BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144540.4 - phase: 0
(1225 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210125 homologue to UP|Q9LD60 (Q9LD60) Spliceosomal-like prote... 209 5e-54
TC219586 homologue to UP|Q6QNU4 (Q6QNU4) UV-damaged DNA binding ... 53 9e-07
AW234344 homologue to PIR|B85068|B8 UV-damaged DNA binding facto... 50 6e-06
AW830087 homologue to PIR|T04941|T04 UV-damaged DNA-binding prot... 45 3e-04
TC222657 41 0.004
TC209232 similar to UP|Q8RWQ4 (Q8RWQ4) AT5g19390/F7K24_140, part... 37 0.053
BM187887 33 1.0
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 31 2.9
TC221393 weakly similar to UP|Q941F6 (Q941F6) Leucine-rich repea... 31 2.9
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 30 5.0
TC225326 similar to UP|R17D_ARATH (Q9LZ17) 40S ribosomal protein... 30 5.0
AW279329 similar to GP|1053216|gb| chlorophyll a/b-binding prote... 30 5.0
TC222580 30 6.5
TC220866 similar to UP|Q7VB79 (Q7VB79) Predicted protein family ... 30 8.5
TC208206 similar to UP|Q43079 (Q43079) Cell wall invertase , pa... 30 8.5
>TC210125 homologue to UP|Q9LD60 (Q9LD60) Spliceosomal-like protein, partial
(8%)
Length = 651
Score = 209 bits (533), Expect = 5e-54
Identities = 99/102 (97%), Positives = 102/102 (99%)
Frame = +1
Query: 1124 ECIVYGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDNPPLCGRDHMAYRSAYFPVKDVI 1183
ECIV+GTVMGSVGALHAFTSRDDVDFFSHLEMHMRQD+PPLCGRDHMAYRSAYFPVKDVI
Sbjct: 1 ECIVFGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDHPPLCGRDHMAYRSAYFPVKDVI 180
Query: 1184 DGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 1225
DGDLCEQ+PTLPMDLQRKIADELDRTPGEILKKLEEVRNKII
Sbjct: 181 DGDLCEQYPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 306
>TC219586 homologue to UP|Q6QNU4 (Q6QNU4) UV-damaged DNA binding protein 1,
partial (20%)
Length = 893
Score = 52.8 bits (125), Expect = 9e-07
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 12/199 (6%)
Frame = +2
Query: 1034 ADDSVPRWLTSSYHIDFDTMAGADKFGNIFFARLPQDVSDEIEEDPTGGKIKWEQGKLNG 1093
A D W+++ +D D GA+ N+F R K +G +
Sbjct: 128 ARDYNANWMSAVEIVDDDIYLGAENSFNLFTVR------------------KNSEGATDE 253
Query: 1094 APNKVEEIVQFHVGDVITSLQKASLV-------PGGGECIVYGTVMGSVGALHAFTSRDD 1146
++E + ++H+G+ + + SLV G +++GT+ G +G + A +
Sbjct: 254 ERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTINGVIGVI-ASLPHEQ 430
Query: 1147 VDFFSHLEMHMRQDNPPLCGRDHMAYRSAYFPVKDV-----IDGDLCEQFPTLPMDLQRK 1201
F L+ ++R+ + G H +RS K V +DGDL E F L +
Sbjct: 431 YVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESFLDLNRSKMDE 610
Query: 1202 IADELDRTPGEILKKLEEV 1220
I+ +D + E+ K++EE+
Sbjct: 611 ISKAVDVSVEELCKRVEEL 667
>AW234344 homologue to PIR|B85068|B8 UV-damaged DNA binding factor-like
protein [imported] - Arabidopsis thaliana, partial (10%)
Length = 356
Score = 50.1 bits (118), Expect = 6e-06
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 558 SNRLQVVIALNGGELIYFEVDVTGQLMEVERHEMSGDVACLDIAPVPKGRLRSRFLAVGS 617
+N QV++A GG L+Y E+ G L EV+ ++ +++CLDI P+ + S AVG
Sbjct: 15 ANATQVLLATGGGHLVYLEIG-DGILQEVKHAQLEYEISCLDINPIGENPNHSNLAAVGM 191
Query: 618 Y-DKTIRILSLDPD 630
+ D ++RI SL PD
Sbjct: 192 WTDISVRIFSL-PD 230
>AW830087 homologue to PIR|T04941|T04 UV-damaged DNA-binding protein homolog
F7J7.40 - Arabidopsis thaliana, partial (5%)
Length = 194
Score = 44.7 bits (104), Expect = 3e-04
Identities = 21/57 (36%), Positives = 35/57 (60%)
Frame = +3
Query: 431 QIFTLCGRGPRSSLRIMRTGLAVSEMAVSKLPGIPSAVWTVKKNVMDEFDAYIVVSF 487
Q+ T G SLR++R G+ ++E A +L GI +W+++ + D FD ++VVSF
Sbjct: 24 QVVTCSGAYKDGSLRVVRNGIGINEQASVELQGI-KGMWSLRSSTDDPFDTFLVVSF 191
>TC222657
Length = 413
Score = 40.8 bits (94), Expect = 0.004
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 1207 DRTPGEILKKLEEVRNKII 1225
DRTPGEILKKLEEVRNKII
Sbjct: 1 DRTPGEILKKLEEVRNKII 57
>TC209232 similar to UP|Q8RWQ4 (Q8RWQ4) AT5g19390/F7K24_140, partial (24%)
Length = 1462
Score = 37.0 bits (84), Expect = 0.053
