BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144564.17 - phase: 0
(559 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229250 similar to UP|Q9AR00 (Q9AR00) PSTVd RNA-biding protein,... 546 e-155
BI427521 similar to GP|13186132|emb PSTVd RNA-biding protein Vi... 228 7e-60
TC211933 similar to UP|Q9LNC4 (Q9LNC4) F9P14.9 protein, partial ... 137 2e-32
BF324724 128 8e-30
AW184861 121 7e-28
TC216667 weakly similar to GB|BAC06968.1|22093674|AP003815 kinas... 120 1e-27
TC229572 similar to UP|Q8RVV3 (Q8RVV3) Viroid RNA-binding protei... 89 7e-18
AW099730 weakly similar to GP|29569106|gb| global transcription ... 80 2e-15
BI497724 similar to GP|16323117|gb| AT3g01770/F28J7_10 {Arabidop... 73 4e-13
TC218537 similar to UP|Q8RVV3 (Q8RVV3) Viroid RNA-binding protei... 70 3e-12
TC216982 similar to UP|Q9AR19 (Q9AR19) Histone acetyltransferase... 50 3e-06
TC227246 similar to UP|Q941A9 (Q941A9) At1g26300/F28B23_4, parti... 44 1e-04
TC215813 similar to UP|O49529 (O49529) Predicted protein, partia... 44 2e-04
TC208977 44 2e-04
TC227244 similar to UP|Q941A9 (Q941A9) At1g26300/F28B23_4, parti... 42 0.001
TC209667 similar to GB|BAC22265.1|24414015|AP003803 arm repeat c... 41 0.001
TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%) 41 0.002
TC208362 weakly similar to UP|O64835 (O64835) Expressed protein ... 41 0.002
TC211175 weakly similar to UP|Q9LIE8 (Q9LIE8) Similarity to cell... 40 0.003
TC211475 similar to UP|P79122 (P79122) Pinin, partial (5%) 39 0.005
>TC229250 similar to UP|Q9AR00 (Q9AR00) PSTVd RNA-biding protein, Virp1
(PSTVd RNA-binding protein Virp1a) (PSTVd RNA-binding
protein Virp1b) (PSTVd RNA-binding protein Virp1c)
(PSTVd RNA-binding protein Virp1d), partial (34%)
Length = 1450
Score = 546 bits (1406), Expect = e-155
Identities = 287/429 (66%), Positives = 333/429 (76%), Gaps = 15/429 (3%)
Frame = +2
Query: 7 ANRNEPNWPQHRGGGAGFMGKVPYANPNPNPKF-------KRNQSPSDDASSINRRSNDV 59
A RNEPNWP+HR GGAGFMGKVP++NPNPNP K+ QS SDDASSINRRSND
Sbjct: 215 AYRNEPNWPRHRSGGAGFMGKVPFSNPNPNPNSNPKLANGKKTQSASDDASSINRRSNDA 394
Query: 60 VTNHSQYVTFNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNGGGSAKK 119
T HSQYVTFNV+S +K ELN+ +N V+ELEQI++L+ +I S E + S NG KK
Sbjct: 395 AT-HSQYVTFNVASCTKKELNDFKNRLVSELEQIQKLRNQIGSSEFQPGQSLNG--HPKK 565
Query: 120 SANKKFSGNKRPFPAE--KELKRSKSEVGSAMKACGQILQKLMKTKIGWIFSSPVDPVAL 177
+ KK SGNKRP P+ K+LKRS SEVG+ MK C Q+LQKL+K K GW+F +PVD V L
Sbjct: 566 PSGKKISGNKRPLPSNSAKDLKRSHSEVGNLMKCCSQVLQKLIKHKHGWVFKAPVDVVGL 745
Query: 178 NLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQ 237
LHDY DIIK PMDLGTVKS L+KN Y+TPA+FA DV+LTF NAL YNPKGHDV T A Q
Sbjct: 746 KLHDYCDIIKQPMDLGTVKSNLSKNVYATPADFASDVRLTFNNALAYNPKGHDVYTMAEQ 925
Query: 238 LLEKFEELYRPIQEKFD-----EKSFDDELQASSWNHVEPERERERVKKKDNPIPIPPPV 292
