BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144539.1 + phase: 0
(163 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215797 weakly similar to GB|AAL49942.1|17979251|AY070476 AT3g5... 166 6e-42
TC225833 similar to GB|AAL49942.1|17979251|AY070476 AT3g53990/F5... 164 2e-41
TC225830 similar to GB|AAL49942.1|17979251|AY070476 AT3g53990/F5... 162 5e-41
TC230285 similar to UP|Q9FES4 (Q9FES4) ENOD18 protein (Fragment)... 155 1e-38
TC215798 weakly similar to GB|AAL49942.1|17979251|AY070476 AT3g5... 145 6e-36
TC224740 115 1e-26
TC225835 similar to UP|Q9ATM2 (Q9ATM2) Small basic membrane inte... 85 1e-17
TC218003 78 2e-15
TC215799 weakly similar to GB|AAL49942.1|17979251|AY070476 AT3g5... 77 5e-15
BQ299098 76 6e-15
TC207729 76 6e-15
TC215849 weakly similar to UP|Q84TF6 (Q84TF6) At1g09740, partial... 74 4e-14
TC206752 weakly similar to UP|Q8H454 (Q8H454) Universal stress p... 73 5e-14
TC215848 72 1e-13
TC215330 similar to UP|Q6T7D1 (Q6T7D1) Fiber protein Fb19 (Fragm... 71 2e-13
TC228830 similar to GB|AAN28779.1|23505839|AY143840 At4g27320/M4... 65 2e-11
TC221051 similar to UP|Q9SWV2 (Q9SWV2) ER6 protein (Fragment), p... 62 2e-10
TC225834 similar to UP|Q9FES4 (Q9FES4) ENOD18 protein (Fragment)... 59 1e-09
TC215327 similar to UP|Q6T7D1 (Q6T7D1) Fiber protein Fb19 (Fragm... 59 1e-09
TC215329 similar to UP|Q6T7D1 (Q6T7D1) Fiber protein Fb19 (Fragm... 57 4e-09
>TC215797 weakly similar to GB|AAL49942.1|17979251|AY070476
AT3g53990/F5K20_290 {Arabidopsis thaliana;} , partial
(97%)
Length = 913
Score = 166 bits (419), Expect = 6e-42
Identities = 77/159 (48%), Positives = 107/159 (66%)
Frame = +2
Query: 1 MASARRLGIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHGEMQLWEVTGSPL 60
M S R++G+A+DFS S A +W +DN++ GD L ++ +P LW TGSPL
Sbjct: 92 MNSDRKIGVALDFSKGSKIALKWAIDNLISNGDTLYIVHTKPSGGSESGNLLWSTTGSPL 271
Query: 61 TPLGEFINSDLPKKYEIKTDPEVLKIATTAIEQKKVVVLVKVYWGDAREKLCEAIEQVPL 120
PL EF ++ + YE+ TD EVL + TA QK+V V+ K+YWGDAREK+ EA+ + L
Sbjct: 272 IPLSEFREKEVMRHYEVDTDAEVLDLLDTASRQKQVNVVAKLYWGDAREKIVEAVGDLKL 451
Query: 121 DGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVKSS 159
D L MG+RGLG ++R ++GSV+NYV NASCP+T+VK S
Sbjct: 452 DSLVMGSRGLGAIQRVLLGSVTNYVTANASCPITIVKDS 568
>TC225833 similar to GB|AAL49942.1|17979251|AY070476 AT3g53990/F5K20_290
{Arabidopsis thaliana;} , partial (98%)
Length = 930
Score = 164 bits (414), Expect = 2e-41
Identities = 76/157 (48%), Positives = 108/157 (68%)
Frame = +1
Query: 1 MASARRLGIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHGEMQLWEVTGSPL 60
