BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144592.7 + phase: 0
(129 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229604 similar to UP|Q9M276 (Q9M276) Homeobox-leucine zipper p... 174 1e-44
TC207149 similar to UP|Q9XH73 (Q9XH73) Homeobox leucine zipper p... 145 4e-36
TC226629 homologue to UP|Q93XA3 (Q93XA3) Homeodomain leucine zip... 112 6e-26
TC215189 similar to UP|Q39941 (Q39941) HAHB-1, partial (70%) 108 7e-25
TC214581 similar to UP|Q43427 (Q43427) DNA-binding protein, part... 108 7e-25
TC230088 UP|Q9SP47 (Q9SP47) Homeodomain-leucine zipper protein 5... 107 2e-24
TC215843 similar to UP|Q43429 (Q43429) DNA-binding protein (Frag... 106 3e-24
TC215844 UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein 5... 105 6e-24
TC204347 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zip... 104 1e-23
TC204554 similar to UP|Q43427 (Q43427) DNA-binding protein, part... 103 2e-23
TC215194 similar to UP|Q39941 (Q39941) HAHB-1, partial (56%) 102 4e-23
TC204553 similar to UP|Q93XA4 (Q93XA4) Homeodomain leucine zippe... 102 6e-23
TC204555 weakly similar to UP|Q43427 (Q43427) DNA-binding protei... 101 1e-22
TC221369 similar to UP|Q9FN29 (Q9FN29) Arabidopsis thaliana geno... 92 9e-20
BE660082 85 8e-18
TC231420 weakly similar to UP|HXB4_HUMAN (P17483) Homeobox prote... 83 4e-17
BE803558 weakly similar to PIR|T07734|T07 homeotic protein VAHOX... 82 5e-17
TC230733 homologue to UP|Q9SP47 (Q9SP47) Homeodomain-leucine zip... 80 3e-16
TC204350 similar to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zippe... 70 4e-13
TC205129 homologue to UP|HT22_ARATH (P46604) Homeobox-leucine zi... 70 4e-13
>TC229604 similar to UP|Q9M276 (Q9M276) Homeobox-leucine zipper protein
ATHB-12, partial (44%)
Length = 992
Score = 174 bits (441), Expect = 1e-44
Identities = 90/123 (73%), Positives = 105/123 (85%), Gaps = 3/123 (2%)
Frame = +2
Query: 4 SQYSSYSAEAG-EEETYTTSSISSMRKKK--NKNTKRFTDEQIKSLETMFETETRLEPRK 60
S Y+ AG E ET+T+SS + R KK N NT+RF+DEQIKSLETMFE+ETRLEPRK
Sbjct: 134 SHNMEYTYSAGVEAETHTSSSTTPSRSKKRNNNNTRRFSDEQIKSLETMFESETRLEPRK 313
Query: 61 KLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLL 120
KLQLARELGLQPRQVAIWFQNKRARWKSKQLER+Y LQ++YN LAS+FE++KKE+QTLL
Sbjct: 314 KLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNTLASRFEALKKEKQTLL 493
Query: 121 IQV 123
IQ+
Sbjct: 494 IQL 502
>TC207149 similar to UP|Q9XH73 (Q9XH73) Homeobox leucine zipper protein,
partial (42%)
Length = 873
Score = 145 bits (367), Expect = 4e-36
Identities = 68/123 (55%), Positives = 98/123 (79%)
Frame = +2
Query: 1 MEYSQYSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRK 60
ME + S++ E++ S + KK +N +RF+DEQI+SLE +FE+E++LEPRK
Sbjct: 362 MEGDENIQASSKGKYVESFNCSEAPRKKSKKIENKRRFSDEQIRSLECIFESESKLEPRK 541
Query: 61 KLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLL 120
K+QLAR+LGLQPRQVAIWFQN+RARWKSK++E+EY KL++ Y+NLAS+FES+KKE+ +L
Sbjct: 542 KMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKDSLQ 721
Query: 121 IQV 123
+++
Sbjct: 722 LEL 730
>TC226629 homologue to UP|Q93XA3 (Q93XA3) Homeodomain leucine zipper protein
HDZ3 (Fragment), partial (96%)
Length = 975
Score = 112 bits (279), Expect = 6e-26
Identities = 51/98 (52%), Positives = 74/98 (75%)
Frame = +3
Query: 29 KKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKS 88
