9LJJ8) Mitochondrial protein-lik... 69 1e-12
BQ742690 similar to GP|9294272|dbj mitochondrial protein-like {A... 68 3e-12
BG509352 weakly similar to GP|18700084|gb At2g46620/F13A10.15 {A... 67 6e-12
CO978630 65 1e-11
TC213435 similar to UP|Q9FKM3 (Q9FKM3) Similarity to AAA-type AT... 60 4e-10
BI315909 similar to GP|18086343|gb AT3g50930/F18B3_210 {Arabidop... 60 7e-10
AW101753 47 6e-06
TC227995 homologue to UP|PRSA_BRACM (O23894) 26S protease regula... 39 0.001
TC227996 homologue to UP|PRSA_BRACM (O23894) 26S protease regula... 39 0.001
TC228292 homologue to UP|Q9FXT8 (Q9FXT8) 26S proteasome regulato... 35 0.014
>TC235083 similar to UP|Q9LH82 (Q9LH82) Similarity to AAA-type ATPase,
partial (24%)
Length = 724
Score = 171 bits (432), Expect = 2e-43
Identities = 90/167 (53%), Positives = 115/167 (67%)
Frame = +3
Query: 2 EKKESQAENATKNNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGR 61
E K+ ++ + NK S++TL GLLNFIDGIWSA GER+IIFTTN+ +KLD ALI GR
Sbjct: 66 EPKDPSKKDEEEGNKNSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVDKLDPALIRTGR 245
Query: 62 MDMLIELPYCCFDGFKMLATKYLSLESHFLFDKIACLLVETNMTPADVAENLMPKVDNED 121
MD IEL YC F+ FK+LA YL ++SH+LF +IA LL TN+TPAD+AENLMPK NED
Sbjct: 246 MDKHIELSYCRFEAFKVLAKNYLDVDSHYLFARIANLLEVTNVTPADIAENLMPKCLNED 425
Query: 122 VATPLLRLIQALRSIEEEAEKEEGTSAKQESDGEDSSAEKKEDAEMV 168
V + LL LIQ+L E E+EE +++ GE + E K + V
Sbjct: 426 VESCLLNLIQSLDKKVAEEEEEEAGLNEEKVKGEPTQQENKNNGHSV 566
>CO985072
Length = 839
Score = 162 bits (411), Expect = 6e-41
Identities = 86/158 (54%), Positives = 112/158 (70%)
Frame = -3
Query: 9 ENATKNNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGRMDMLIEL 68
E+ +++ S++TL GLLN IDGIWSA GER+++FTTN+ EKLD ALI RGRMD IEL
Sbjct: 639 EDDDDDDRGSKVTLSGLLNVIDGIWSACGGERIMVFTTNFVEKLDPALIRRGRMDKHIEL 460
Query: 69 PYCCFDGFKMLATKYLSLESHFLFDKIACLLVETNMTPADVAENLMPKVDNEDVATPLLR 128
YCC++ FK+LA YL LESH LF KI LL ET MTPADVAENLMPK +E+V T L
Sbjct: 459 SYCCYEAFKVLAQNYLGLESHQLFPKIEKLLEETKMTPADVAENLMPKSLDEEVDTCLHN 280
Query: 129 LIQALRSIEEEAEKEEGTSAKQESDGEDSSAEKKEDAE 166
LIQAL + + EK++ + +++S+ + +S E E
Sbjct: 279 LIQALERSKVDLEKKKAETERKQSNVQKTSENHGEGME 166
>TC231542 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein, partial
(34%)
Length = 1025
Score = 122 bits (305), Expect = 1e-28
Identities = 66/157 (42%), Positives = 100/157 (63%)
Frame = +1
Query: 4 KESQAENATKNNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGRMD 63
+ ++A A+ +N Q+TL GLLNFIDG+WS+ ER+I+FTTN+ +KLD AL+ GRMD
Sbjct: 265 RRAEARAASGHNNDRQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMD 444