MA R +G+A+DFS S A +W +N+ +GD + +I I P + +LW +GSPL
Sbjct: 142 MAKDRTIGVALDFSKSSKNALKWAFENLADKGDTIYVIHINPNSLDESRNKLWAKSGSPL 321
Query: 61 TPLGEFINSDLPKKYEIKTDPEVLKIATTAIEQKKVVVLVKVYWGDAREKLCEAIEQVPL 120
PL EF ++ KKY+++ D EVL + TA QK++ ++ K+YWGDAREKL +AIE + L
Sbjct: 322 IPLVEFREPEIMKKYDVEIDIEVLDMLDTASRQKEIHIVTKIYWGDAREKLLDAIEDLKL 501
Query: 121 DGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVK 157
D L MG+RGL T++R I+GSVSN+V+ NA CPVT+VK
Sbjct: 502 DSLVMGSRGLSTIQRIILGSVSNFVMTNAPCPVTIVK 612
>TC225830 similar to GB|AAL49942.1|17979251|AY070476 AT3g53990/F5K20_290
{Arabidopsis thaliana;} , partial (98%)
Length = 878
Score = 162 bits (411), Expect = 5e-41
Identities = 75/161 (46%), Positives = 111/161 (68%)
Frame = +1
Query: 1 MASARRLGIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHGEMQLWEVTGSPL 60
MA R +G+A+DFS S A +W ++N+ +GD + +I I + +LW +GSPL
Sbjct: 106 MAKDRTIGVALDFSKSSKNALKWALENLADKGDTIYVIHINSNSLDESRNKLWAESGSPL 285
Query: 61 TPLGEFINSDLPKKYEIKTDPEVLKIATTAIEQKKVVVLVKVYWGDAREKLCEAIEQVPL 120
PL EF ++ KKY+++ D EVL + TA QK++ ++ K+YWGDAREKL +AIE + L
Sbjct: 286 IPLVEFREPEIMKKYDVQIDIEVLDLLDTASRQKEIHIVTKIYWGDAREKLLDAIEDLKL 465
Query: 121 DGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVKSSGQ 161
D L MG+RGL T++R I+GSVSN+V+ +ASCPVT+VK + +
Sbjct: 466 DSLVMGSRGLSTIQRIILGSVSNFVMTHASCPVTIVKETSK 588
>TC230285 similar to UP|Q9FES4 (Q9FES4) ENOD18 protein (Fragment), partial
(94%)
Length = 686
Score = 155 bits (391), Expect = 1e-38
Identities = 74/157 (47%), Positives = 109/157 (69%)
Frame = +1
Query: 1 MASARRLGIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHGEMQLWEVTGSPL 60
M R +G+A+DFS S A +W ++N+ +G L +I + P + QLW +GSPL
Sbjct: 49 MVKDRNVGVALDFSKSSKIALKWAIENLADKGQTLYIIHVNPNSSDDRN-QLWVKSGSPL 225
Query: 61 TPLGEFINSDLPKKYEIKTDPEVLKIATTAIEQKKVVVLVKVYWGDAREKLCEAIEQVPL 120
PL EF ++++ K Y ++TD EVL + TA QK+V V+VK+YWGD REKL ++IE + L
Sbjct: 226 VPLTEFRDAEVTKHYGVQTDAEVLDLLDTAARQKEVNVVVKLYWGDVREKLLDSIEDLKL 405
Query: 121 DGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVK 157
+ L +G+RGLGT++R I+GSVSN+V+ +A CPVT+VK
Sbjct: 406 NSLVLGSRGLGTIQRMILGSVSNFVMTHAPCPVTIVK 516
>TC215798 weakly similar to GB|AAL49942.1|17979251|AY070476
AT3g53990/F5K20_290 {Arabidopsis thaliana;} , partial
(94%)
Length = 721
Score = 145 bits (367), Expect = 6e-36
Identities = 69/152 (45%), Positives = 96/152 (62%)
Frame = +1
Query: 8 GIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHGEMQLWEVTGSPLTPLGEFI 67
G+ FS S A +W +D ++ GD ++ I+ LW TGSPL PL EF
Sbjct: 1 GVXXXFSKXSKIALKWAIDXXLRNGDIXYIVHIKXXGGSEFRNLLWSTTGSPLIPLSEFR 180