K+ + R + EQ+ LE FE E +LEP +K QLA++LGLQPRQVA+WFQN+RARWK+
Sbjct: 72 KQSPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKT 251
Query: 89 KQLEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
KQLER+Y+ L++SY+ L S ++S+ KE + L +V+S+
Sbjct: 252 KQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSL 365
>TC215189 similar to UP|Q39941 (Q39941) HAHB-1, partial (70%)
Length = 1315
Score = 108 bits (270), Expect = 7e-25
Identities = 51/119 (42%), Positives = 77/119 (63%)
Frame = +3
Query: 8 SYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARE 67
S E GEE +S + + +R EQ+K+LE FE +LEP +K+QLAR
Sbjct: 384 SSGIEHGEEANNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARA 563
Query: 68 LGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
LGLQPRQ+AIWFQN+RARWK+KQLE++Y+ L+ Y + S ++++ + Q L ++L++
Sbjct: 564 LGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEILAL 740
>TC214581 similar to UP|Q43427 (Q43427) DNA-binding protein, partial (54%)
Length = 1605
Score = 108 bits (270), Expect = 7e-25
Identities = 47/93 (50%), Positives = 72/93 (76%)
Frame = +2
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
+R + EQ+K LE F+ E +LEP +K+ LA+ELGLQPRQVAIWFQN+RARWK+KQ+E++Y
Sbjct: 587 RRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWKTKQMEKDY 766
Query: 96 NKLQNSYNNLASKFESMKKERQTLLIQVLSIVQ 128
+ LQ SYN+L + ++++ +E+ L +V + +
Sbjct: 767 DSLQASYNDLKANYDNLLREKDKLKAEVARLTE 865
>TC230088 UP|Q9SP47 (Q9SP47) Homeodomain-leucine zipper protein 57, complete
Length = 1105
Score = 107 bits (267), Expect = 2e-24
Identities = 51/91 (56%), Positives = 70/91 (76%)
Frame = +1
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
+R T EQ++ LE FE E +LEP +K+QLA+ELGLQPRQVAIWFQN+RAR+K+KQLE++Y
Sbjct: 235 RRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDY 414
Query: 96 NKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
L+ SY+ L S +ES+ +E L +V S+
Sbjct: 415 GVLKASYDRLKSDYESLVQENDKLKAEVNSL 507
>TC215843 similar to UP|Q43429 (Q43429) DNA-binding protein (Fragment),
complete
Length = 825
Score = 106 bits (264), Expect = 3e-24
Identities = 46/92 (50%), Positives = 72/92 (78%)
Frame = +2
Query: 32 NKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQL 91
++ +R +Q+K+LE FE E +LEP +K++LA+ELGLQPRQVA+WFQN+RARWK+KQL
Sbjct: 518 SEKKRRLNVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 697
Query: 92 EREYNKLQNSYNNLASKFESMKKERQTLLIQV 123
ER+Y L+ +Y +L F++++++ + LL Q+
Sbjct: 698 ERDYGVLKANYGSLKLNFDTLQQDNEALLKQI 793
>TC215844 UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein 56, complete
Length = 1482
Score = 105 bits (262), Expect = 6e-24
Identities = 45/92 (48%), Positives = 73/92 (78%)
Frame = +1
Query: 32 NKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQL 91
++ +R + +Q+K+LE FE E +LEP +KL+LA+ELGLQPRQVA+WFQN+RARWK+KQL
Sbjct: 262 SEKKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWKTKQL 441
Query: 92 EREYNKLQNSYNNLASKFESMKKERQTLLIQV 123
ER+Y L+ +Y +L +++++++ + LL ++
Sbjct: 442 ERDYGVLKANYESLKLNYDTLQQDHEALLKEI 537
>TC204347 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein
56, partial (71%)
Length = 2071
Score = 104 bits (259), Expect = 1e-23
Identities = 46/93 (49%), Positives = 72/93 (76%)
Frame = +1
Query: 31 KNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQ 90
+++ +R + +Q+K+LE FE E +LEP +K++LA+ELGLQPRQVA+WFQN+RARWK+KQ