Query: 64 MLIELPYCCFDGFKMLATKYLSLESHFLFDKIACLLVETNMTPADVAENLMPKVDNEDVA 123
+ I + YC GF+ LA+ YL ++ H LF+KI + +T +TPA+VAE L+ + +
Sbjct: 445 VHIHMSYCTPCGFRQLASNYLGIKEHSLFEKIEEEMQKTQVTPAEVAEQLL---KSSHIE 615
Query: 124 TPLLRLIQALRSIEEEAEKEEGTSAKQESDGEDSSAE 160
T L +LI +R ++E +K E +QE+ E E
Sbjct: 616 TSLEQLIDFMRK-KKETQKLEAKKKEQEAKEEQQRKE 723
>BM085501 similar to GP|9759053|dbj AAA-type ATPase-like protein {Arabidopsis
thaliana}, partial (21%)
Length = 421
Score = 105 bits (262), Expect = 1e-23
Identities = 61/141 (43%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Frame = +3
Query: 19 QITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGRMDMLIELPYCCFDGFKM 78
Q++L GLLNFIDG+WS+ ER+II TTN+ E+LD AL+ GRMDM I + YC + GFK+
Sbjct: 27 QLSLCGLLNFIDGLWSSCGDERIIILTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFKV 206
Query: 79 LATKYLSL-ESHFLFDKIACLLVETNMTPADVAENLMPKVDNEDVATPLLRLIQALRSIE 137
LA+ YL + H L +I L+ + +TPA VAE LM D + L+L+
Sbjct: 207 LASNYLDIAPDHRLVGEIEGLIEDMQITPAQVAEELMKSEDADTALEGFLKLL------- 365
Query: 138 EEAEKEEGTSAKQESDGEDSS 158
+ +K EG E+DG D +
Sbjct: 366 -KRKKMEGDVC--ENDGSDKT 419
>TC218933 similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like protein, partial
(21%)
Length = 803
Score = 102 bits (253), Expect = 1e-22
Identities = 60/137 (43%), Positives = 81/137 (58%), Gaps = 2/137 (1%)
Frame = +3
Query: 27 NFIDGIWSASTGERLIIFTTNYAEKLDHALICRGRMDMLIELPYCCFDGFKMLATKYLSL 86
NFIDG+WS+ ER+IIFTTN+ E+LD AL+ GRMDM I + YC + GFK+LA+ YL
Sbjct: 3 NFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKILASNYLET 182
Query: 87 ES-HFLFDKIACLLVETNMTPADVAENLMPKVDNEDVATPLLRLIQALRSIEEEAEK-EE 144
S H LF ++ L+ + +TPA VAE LM NED L ++ L+ + E + E
Sbjct: 183 PSDHPLFGEVEGLIEDIQITPAQVAEELM---KNEDPEATLEGFVKLLKRKKMEGDVCEN 353
Query: 145 GTSAKQESDGEDSSAEK 161
T K E + S K
Sbjct: 354 STPDKAEPTHQQSKRRK 404
>TC212951 similar to UP|Q8LBK2 (Q8LBK2) BCS1 protein-like protein, partial
(26%)
Length = 808
Score = 101 bits (252), Expect = 2e-22
Identities = 57/125 (45%), Positives = 81/125 (64%)
Frame = +1
Query: 16 KMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGRMDMLIELPYCCFDG 75
K + TL GLLN +DG+WS+ ER+IIFTTN+ E++D AL+ GRMDM I L +
Sbjct: 259 KPYRFTLSGLLNNMDGLWSSGGEERIIIFTTNHRERIDPALLRPGRMDMHIHLSFLKGKA 438
Query: 76 FKMLATKYLSLESHFLFDKIACLLVETNMTPADVAENLMPKVDNEDVATPLLRLIQALRS 135
F++LA+ YL +E H LF++I LL + +TPA VAE LM NED L L++ L+
Sbjct: 439 FRVLASNYLGIEDHSLFEEIDGLLEKLEVTPAVVAEQLM---RNEDPEVALEGLVEFLKE 609
Query: 136 IEEEA 140
++E+
Sbjct: 610 KDKES 624
>CA801759 similar to GP|9294272|dbj mitochondrial protein-like {Arabidopsis
thaliana}, partial (26%)