LL +FEELYRP+ EKF+ ++ ++ELQASSW+ VEPER VKKK+NPIP P
Sbjct: 926 LLARFEELYRPVHEKFEGSIVHDRESEEELQASSWSQVEPER----VKKKENPIP---PA 1084
Query: 293 AKRQELLPE-PASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPLKQPKPKARDPNKREM 351
+E P+ PAS+SN PPL QSPVRTPSP RA PVKPLKQPKPKA+DPNKR+M
Sbjct: 1085KLHKEPPPQHPASSSN-------PPLVQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKRDM 1243
Query: 352 NVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLV 411
++EEKHKLGLGLQ LPPEKMEQVVQIIR+RNGHL+QDGDEIEL +EAVDTETLWELDRLV
Sbjct: 1244SLEEKHKLGLGLQSLPPEKMEQVVQIIRRRNGHLKQDGDEIELHIEAVDTETLWELDRLV 1423
Query: 412 TNWKKMVSK 420
TN+KKMVSK
Sbjct: 1424TNYKKMVSK 1450
>BI427521 similar to GP|13186132|emb PSTVd RNA-biding protein Virp1
{Lycopersicon esculentum}, partial (15%)
Length = 421
Score = 228 bits (580), Expect = 7e-60
Identities = 113/137 (82%), Positives = 126/137 (91%), Gaps = 3/137 (2%)
Frame = +1
Query: 309 PSTSNPPPLAQSPVRTPSPTRALPVKPLKQPKPKARDPNKREMNVEEKHKLGLGLQILPP 368
P++S+ PPL QSPVRTPSP RA PVKPLKQPKPKA+DPNKR+M++EEKHKLGLGLQ LPP
Sbjct: 10 PASSSNPPLLQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKRDMSLEEKHKLGLGLQSLPP 189
Query: 369 EKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTNWKKMVSKIKRQALMD 428
EKMEQVVQIIR+RNGHL+QDGDEIELD+EAVDTETLWELDRLVTN+KKMVSKIKRQALM
Sbjct: 190 EKMEQVVQIIRRRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNYKKMVSKIKRQALMG 369
Query: 429 ---NNNVPSNKGNGELP 442
N+NV +NKGN ELP
Sbjct: 370 NIYNDNVQANKGNEELP 420
>TC211933 similar to UP|Q9LNC4 (Q9LNC4) F9P14.9 protein, partial (15%)
Length = 710
Score = 137 bits (344), Expect = 2e-32
Identities = 101/280 (36%), Positives = 142/280 (50%), Gaps = 1/280 (0%)
Frame = +2
Query: 224 YNPKGHDVNTAAMQLLEKFEELYRPIQEKFD-EKSFDDELQASSWNHVEPERERERVKKK 282
YNPKG DV+ A QL FEE + I+ ++ E ++ + A S V +K
Sbjct: 2 YNPKGQDVHIMAEQLSNIFEERWAIIESNYNREMTYGLDYGAPS-----------PVSRK 148
Query: 283 DNPIPIPPPVAKRQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPLKQPKPK 342
P PPP+ R+ +L S + P P + RTP+P KPK
Sbjct: 149 APPFR-PPPIDMRR-ILDRSESMTQPPKIMGITPSS----RTPAPK-----------KPK 277
Query: 343 ARDPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTE 402
A+DP+KR+M EEK KL LQ LP EK++ +VQII+KRN L Q DEIE+D+++VDTE
Sbjct: 278 AKDPHKRDMTYEEKQKLSTHLQSLPSEKLDAIVQIIKKRNSALSQHDDEIEVDIDSVDTE 457
Query: 403 TLWELDRLVTNWKKMVSKIKRQALMDNNNVPSNKGNGELPDREKVDATPPSEGKKQKKID 462
TLWELDR VTN+KK +SK KR+A + + RE+ + + +QK
Sbjct: 458 TLWELDRFVTNYKKSLSKNKRKAEL------------AILARERAE-----QNAQQKSQA 586
Query: 463 TVDEDVDIGDDMPANDFPPVEIEKDKDMGGTGGRASSSSS 502
V ++ + PP E+ + G + SSSSS
Sbjct: 587 PVAVEIPKETQADERNVPPSLPEQGQIPVDNGSKTSSSSS 706
>BF324724
Length = 358
Score = 128 bits (321), Expect = 8e-30
Identities = 66/99 (66%), Positives = 79/99 (79%), Gaps = 7/99 (7%)