Sbjct: 769 QSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 948
Query: 91 LEREYNKLQNSYNNLASKFESMKKERQTLLIQV 123
LER+Y L+ +Y+ L F+++ ++ + L QV
Sbjct: 949 LERDYGVLKANYDALKLNFDTLDQDNEALRKQV 1047
>TC204554 similar to UP|Q43427 (Q43427) DNA-binding protein, partial (40%)
Length = 1092
Score = 103 bits (257), Expect = 2e-23
Identities = 47/96 (48%), Positives = 69/96 (70%)
Frame = +3
Query: 31 KNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQ 90
K + +R + Q++ LE FE E +LEP +K +LA++LGL+PRQVAIWFQN+RARWK+K
Sbjct: 513 KPEKKRRLSMNQVQFLEKSFEEENKLEPERKTKLAKDLGLRPRQVAIWFQNRRARWKTKT 692
Query: 91 LEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
LE++Y L S+ NL S ++S+ KE+ L +V S+
Sbjct: 693 LEKDYEALHASFENLKSNYDSLLKEKDNLKAEVASL 800
>TC215194 similar to UP|Q39941 (Q39941) HAHB-1, partial (56%)
Length = 1060
Score = 102 bits (255), Expect = 4e-23
Identities = 50/115 (43%), Positives = 76/115 (65%)
Frame = +2
Query: 12 EAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQ 71
E GEE S + + K +R EQ+K+LE FE +LEP +K+QLAR LGLQ
Sbjct: 161 ELGEEANAEEDSDDGSQAGEKK--RRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQ 334
Query: 72 PRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
PRQ+AIWFQN+RARWK+KQLE++Y+ L+ Y + + ++++ + Q L ++L++
Sbjct: 335 PRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQFQNQKLQTEILAL 499
>TC204553 similar to UP|Q93XA4 (Q93XA4) Homeodomain leucine zipper protein
HDZ2, partial (49%)
Length = 1502
Score = 102 bits (253), Expect = 6e-23
Identities = 46/93 (49%), Positives = 67/93 (71%)
Frame = +1
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
+R + Q++ LE FE E +LEP +K +LA++LGLQPRQVAIWFQN RARWK+KQLE++Y
Sbjct: 535 RRLSASQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNHRARWKNKQLEKDY 714
Query: 96 NKLQNSYNNLASKFESMKKERQTLLIQVLSIVQ 128
L S+ +L S ++ + KE+ L +V S+ +
Sbjct: 715 ETLHASFESLKSNYDCLLKEKDKLKAEVASLTE 813
>TC204555 weakly similar to UP|Q43427 (Q43427) DNA-binding protein, partial
(51%)
Length = 1275
Score = 101 bits (251), Expect = 1e-22
Identities = 45/86 (52%), Positives = 65/86 (75%)
Frame = +1
Query: 41 EQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQN 100
+Q++ LE FE E +LEP +K +LA++LGL+PRQVAIWFQN+RARWK+K LE++Y L
Sbjct: 1 DQVQFLEKSFEEENKLEPERKTKLAKDLGLRPRQVAIWFQNRRARWKTKTLEKDYEALHA 180
Query: 101 SYNNLASKFESMKKERQTLLIQVLSI 126
S+ NL S ++S+ KE+ L +V S+
Sbjct: 181 SFENLKSNYDSLLKEKDNLKAEVASL 258
>TC221369 similar to UP|Q9FN29 (Q9FN29) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K19P17, partial (43%)
Length = 812
Score = 91.7 bits (226), Expect = 9e-20
Identities = 42/92 (45%), Positives = 62/92 (66%)
Frame = +1
Query: 28 RKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 87
R K N N KR T++Q+ LE F + +LEP +K LA +LGL PRQVAIW+QNKRARWK
Sbjct: 136 RAKHNNNKKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWK 315
Query: 88 SKQLEREYNKLQNSYNNLASKFESMKKERQTL 119
++ LE ++ LQ N+ ++ + ++K+ + L
Sbjct: 316 TQSLEVDHGVLQARLENVVAEKKQLEKDVERL 411
>BE660082
Length = 846
Score = 85.1 bits (209), Expect = 8e-18
Identities = 52/127 (40%), Positives = 73/127 (56%), Gaps = 10/127 (7%)
Frame = +2
Query: 6 YSSYSAEAGEEETYTTSSISSMRKKKNK---------NTKR-FTDEQIKSLETMFETETR 55
Y+ A+ G+ T R KKNK N KR +D+Q+ LE F E +
Sbjct: 167 YTQIIAQQGD-----TKKPRRRRNKKNKGGENAASEANKKRKLSDDQVNLLEQNFGNEHK 331