Length = 450
Score = 96.7 bits (239), Expect = 5e-21
Identities = 45/71 (63%), Positives = 55/71 (77%)
Frame = +3
Query: 2 EKKESQAENATKNNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGR 61
E+K+ N +++K S++TL GLLNFIDGIWSA GER+I+FTTNY EKLD ALI RGR
Sbjct: 237 EQKDPMRRNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIVFTTNYVEKLDPALIRRGR 416
Query: 62 MDMLIELPYCC 72
MD IE+ YCC
Sbjct: 417 MDKHIEMSYCC 449
>TC210693 weakly similar to UP|Q9FN78 (Q9FN78) AAA-type ATPase-like protein,
partial (18%)
Length = 520
Score = 82.0 bits (201), Expect = 1e-16
Identities = 42/91 (46%), Positives = 57/91 (62%)
Frame = +1
Query: 40 RLIIFTTNYAEKLDHALICRGRMDMLIELPYCCFDGFKMLATKYLSLESHFLFDKIACLL 99
R+I+FTTN+ KLD AL+ GRMD+ I++ YC GFKMLA YL + H LF ++ LL
Sbjct: 1 RIIVFTTNHKNKLDPALLRPGRMDVHIDMTYCTPCGFKMLAFNYLGITEHPLFVEVETLL 180
Query: 100 VETNMTPADVAENLMPKVDNEDVATPLLRLI 130
TN+TPA+V E + D E L+ L+
Sbjct: 181 KTTNVTPAEVGEQFLKNEDPEIALESLMELL 273
>BF425036 weakly similar to GP|9294274|dbj| mitochondrial protein-like
{Arabidopsis thaliana}, partial (15%)
Length = 416
Score = 80.5 bits (197), Expect = 4e-16
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = -2
Query: 19 QITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGRMDMLIELPYCCFDGFKM 78
++TL GLLNF DG+WS ER+++FTTN+ + +D AL+ GRMD+ + L C F+
Sbjct: 415 RVTLSGLLNFTDGLWSCCGEERIVVFTTNHRDSVDPALVRCGRMDVHVSLATCGAHAFRE 236
Query: 79 LATKYLSLESHFLFDKI 95
LA YL LESH LF +
Sbjct: 235 LARNYLGLESHVLFQAV 185
>TC211748 similar to GB|AAN28905.1|23506091|AY143966 At2g46620/F13A10.15
{Arabidopsis thaliana;} , partial (22%)
Length = 786
Score = 74.7 bits (182), Expect = 2e-14
Identities = 47/164 (28%), Positives = 83/164 (49%), Gaps = 7/164 (4%)
Frame = +2
Query: 12 TKNNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYA-EKLDHALICRGRMDMLIELPY 70
T+ +K + +L +LNF+DGI S ER+++FT N E++D A++ GR+D+ I P
Sbjct: 14 TEKSKSNTTSLSSVLNFMDGIVSCCGEERVMVFTMNETKEEVDQAVLRPGRIDVHIHFPL 193
Query: 71 CCFDGFKMLATKYLSLESHFLFDKI-ACLLVETNMTPADVAENLMPKVDNEDVATPLLRL 129
C F FK+LA+ YL L+ H LF ++ ++PA++ E + + N + T L+
Sbjct: 194 CDFSTFKILASSYLGLKEHKLFPQVEEVFQTGARLSPAELGEIM---ISNRNSPTRALKT 364
Query: 130 IQALRSIEEEAEKE-----EGTSAKQESDGEDSSAEKKEDAEMV 168
+ + ++ +E S + D E + +E V
Sbjct: 365 VISALQVQSNGPREGQRLSHSGSGRNSDDNEPGAVICRESVHTV 496
>TC233391 similar to UP|Q9LJJ8 (Q9LJJ8) Mitochondrial protein-like, partial
(10%)
Length = 568
Score = 68.9 bits (167), Expect = 1e-12
Identities = 36/73 (49%), Positives = 49/73 (66%)
Frame = +1
Query: 70 YCCFDGFKMLATKYLSLESHFLFDKIACLLVETNMTPADVAENLMPKVDNEDVATPLLRL 129