Frame = +2
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYANPNP----NPKF---KRNQSPSDDASSIN 53
MASAVLANRNEPNWP+HR GGAGFMGKVP++NPNP NPK KR S SDDASSIN
Sbjct: 62 MASAVLANRNEPNWPKHRVGGAGFMGKVPFSNPNPKSKSNPKLANSKRTLSASDDASSIN 241
Query: 54 RRSNDVVTNHSQYVTFNVSSYSKSELNELRNCFVTELEQ 92
RRSND VT SQYV+FN++SY+ E+N+L++ +ELE+
Sbjct: 242 RRSNDFVT-FSQYVSFNIASYTNKEINDLKDRLTSELER 355
>AW184861
Length = 448
Score = 121 bits (304), Expect = 7e-28
Identities = 56/102 (54%), Positives = 77/102 (74%)
Frame = +2
Query: 155 ILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDV 214
+L+KLM+ K GW+F+SPVD L LHDYF II HPMDLGTVK++L KN Y +P EFA+DV
Sbjct: 8 LLEKLMRHKHGWVFNSPVDVETLGLHDYFTIITHPMDLGTVKTRLNKNWYKSPKEFAEDV 187
Query: 215 KLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFDEK 256
+LTF+NA+TYNP+G DV+ A L + FE+ + I+ ++ +
Sbjct: 188 RLTFRNAMTYNPQGQDVHIMAELLSKIFEDRWAIIESDYNRE 313
>TC216667 weakly similar to GB|BAC06968.1|22093674|AP003815 kinase-like
protein {Oryza sativa (japonica cultivar-group);} ,
partial (21%)
Length = 892
Score = 120 bits (302), Expect = 1e-27
Identities = 66/161 (40%), Positives = 99/161 (60%)
Frame = +3
Query: 106 KSRSSHNGGGSAKKSANKKFSGNKRPFPAEKELKRSKSEVGSAMKACGQILQKLMKTKIG 165
K+R ++ S+ ++NK+ G +KE KR K + +M+ C IL+ LM
Sbjct: 372 KNRRCNSNENSSALNSNKR--GPPVSVEGQKE-KRQKIDRKGSMQ-CATILKSLMSHTYS 539
Query: 166 WIFSSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYN 225
W+FS PVDP+AL++ DYF II HPMDLGT+KSKL KN YS EFA DV+LTF NA+ YN
Sbjct: 540 WVFSKPVDPIALSIPDYFTIISHPMDLGTIKSKLEKNIYSGTEEFAADVRLTFSNAMKYN 719
Query: 226 PKGHDVNTAAMQLLEKFEELYRPIQEKFDEKSFDDELQASS 266
P +DV+ A +L + F+ ++ + K+ + D+ ++ +
Sbjct: 720 PPSNDVHLMAKELSKIFDRKWKDLGRKWKCEDEHDKSESET 842
>TC229572 similar to UP|Q8RVV3 (Q8RVV3) Viroid RNA-binding protein
(Fragment), partial (16%)
Length = 868
Score = 88.6 bits (218), Expect = 7e-18
Identities = 47/77 (61%), Positives = 56/77 (72%)
Frame = +1
Query: 441 LPDREKVDATPPSEGKKQKKIDTVDEDVDIGDDMPANDFPPVEIEKDKDMGGTGGRASSS 500
LP EKVD P E KK KK++ DED+DIGD+MP + FPPVEIEKDKD+ G +SSS
Sbjct: 31 LPSSEKVDGGPV-EVKKPKKVEAGDEDIDIGDEMPTSMFPPVEIEKDKDVVGGHASSSSS 207
Query: 501 SSGSSSSGSGDSSSSET 517
SSGSSSS S SS S++
Sbjct: 208 SSGSSSSDSSSSSDSDS 258
>AW099730 weakly similar to GP|29569106|gb| global transcription factor group
E {Zea mays}, partial (8%)
Length = 177
Score = 80.5 bits (197), Expect = 2e-15
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = +2
Query: 169 SSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTY 224
++PVD V L L DY+D+IK PMDLGTVKS L+ N Y+TP++FA DV+LTF NAL Y
Sbjct: 8 NAPVDVVGLQLTDYYDVIKQPMDLGTVKSNLSMNKYTTPSDFASDVRLTFNNALAY 175
>BI497724 similar to GP|16323117|gb| AT3g01770/F28J7_10 {Arabidopsis
thaliana}, partial (10%)
Length = 408