Query: 68 NSDLPKKYEIKTDPEVLKIATTAIEQKKVVVLVKVYWGDAREKLCEAIEQVPLDGLTMGN 127
++ YE+ TD EVL + TA +K+V V+ K+YWGDAREK+ EA+ + LD L MG+
Sbjct: 181 EKEVMHHYEVDTDAEVLDLLDTASREKQVTVVAKLYWGDAREKIVEAVGDLKLDSLVMGS 360
Query: 128 RGLGTLRRAIMGSVSNYVVNNASCPVTVVKSS 159
RGLG ++R ++GSV+NYV NASCP+T+VK S
Sbjct: 361 RGLGAIQRVLLGSVTNYVTTNASCPITIVKDS 456
>TC224740
Length = 694
Score = 115 bits (287), Expect = 1e-26
Identities = 58/110 (52%), Positives = 73/110 (65%), Gaps = 3/110 (2%)
Frame = +2
Query: 57 GSPLTPLGEFINSDLPKKYEIKTDPEVLKIATTAIEQKKVVVLVKVYWGDAREKLCEAIE 116
GSPL PL E + K+Y I DPEV+ I TA + K + KVYWGD REKLC A+E
Sbjct: 44 GSPLVPLEELRELNFTKQYGIARDPEVIGILDTASKTKGAKAVAKVYWGDPREKLCNAVE 223
Query: 117 QVPLDGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVK---SSGQHH 163
+ LD L +G+RGLG ++R ++GSVS +V+ NASCPVTVVK SS H
Sbjct: 224 DLHLDSLVVGSRGLGPIKRVLLGSVSKHVMTNASCPVTVVKGKQSSNSRH 373
>TC225835 similar to UP|Q9ATM2 (Q9ATM2) Small basic membrane integral protein
ZmSIP1-2, partial (25%)
Length = 738
Score = 85.1 bits (209), Expect = 1e-17
Identities = 34/70 (48%), Positives = 53/70 (75%)
Frame = +1
Query: 88 TTAIEQKKVVVLVKVYWGDAREKLCEAIEQVPLDGLTMGNRGLGTLRRAIMGSVSNYVVN 147
T QK++ ++ K+YWGDAREKL +AIE + LD L MG++GL T++R I+ V+N+++
Sbjct: 334 TLXSRQKEIHIVTKIYWGDAREKLLDAIEDLKLDSLVMGSKGLXTIQRIILRXVTNFIIT 513
Query: 148 NASCPVTVVK 157
NA CP+T++K
Sbjct: 514 NAPCPITIIK 543
>TC218003
Length = 797
Score = 77.8 bits (190), Expect = 2e-15
Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Frame = +2
Query: 5 RRLGIAMDFSPCSIKAFQWTVDNIVKEG--DNLILIIIRPEEYEHGEMQLWEVTGSPLTP 62
RR+ +A+D S+ A W++ NI+ + D LIL+ ++P + + P TP
Sbjct: 77 RRVLVAVDEGEESMYALSWSLKNIIFQNSRDTLILLYVKPPHAVYSPLDSTGRIDDPETP 256
Query: 63 LGEFINSDLP---KKYEIKTDPEVLKIATTAIEQ-KKVVVLVKVYWGDAREKLCEAIEQV 118
G + D+ +KY + VL+ A + + V+V +V GD R+ +C+ +++
Sbjct: 257 -GYLFSPDISAAIEKYSQEVADCVLEKAKKLCKDLQNVMVETRVESGDPRDVICDMSQKL 433
Query: 119 PLDGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVK 157
D L MG+ G G ++RA +GSVSNY N CP+ +VK
Sbjct: 434 GADLLIMGSHGYGVVKRAFLGSVSNYCSQNVKCPILIVK 550
>TC215799 weakly similar to GB|AAL49942.1|17979251|AY070476
AT3g53990/F5K20_290 {Arabidopsis thaliana;} , partial
(53%)
Length = 357
Score = 76.6 bits (187), Expect = 5e-15
Identities = 36/86 (41%), Positives = 52/86 (59%)
Frame = +3
Query: 1 MASARRLGIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHGEMQLWEVTGSPL 60
M+S R +G+A+DFS S A +W +DN+++ GD L ++ I+P LW TGSPL
Sbjct: 93 MSSDRNIGVALDFSKGSKIALKWAIDNLLRNGDILYIVHIKPSGGSEFRNLLWSTTGSPL 272