Query: 56 LEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKE 115
LE +K +LA ELGL PRQVA+WFQN+RARWK+K+LE EY+ L+ N+ A+ E + E
Sbjct: 332 LESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKK--NHEATLLEKCRLE 505
Query: 116 RQTLLIQ 122
+ L ++
Sbjct: 506 TEVLKLK 526
>TC231420 weakly similar to UP|HXB4_HUMAN (P17483) Homeobox protein Hox-B4
(Hox-2F) (Hox-2.6), partial (11%)
Length = 513
Score = 82.8 bits (203), Expect = 4e-17
Identities = 37/77 (48%), Positives = 55/77 (71%)
Frame = +1
Query: 50 FETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKF 109
F+ +LEP +K+QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+EY L+ + + +
Sbjct: 7 FDQGNKLEPERKVQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADN 186
Query: 110 ESMKKERQTLLIQVLSI 126
+ +K Q L ++ ++
Sbjct: 187 DVLKVRNQKLQAELQAV 237
>BE803558 weakly similar to PIR|T07734|T07 homeotic protein VAHOX1 - tomato,
partial (31%)
Length = 541
Score = 82.4 bits (202), Expect = 5e-17
Identities = 41/97 (42%), Positives = 66/97 (67%)
Frame = +2
Query: 32 NKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQL 91
+KN K + Q+K LE + E +L P +K+ LA EL LQP QVAI +N+RARWK+KQ+
Sbjct: 38 DKNLK-LSVNQVKFLEKSSDEENKL*PLRKISLAPELRLQPTQVAIEDKNRRARWKTKQM 214
Query: 92 EREYNKLQNSYNNLASKFESMKKERQTLLIQVLSIVQ 128
E++Y+ LQ SYN+L + ++++ +E+ L +V + +
Sbjct: 215 EKDYDSLQTSYNDLKANYDNLLREKDKLKAEVARLTE 325
>TC230733 homologue to UP|Q9SP47 (Q9SP47) Homeodomain-leucine zipper protein
57, partial (76%)
Length = 1305
Score = 79.7 bits (195), Expect = 3e-16
Identities = 38/66 (57%), Positives = 51/66 (76%)
Frame = +3
Query: 61 KLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLL 120
K+QLA+ELGLQPRQVAIWFQN+RAR+K+KQLE++Y L+ SY+ L +ES+ +E L
Sbjct: 3 KVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKGDYESLVQENDKLK 182
Query: 121 IQVLSI 126
+V I
Sbjct: 183 AEVKRI 200
>TC204350 similar to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein
56, partial (44%)
Length = 1197
Score = 69.7 bits (169), Expect = 4e-13
Identities = 30/56 (53%), Positives = 43/56 (76%)
Frame = +3
Query: 68 LGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQV 123
LGLQPRQVA+WFQN+RARWK+KQLER+Y L+ +Y+ L F ++ ++ + L Q+
Sbjct: 3 LGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFGTLNQDNEALRKQI 170
>TC205129 homologue to UP|HT22_ARATH (P46604) Homeobox-leucine zipper protein
HAT22 (HD-ZIP protein 22), partial (47%)
Length = 793
Score = 69.7 bits (169), Expect = 4e-13
Identities = 37/83 (44%), Positives = 49/83 (58%)
Frame = +3
Query: 37 RFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYN 96
R T EQ LE F+ + L P++K LAR+L L+PRQV +WFQN+RAR K KQ E +
Sbjct: 144 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCE 323
Query: 97 KLQNSYNNLASKFESMKKERQTL 119
L+ L + +KKE Q L
Sbjct: 324 FLKKCCETLTDENRRLKKELQEL 392
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.123 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,115,971
Number of Sequences: 63676
Number of extensions: 39152
Number of successful extensions: 342
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of query: 129
length of database: 12,639,632
effective HSP length: 86
effective length of query: 43
effective length of database: 7,163,496
effective search space: 308030328
effective search space used: 308030328
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC144592.7