Score = 72.8 bits (177), Expect = 4e-13
Identities = 49/140 (35%), Positives = 70/140 (50%)
Frame = +1
Query: 67 VTFNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNGGGSAKKSANKKFS 126
+T +S YS ++R+C V E L++ G+ + HNG K+S + +F
Sbjct: 25 ITTELSPYS-----DIRSCSVGEKRP--PLESLALHGKKRPLLKHNGP-KTKRSISGRFI 180
Query: 127 GNKRPFPAEKELKRSKSEVGSAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDII 186
K P MK C +L+++M + G +F PVD V N+ DYF II
Sbjct: 181 SAKSAAPVTPSY-------AVLMKQCETLLKRVMSHQFGKVFDKPVDIVKWNIPDYFTII 339
Query: 187 KHPMDLGTVKSKLAKNAYST 206
KHPMDLGTVKSKL Y++
Sbjct: 340 KHPMDLGTVKSKLISCEYTS 399
>TC218537 similar to UP|Q8RVV3 (Q8RVV3) Viroid RNA-binding protein
(Fragment), partial (19%)
Length = 955
Score = 69.7 bits (169), Expect = 3e-12
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +2
Query: 465 DEDVDIGDDMPANDFPPVEIEKDKDMGGTGGRASSSSSGSSSSGSGDSSSSET 517
DEDVDIGD++P + FPPVEIEKDKD+ G +SS SSGSSSS S SS S++
Sbjct: 5 DEDVDIGDEIPTSMFPPVEIEKDKDVAGGHASSSSCSSGSSSSDSSSSSDSDS 163
>TC216982 similar to UP|Q9AR19 (Q9AR19) Histone acetyltransferase GCN5
(At3g54610) (Expressed protein), partial (53%)
Length = 1203
Score = 49.7 bits (117), Expect = 3e-06
Identities = 28/72 (38%), Positives = 38/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 155 ILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAE-FADD 213
+L+ + W F PVD A ++ DY+DIIK PMDL T+ ++ Y E F D
Sbjct: 598 LLKSMFDHADAWPFKEPVD--ARDVPDYYDIIKDPMDLKTMSKRVDSEQYYVTFEMFVAD 771
Query: 214 VKLTFKNALTYN 225
+ F NA TYN
Sbjct: 772 ARRMFANARTYN 807
>TC227246 similar to UP|Q941A9 (Q941A9) At1g26300/F28B23_4, partial (41%)
Length = 577
Score = 44.3 bits (103), Expect = 1e-04
Identities = 26/85 (30%), Positives = 40/85 (46%), Gaps = 12/85 (14%)
Frame = +3
Query: 277 ERVKKKDNPIPIPPPVAKRQELLP------EPASTSNQPSTSNPPPLAQSPVRTPSPTRA 330
+R ++ NP P+PPP + P P +P++SNPP A+ +PSPT++
Sbjct: 114 KRPRRNPNP*PLPPPGSPISSPKPPRNRRSSPPKPPRRPTSSNPPRFARQTRSSPSPTQS 293
Query: 331 L------PVKPLKQPKPKARDPNKR 349
P+ P P P R P +R
Sbjct: 294 QFLPNSPPLPPPPLPPPPPRPPPRR 368
>TC215813 similar to UP|O49529 (O49529) Predicted protein, partial (13%)
Length = 663
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/67 (37%), Positives = 31/67 (45%)
Frame = +3
Query: 284 NPIPIPPPVAKRQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPLKQPKPKA 343
NPIP PPPV LP AS PS+ NP P + SP R +P + P P
Sbjct: 153 NPIPYPPPV------LPRAASKRISPSSPNPFPASSGASPPSSPRRPIPYLKIPSPIPIP 314
Query: 344 RDPNKRE 350
P K++
Sbjct: 315 FPPTKKK 335
>TC208977
Length = 1176
Score = 43.5 bits (101), Expect = 2e-04
Identities = 23/59 (38%), Positives = 35/59 (58%)
Frame = +1
Query: 349 REMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWEL 407
R M + EK KL +Q LP +++VV++I + EQ+ D+I +D+E D TLW L