Query: 61 TPLGEFINSDLPKKYEIKTDPEVLKI 86
PL EF ++ YE+ TD EVL +
Sbjct: 273 IPLSEFREKEVMHPYEVDTDAEVLDL 350
>BQ299098
Length = 421
Score = 76.3 bits (186), Expect = 6e-15
Identities = 37/92 (40%), Positives = 57/92 (61%)
Frame = +1
Query: 5 RRLGIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHGEMQLWEVTGSPLTPLG 64
R +G+A+DFS S A +W ++N+ +G L +I + P + QLW +GSPL PL
Sbjct: 1 RNVGVALDFSKSSKIALKWAIENLADKGQTLYIIHVNPNSSDDRN-QLWVKSGSPLVPLT 177
Query: 65 EFINSDLPKKYEIKTDPEVLKIATTAIEQKKV 96
EF ++++ K Y ++TD EVL + TA QK+V
Sbjct: 178EFRDAEVTKHYGVQTDAEVLDLLDTAARQKEV 273
>TC207729
Length = 770
Score = 76.3 bits (186), Expect = 6e-15
Identities = 50/165 (30%), Positives = 81/165 (48%), Gaps = 11/165 (6%)
Frame = +3
Query: 9 IAMDFSPCSIKAFQWTVDNIVK-----------EGDNLILIIIRPEEYEHGEMQLWEVTG 57
+A+D S S A +W +DN+ E D ++ ++ E H + G
Sbjct: 105 VAIDESEGSFYALKWALDNLFTTMATVGEASSPENDGMVFLV-HVEPKVHNYVYPIGPGG 281
Query: 58 SPLTPLGEFINSDLPKKYEIKTDPEVLKIATTAIEQKKVVVLVKVYWGDAREKLCEAIEQ 117
+ P ++S KK + + +L A K V + GDARE +CEA EQ
Sbjct: 282 AAFYPATVVVDS--VKKAQQERSAAILSRALKMCHDKLVKGESIILHGDAREMICEAAEQ 455
Query: 118 VPLDGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVKSSGQH 162
+ ++ L +G+RGLGTL+R +GSVS+Y ++A P+ +VK +H
Sbjct: 456 MQINLLVLGSRGLGTLKRTFLGSVSDYCAHHAKTPILIVKPPSEH 590
>TC215849 weakly similar to UP|Q84TF6 (Q84TF6) At1g09740, partial (36%)
Length = 751
Score = 73.6 bits (179), Expect = 4e-14
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Frame = +2
Query: 5 RRLGIAMDFSPCSIKAFQWTVDNIVKEG--DNLILIIIRPEEYEHGEMQLWEVTGSPLTP 62
RR+ +A+D S+ A W + N+ + D LIL+ ++P VT S
Sbjct: 104 RRILVAVDEGEESMYALSWCLKNLSFQNSKDTLILLYVKPPR----------VTYSAFDG 253
Query: 63 LGEFINSDLPKKYEIKTDPEVLKIATTAIEQKKVV------VLVKVYWGDAREKLCEAIE 116
G F SD+ E + ++A +E+ K + V +V GD R+ +C+ ++
Sbjct: 254 TGYFFASDITATMERYSQ----QVADCVLEKAKKLCKNIENVETRVENGDTRDVICQMVQ 421
Query: 117 QVPLDGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVK 157
++ D L MG+ G G ++RA +GSVSN+ N CPV +VK
Sbjct: 422 KLGADVLVMGSHGYGLIKRAFLGSVSNHCAQNVKCPVLIVK 544
>TC206752 weakly similar to UP|Q8H454 (Q8H454) Universal stress protein
USP1-like protein, partial (29%)
Length = 896
Score = 73.2 bits (178), Expect = 5e-14
Identities = 42/153 (27%), Positives = 76/153 (49%)
Frame = +3
Query: 5 RRLGIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHGEMQLWEVTGSPLTPLG 64
R++ +A+D S S+ A W + N++ E + L+L+ +RP + S +
Sbjct: 138 RKIMVAVDESQESMHALSWCITNLISETNKLVLLYVRPPSAFYSLDAAGYNFSSDVVDAM 317
Query: 65 EFINSDLPKKYEIKTDPEVLKIATTAIEQKKVVVLVKVYWGDAREKLCEAIEQVPLDGLT 124