YC ++ FK+LA YL++ESH LF +I LL ET +TPA+VAE+LMPK D L L
Sbjct: 10 YCGYEAFKLLARNYLNIESHNLFGRICELLKETKITPAEVAEHLMPKNAFRDADLYLKSL 189
Query: 130 IQALRSIEEEAEK 142
IQAL +E +++
Sbjct: 190 IQALELAKERSKE 228
>BQ742690 similar to GP|9294272|dbj mitochondrial protein-like {Arabidopsis
thaliana}, partial (24%)
Length = 405
Score = 67.8 bits (164), Expect = 3e-12
Identities = 31/52 (59%), Positives = 39/52 (74%)
Frame = +2
Query: 2 EKKESQAENATKNNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLD 53
++++ Q + K SQ+TL GLLNFIDG+WSA GERLI+FTTNY EKLD
Sbjct: 248 DQRQKQQGMQEREVKSSQVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 403
>BG509352 weakly similar to GP|18700084|gb At2g46620/F13A10.15 {Arabidopsis
thaliana}, partial (30%)
Length = 436
Score = 66.6 bits (161), Expect = 6e-12
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Frame = +1
Query: 5 ESQAENATKNNKMSQITLPGLLNFIDGIWSASTGE-RLIIFTTNYAEKLDHALICRGRMD 63
E + E AT +T G+ +F+DGI SA GE R+++FT N E +D L+ GR+D
Sbjct: 112 EPEPETATA------VTASGIQSFMDGIVSACCGEERVMVFTMNSKECVDPDLLRPGRVD 273
Query: 64 MLIELPYCCFDGFKMLATKYLSLESHFLFDKIACLLVE-TNMTPADVAE 111
+ I P C F FK LA+ YL + H LF ++ + ++PA+++E
Sbjct: 274 VHIHFPVCDFSAFKTLASSYLGVRKHKLFAQVEEIFRHGATLSPAEISE 420
>CO978630
Length = 660
Score = 65.5 bits (158), Expect = 1e-11
Identities = 46/153 (30%), Positives = 75/153 (48%), Gaps = 4/153 (2%)
Frame = -1
Query: 19 QITLPGLLNFIDGIW-SASTGERLIIFTTNYAEKLDHALICRGRMDMLIELPYCCFDGFK 77
+I+ G+LNF+D + S ER+++FT N E +D L+ GR+D+ I P C F FK
Sbjct: 657 EISASGILNFMDALLTSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFK 478
Query: 78 MLATKYLSLESHFLFDKIACLLVE-TNMTPADVAENLMPKVDNEDVATPLLRLIQALRSI 136
LA+ YL ++ H LF ++ + +++PA++ E L+ A R+
Sbjct: 477 TLASSYLGVKEHKLFPQVQEIFQNGASLSPAEIGE-----------------LMIANRNS 349
Query: 137 EEEAEKEEGTSAKQESDGEDSS--AEKKEDAEM 167
A K T+ + + DG + ED EM
Sbjct: 348 PSRAIKSVITALQTDGDGRGCGLIGRQTEDDEM 250
>TC213435 similar to UP|Q9FKM3 (Q9FKM3) Similarity to AAA-type ATPase,
partial (19%)
Length = 524
Score = 60.5 bits (145), Expect = 4e-10
Identities = 48/138 (34%), Positives = 68/138 (48%), Gaps = 22/138 (15%)
Frame = +1
Query: 53 DHALICRGRMDMLIELPYCCFDGFKMLATKYLSLESHFLFDKIACLLVE----TNMTPAD 108
D AL+ GRMDM I + YC F K+L YL E L + I L E MTPAD
Sbjct: 1 DPALLRSGRMDMHIFMSYCSFPALKILLKNYLGCEECELEEPILKRLEEVVDVARMTPAD 180
Query: 109 VAENL------MPKVDNEDVATPLLR--------LIQALRSIEEEAEKE----EGTSAKQ 150
++E L + K E + T LR +++ +EEE E+E + S KQ
Sbjct: 181 ISEVLIKNRRKIEKAVEELLETLKLRAEMNEKNGVLRVTNGVEEEEEQEKRALDSESPKQ 360
Query: 151 ESDGEDSSAEKKEDAEMV 168
ES+ ED+ E++E+ E +
Sbjct: 361 ESEIEDNCKEEEEEEEKI 414