Sbjct: 550 RPMTLAEKQKLQSLIQKLPARNLDRVVELIWRNRPIEEQNCDKIFVDLEKEDDATLWRL 726
>TC227244 similar to UP|Q941A9 (Q941A9) At1g26300/F28B23_4, partial (67%)
Length = 1408
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/115 (26%), Positives = 44/115 (37%), Gaps = 21/115 (18%)
Frame = +1
Query: 277 ERVKKKDNPIPIPPPVAKRQELLP------EPASTSNQPSTSNPP----PLAQSPVRTPS 326
+R ++ NP P+PPP + P P +P++SNPP P SP TPS
Sbjct: 148 KRPRRNPNPSPLPPPGSPISSPKPPRNRRSSPPKPPRRPTSSNPPRSARPTRSSPSPTPS 327
Query: 327 P-----------TRALPVKPLKQPKPKARDPNKREMNVEEKHKLGLGLQILPPEK 370
P LP+ P P+P R + R L + PP +
Sbjct: 328 PFLPNSPPLPPPPPPLPLPPPPPPRPLRRRRSSRSSASPTTSDLSSRASLPPPSR 492
>TC209667 similar to GB|BAC22265.1|24414015|AP003803 arm repeat containing
protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (41%)
Length = 787
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/88 (30%), Positives = 38/88 (42%), Gaps = 7/88 (7%)
Frame = -3
Query: 267 WNHVEPERERERVKKKDNPIPI---PPPVAKRQELLPE-PASTSNQPSTSNPPPLAQSPV 322
W E E+E ++ +P P PP A + LLP+ P S P + + PP P
Sbjct: 503 WQRCEHRAEQESKQRTPSPSPTHPQSPPEAHQSHLLPQWPPSPPQCPPSCSAPPSPSPPF 324
Query: 323 RTPSPTRALPVKPLKQ---PKPKARDPN 347
R+P P A P + P P + PN
Sbjct: 323 RSPPPPPAPPAASPPRHSPPSPCSASPN 240
>TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%)
Length = 537
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/67 (32%), Positives = 28/67 (40%), Gaps = 5/67 (7%)
Frame = +1
Query: 286 IPIPPPVAKRQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTR-----ALPVKPLKQPK 340
+P PP P + PS S+ PP +P +TPSPT P P+ QP
Sbjct: 70 VPTPPKTPSPSYSPPNVPTPPKTPSPSSQPPFTPTPPKTPSPTSQPPYIPTPPSPISQPP 249
Query: 341 PKARDPN 347
A PN
Sbjct: 250 SIATPPN 270
Score = 38.1 bits (87), Expect = 0.010
Identities = 25/71 (35%), Positives = 32/71 (44%), Gaps = 5/71 (7%)
Frame = +1
Query: 281 KKDNPI---PIPPPVAKRQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPL- 336
K +PI PI P +P P T PS S PP +P +TPSP+ P P
Sbjct: 7 KTPSPIYAPPIAPSPGNHPPYVPTPPKT---PSPSYSPPNVPTPPKTPSPSSQPPFTPTP 177
Query: 337 -KQPKPKARDP 346
K P P ++ P
Sbjct: 178 PKTPSPTSQPP 210
>TC208362 weakly similar to UP|O64835 (O64835) Expressed protein
(At2g23670/F26B6.32), partial (72%)
Length = 805
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/82 (34%), Positives = 39/82 (47%)
Frame = -2
Query: 261 ELQASSWNHVEPERERERVKKKDNPIPIPPPVAKRQELLPEPASTSNQPSTSNPPPLAQS 320
ELQA + P + K + P+P P P A + P P S S P + +PPP S
Sbjct: 501 ELQAPKYRSPPPLQP----KSQKPPLPPPLPPAPTPQNSPPPQSPSPLPLSPSPPPPTPS 334
Query: 321 PVRTPSPTRALPVKPLKQPKPK 342
P PSP + P P+ P+P+
Sbjct: 333 P---PSPAPS-PPPPIPYPQPQ 280
>TC211175 weakly similar to UP|Q9LIE8 (Q9LIE8) Similarity to cell wall-plasma
membrane linker protein, partial (3%)
Length = 609
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/66 (31%), Positives = 26/66 (38%)