E + L + + + T I ++VV + G A+ +C A++++ D L
Sbjct: 318 EKYSMHLANSVMERAEAVCRDLNATNINMERVVGV-----GHAKNVICSAVKKLEADTLV 482
Query: 125 MGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVK 157
MG G G +RA++GSVS++ +A CPV +VK
Sbjct: 483 MGTHGYGFFKRALLGSVSDHCAKHAKCPVVIVK 581
>TC215848
Length = 888
Score = 72.0 bits (175), Expect = 1e-13
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Frame = +2
Query: 5 RRLGIAMDFSPCSIKAFQWTVDNIVKEG--DNLILIIIRPEEYEHGEMQLWEVTGSPLTP 62
RR+ +A+D S+ A W + N+ + D L+L+ ++P VT S
Sbjct: 68 RRILVAVDEGEESMYALSWCLKNLAFQNSKDTLLLLYVKPPR----------VTYSAFDG 217
Query: 63 LGEFINSDLPKKYEIKTDPEVLKIATTAIEQKKVV------VLVKVYWGDAREKLCEAIE 116
G +SD+ E + ++A +E+ K + V +V GD R+ +C+ ++
Sbjct: 218 TGYLFSSDITATMERYSQ----QVADCVLEKAKKLCNNIENVETRVENGDPRDVICQMVQ 385
Query: 117 QVPLDGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVK 157
++ D L MG+ G G ++RA +GSVSN+ N CPV +VK
Sbjct: 386 KLGADVLVMGSHGYGLIKRAFLGSVSNHCAQNVKCPVLIVK 508
>TC215330 similar to UP|Q6T7D1 (Q6T7D1) Fiber protein Fb19 (Fragment),
partial (94%)
Length = 1021
Score = 71.2 bits (173), Expect = 2e-13
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Frame = +1
Query: 9 IAMDFSPCSIKAFQWTVDNIVKEGD----NLILIIIRPEEYEHGEMQLWEVTGSPLTPLG 64
I +D S S A QWT+D+++ + + L+ +P G +
Sbjct: 28 IGIDDSDFSTYALQWTLDHLLSPANVPKFKIFLVYAKPSV-----ASAVGFVGPGAAEVL 192
Query: 65 EFINSDLPKKYEIKTDPEVLKIATTAIEQKKVV-VLVKVYWGDAREKLCEAIEQVPLDGL 123
+ +DL K T ++ + AT ++K V V V+V GD R LCEA+E+ L
Sbjct: 193 PVVEADLRK-----TAAKITERATELCKKKSVNDVAVEVLEGDPRNVLCEAVEKHQASML 357
Query: 124 TMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVKSSGQHH 163
+G+ G GTL+RA++GSVS+Y ++A C V +VK H
Sbjct: 358 VVGSHGYGTLKRAVLGSVSDYCAHHAHCTVMIVKKPKHKH 477
>TC228830 similar to GB|AAN28779.1|23505839|AY143840 At4g27320/M4I22_130
{Arabidopsis thaliana;} , partial (62%)
Length = 778
Score = 64.7 bits (156), Expect = 2e-11
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Frame = +3
Query: 5 RRLGIAMDFSPCSIKAFQWTVDNIVKEGDNLILIIIRPEEYEHG------EMQLWEVTGS 58
R++G+A+D S S A +W V + ++ GD +IL+ + G ++ + S
Sbjct: 189 RKIGVAVDLSDESAYAVRWAVQHYIRPGDAVILLHVSATNVLFGADWGSIDLSINTDPNS 368
Query: 59 PLTPLGEFINS-DLPKKYEIKTDPEVL---KIATTAIEQKKVVVLVKVYW---GDAREKL 111
+ NS D K +++ D + K A A +++ + K++ D +E+L
Sbjct: 369 DEDAVSAVNNSNDHNSKRKLEDDFDAFTASKAADLAKPLRELQIPFKIHIVKDHDMKERL 548
Query: 112 CEAIEQVPLDGLTMGNRGLGTLRRAI---MGSVSNYVVNNASCPVTVVK 157
C +E++ L + MG+RG G +RR +GSVS+Y V++ CPV VV+
Sbjct: 549 CLEVERLGLSAVIMGSRGFGAVRRGSDGKLGSVSDYCVHHCVCPVVVVR 695