>BI315909 similar to GP|18086343|gb AT3g50930/F18B3_210 {Arabidopsis
thaliana}, partial (19%)
Length = 417
Score = 59.7 bits (143), Expect = 7e-10
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +2
Query: 14 NNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGR 61
+N Q+TL G LNFIDG+WS+ ER+I+FTTN+ KLD AL+ GR
Sbjct: 272 DNPKPQVTLSGFLNFIDGLWSSCGDERIIVFTTNHKNKLDPALLRPGR 415
>AW101753
Length = 341
Score = 46.6 bits (109), Expect = 6e-06
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 4 KESQAENATKNNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAE 50
+ S + T + ++TL GLLNF DG+WS ER+++FTTN+ +
Sbjct: 197 RSSNKKGQTGCEESGRVTLSGLLNFTDGLWSCCGEERIVVFTTNHRD 337
>TC227995 homologue to UP|PRSA_BRACM (O23894) 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1),
partial (32%)
Length = 673
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/68 (36%), Positives = 39/68 (56%), Gaps = 1/68 (1%)
Frame = +1
Query: 9 ENATKNNKMSQITLPGLLNFIDGIWSASTGERL-IIFTTNYAEKLDHALICRGRMDMLIE 67
++ ++ Q T+ LLN +DG S+ +R+ +I TN A+ LD AL+C GR+D IE
Sbjct: 40 DSEVSGDRELQRTMLELLNQLDGF---SSDDRVKVIAATNRADILDPALMCSGRLD*KIE 210
Query: 68 LPYCCFDG 75
P+ G
Sbjct: 211 FPHPTLTG 234
>TC227996 homologue to UP|PRSA_BRACM (O23894) 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1),
partial (54%)
Length = 1240
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 9 ENATKNNKMSQITLPGLLNFIDGIWSASTGERL-IIFTTNYAEKLDHALICRGRMDMLIE 67
++ ++ Q T+ LLN +DG S+ +R+ +I TN A+ LD AL+C GR+D IE
Sbjct: 564 DSEVSGDRELQRTMLELLNQLDGF---SSDDRVKVIAATNRADILDPALMCSGRLD*KIE 734
Query: 68 LPY 70
P+
Sbjct: 735 FPH 743
>TC228292 homologue to UP|Q9FXT8 (Q9FXT8) 26S proteasome regulatory particle
triple-A ATPase subunit4, partial (37%)
Length = 451
Score = 35.4 bits (80), Expect = 0.014
Identities = 23/58 (39%), Positives = 32/58 (54%)
Frame = +3
Query: 12 TKNNKMSQITLPGLLNFIDGIWSASTGERLIIFTTNYAEKLDHALICRGRMDMLIELP 69
T ++ Q TL LLN +DG G+ +I TN + LD AL+ GR+D IE+P
Sbjct: 162 TSADREIQRTLMELLNQLDGF--DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIP 329
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.130 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,362,744
Number of Sequences: 63676
Number of extensions: 81285
Number of successful extensions: 427
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of query: 178
length of database: 12,639,632
effective HSP length: 91
effective length of query: 87
effective length of database: 6,845,116
effective search space: 595525092
effective search space used: 595525092
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC144617.6