Frame = +1
Query: 281 KKDNPIPIPPPVAKRQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPLKQPK 340
K +P P P AK L P S + PS S PPP P ++P+ V P P
Sbjct: 190 KPPSPATHPAPPAKSPTLSPPSQSPAVSPSGSTPPPATNPPAKSPATQPPSSVPPASSPS 369
Query: 341 PKARDP 346
P
Sbjct: 370 NNVSSP 387
Score = 29.6 bits (65), Expect = 3.7
Identities = 13/29 (44%), Positives = 15/29 (50%)
Frame = +1
Query: 318 AQSPVRTPSPTRALPVKPLKQPKPKARDP 346
A SP +PSP A P P P P A+ P
Sbjct: 151 APSPKSSPSPPTAKPPSPATHPAPPAKSP 237
>TC211475 similar to UP|P79122 (P79122) Pinin, partial (5%)
Length = 436
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/107 (28%), Positives = 49/107 (44%), Gaps = 5/107 (4%)
Frame = +2
Query: 243 EELYRPIQEKFDEKSFDDELQASSWNHVEPERERERVKKKDNPIPIPPPVAKRQE----L 298
EE + Q+ ++ ++E + SS E E E +D +P PPP++K
Sbjct: 101 EEEEQQQQQPSSQQHEEEEEEVSSGEEEEASSEEE----EDENLP-PPPISKNPPPPPPS 265
Query: 299 LPEPASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPLKQ-PKPKAR 344
P+P TS++ T + P TP + L KP+ Q KPKA+
Sbjct: 266 NPQPQPTSSESETESGSETESEPHPTPVKVKPLASKPMDQAQKPKAQ 406
Score = 32.7 bits (73), Expect = 0.44
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Frame = +2
Query: 254 DEKSFDDELQASSWNHVEPERE------RERVKKKDNPIPIPPPVAKRQELLPEPASTSN 307
+E+ + Q SS H E E E E +++ +PPP + P P++
Sbjct: 98 EEEEEQQQQQPSSQQHEEEEEEVSSGEEEEASSEEEEDENLPPPPISKNPPPPPPSNPQP 277
Query: 308 QPSTS--------------NPPPLAQSPVRTPSPTRALPVKPLKQPKPKARDP 346
QP++S +P P+ P+ + +A KP QP P P
Sbjct: 278 QPTSSESETESGSETESEPHPTPVKVKPLASKPMDQA--QKPKAQPSPAPPPP 430
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/84 (29%), Positives = 35/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 272 PERERERV--KKKDNPIPIPPPVAKRQELLPEPASTSNQPSTSNP---PPLAQSPVRTPS 326
PE++R+ K+K P P LLP+ S + P P P Q+P P
Sbjct: 171 PEKKRKLPPKKRKTKISPHHPSPKTLHPLLPQTLSPNPLPPNPKPNRVPKPNQNPTPLPL 350
Query: 327 PTRALPVKPLKQPK-PKARDPNKR 349
+ P P +PK PK P +R
Sbjct: 351 RSNP*PPSPWTRPKSPKLNPPRRR 422
Score = 29.3 bits (64), Expect = 4.8
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -2
Query: 489 DMGGTGGRASSSSSGSSSSGSGDSSSSETS 518
+MGG G +SSSSS +SS S + +SS +S
Sbjct: 237 EMGGGGRFSSSSSSEEASSSSPEETSSSSS 148
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,772,551
Number of Sequences: 63676
Number of extensions: 383912
Number of successful extensions: 11139
Number of sequences better than 10.0: 656
Number of HSP's better than 10.0 without gapping: 5528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8919
length of query: 559
length of database: 12,639,632
effective HSP length: 102
effective length of query: 457
effective length of database: 6,144,680
effective search space: 2808118760
effective search space used: 2808118760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144564.17