>TC221051 similar to UP|Q9SWV2 (Q9SWV2) ER6 protein (Fragment), partial (57%)
Length = 666
Score = 61.6 bits (148), Expect = 2e-10
Identities = 26/60 (43%), Positives = 40/60 (66%)
Frame = +1
Query: 98 VLVKVYWGDAREKLCEAIEQVPLDGLTMGNRGLGTLRRAIMGSVSNYVVNNASCPVTVVK 157
V V GD +EK+CEA++ + D L MG+R G ++R +GSVSNY +++ CPV ++K
Sbjct: 139 VRTHVLVGDPKEKICEAVQDLNADVLVMGSRAFGPIKRMFLGSVSNYCAHHSPCPVIIIK 318
>TC225834 similar to UP|Q9FES4 (Q9FES4) ENOD18 protein (Fragment), partial
(29%)
Length = 584
Score = 58.9 bits (141), Expect = 1e-09
Identities = 24/49 (48%), Positives = 37/49 (74%)
Frame = +2
Query: 98 VLVKVYWGDAREKLCEAIEQVPLDGLTMGNRGLGTLRRAIMGSVSNYVV 146
++ K+YWGDAREKL +AIE + LD L MG+RGL T++R ++ N+++
Sbjct: 32 IVTKIYWGDAREKLLDAIEDLKLDSLVMGSRGLSTIQRCLLFLSLNFLI 178
>TC215327 similar to UP|Q6T7D1 (Q6T7D1) Fiber protein Fb19 (Fragment),
partial (95%)
Length = 871
Score = 58.9 bits (141), Expect = 1e-09
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Frame = +1
Query: 9 IAMDFSPCSIKAFQWTVDNIVKEGD-NLILIIIRPEEYEHGEMQLWEVTGSPLTPLGEFI 67
I +D S S A W +DN L+LI RP G + +
Sbjct: 85 IGIDDSEQSTYALNWALDNFFPSPIFKLVLIHSRPTA-----TSAVGFAGPGAAEVLPIV 249
Query: 68 NSDLPKKYEIKTDPEVLKIATTAIEQKKVV-VLVKVYWGDAREKLCEAIEQVPLDGLTMG 126
+SDL K VL+ A K V V +V GD R LC+A+++ L +G
Sbjct: 250 DSDLRK-----IGARVLETAKQLCINKSVNDVTAEVVEGDPRNVLCDAVDKYRAAMLVVG 414
Query: 127 NRGLGTLRRAIMGSVSNYVVNNASCPVTVVKSSGQHH 163
+ G G ++RA++GSVS+Y ++A C V +VK H
Sbjct: 415 SHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH 525
>TC215329 similar to UP|Q6T7D1 (Q6T7D1) Fiber protein Fb19 (Fragment),
partial (95%)
Length = 846
Score = 57.0 bits (136), Expect = 4e-09
Identities = 31/92 (33%), Positives = 50/92 (53%), Gaps = 8/92 (8%)
Frame = +1
Query: 80 DPEVLKIATTAIEQKKVV--------VLVKVYWGDAREKLCEAIEQVPLDGLTMGNRGLG 131
D ++ KIA +E K + V +V GD R LC+A+++ L +G+ G G
Sbjct: 355 DSDLRKIAARVLETAKQLCFNKSVNDVTAEVVEGDPRNVLCDAVDKYRAAILVVGSHGYG 534
Query: 132 TLRRAIMGSVSNYVVNNASCPVTVVKSSGQHH 163
++RA++GSVS+Y ++A C V +VK H
Sbjct: 535 AIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH 630
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,433,442
Number of Sequences: 63676
Number of extensions: 68878
Number of successful extensions: 344
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of query: 163
length of database: 12,639,632
effective HSP length: 90
effective length of query: 73
effective length of database: 6,908,792
effective search space: 504341816
effective search space used: 504341816
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144539.1