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 348 LKSGFLFAASEFGNHALYQFKGIGDDDNDVGASSASLMETE 388
++SG L +S + LY +K G DD+DVG+SS++ +TE
Sbjct: 166 VQSGKLSESSGYAGSDLYDYKAFGGDDSDVGSSSSNHAKTE 288
>BM187887
Length = 425
Score = 32.7 bits (73), Expect = 1.0
Identities = 24/102 (23%), Positives = 44/102 (42%)
Frame = +2
Query: 799 KRKLLVVIESDQGALTAEEREAARKECFEAAHAGENKTGSEDQMENGGEDEDNDDSLSDE 858
++KL VV E D + ++ R+ E A E + ED+ + G +D+ D D+
Sbjct: 65 EKKLTVVGEIDPVDVVSKLRKTWHPEIVTVGPAKEPEKKQEDKKDEGKKDDKKKD---DD 235
Query: 859 HYGYPKSESDKWVSCIRVLDPRTGNTTCLLELQENEAAFSIC 900
P + ++ V + +P + +EN A +IC
Sbjct: 236 KKKDPNQQIEELVKLYKAYNPHMTTYYYVQSAEENPNACAIC 361
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 31.2 bits (69), Expect = 2.9
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 807 ESDQGALTAEEREAARKECFEAAHAGENKTGSEDQMENGGEDEDN---DDSLSDEHYGYP 863
E D+ E EA ++ EA AG + + +D ++GG+D+D+ DD DE G
Sbjct: 445 EGDEDFSGEGEEEADPEDDPEANGAGGSDSDGDDD-DDGGDDDDDDNGDDDGEDEEEGED 621
Query: 864 KSESDK 869
+ E D+
Sbjct: 622 EDEEDE 639
>TC221393 weakly similar to UP|Q941F6 (Q941F6) Leucine-rich repeat
receptor-like kinase F21M12.36, partial (12%)
Length = 709
Score = 31.2 bits (69), Expect = 2.9
Identities = 21/43 (48%), Positives = 24/43 (54%)
Frame = -1
Query: 971 GIGPVLRLYDLGKRRLLRKCENKSFPSSIVSIHAYRDRIYVGG 1013
GIGPV RLYD KR LRK K F S S+ + R R + G
Sbjct: 424 GIGPVNRLYDKSKRLNLRKA--KLFGISPESLFSERFREFKAG 302
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 30.4 bits (67), Expect = 5.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 819 EAARKECFEAAHAGENKTGSEDQMENGGEDEDNDDSLSDE 858
EAA+ + FE E++ ED+ E+ +DED DD D+
Sbjct: 970 EAAQGDEFEDLEDDEDEEEDEDEDEDEEDDEDEDDEEEDD 1089
>TC225326 similar to UP|R17D_ARATH (Q9LZ17) 40S ribosomal protein S17-4,
partial (86%)
Length = 728
Score = 30.4 bits (67), Expect = 5.0
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 817 EREAARKECFEAAHAGENKTGSEDQMENG-GEDEDNDDSLS 856
ERE AR H G +E+Q ENG E+ED ++ LS
Sbjct: 18 ERERARARFSAREHKGTTAAVTEEQAENGSSENEDGEEILS 140
>AW279329 similar to GP|1053216|gb| chlorophyll a/b-binding protein {Glycine
max}, partial (60%)
Length = 496
Score = 30.4 bits (67), Expect = 5.0
Identities = 20/59 (33%), Positives = 26/59 (43%), Gaps = 4/59 (6%)
Frame = +2
Query: 700 LGLKAPKLFPIIVRGKRAMLCLSSRPWLG----YIHQGHFLLTPLSYETLEYAASFSSD 754
LG AP++ +I+R S PW G + HF PLSY T E +S D
Sbjct: 41 LGPSAPEVGRVIMRKTVTKQAXSGSPWYGPDLRQVLGAHFYGEPLSYLTGELPGDYSWD 217
>TC222580
Length = 346
Score = 30.0 bits (66), Expect = 6.5
Identities = 22/58 (37%), Positives = 31/58 (52%), Gaps = 4/58 (6%)
Frame = +3
Query: 343 VSICVLKSGFLFAAS----EFGNHALYQFKGIGDDDNDVGASSASLMETEEGFQPVFF 396
+S+C + LFAAS F + + YQF GI DD+ +G S+ T G P+FF
Sbjct: 18 LSVCAIP---LFAASPSPEHFSDRSNYQFSGIDSDDSSLG----SIALTVSG--PLFF 164
>TC220866 similar to UP|Q7VB79 (Q7VB79) Predicted protein family PM-3,
partial (9%)
Length = 1161
Score = 29.6 bits (65), Expect = 8.5
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 718 MLCLSSRPWLGYIHQGHFLLTPLS 741
+LCLSS WL Y + FL TPLS
Sbjct: 555 VLCLSSFLWLHYTYISSFLSTPLS 626
>TC208206 similar to UP|Q43079 (Q43079) Cell wall invertase , partial (53%)
Length = 1092
Score = 29.6 bits (65), Expect = 8.5
Identities = 21/56 (37%), Positives = 26/56 (45%)
Frame = +1
Query: 199 TGVAASQAQKHLIFYELDLGLNHVSRKWSDQVDNGANMLVTVPGGADGPSGVLVCA 254
TGV A+QA + F + G V KW D + V GG GP G+LV A
Sbjct: 409 TGVTAAQADVEISFDVNEFGKGEVLDKWVDPQILCSRKGAAVKGGL-GPFGLLVFA 573
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,509,771
Number of Sequences: 63676
Number of extensions: 650844
Number of successful extensions: 2905
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of query: 1225
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1117
effective length of database: 5,762,624
effective search space: 6436851008
effective search space used: 6436851008
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144540.4