BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144517.14 - phase: 0 /pseudo
(56 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI938280 similar to GP|8778320|gb|A F14J16.30 {Arabidopsis thali... 42 9e-05
TC207946 similar to UP|Q9LG09 (Q9LG09) F14J16.29, partial (24%) 39 4e-04
BQ611779 similar to GP|8778315|gb|A F14J16.29 {Arabidopsis thali... 32 0.068
BQ253093 29 0.57
AI440914 28 0.75
TC226993 homologue to UP|GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 deh... 28 0.75
TC226995 similar to UP|GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehyd... 28 1.3
TC218985 similar to UP|HPPD_DAUCA (O23920) 4-hydroxyphenylpyruva... 27 2.2
TC203407 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pr... 27 2.8
TC207437 similar to UP|O81922 (O81922) Proline-rich protein, par... 26 4.9
TC205172 similar to UP|DX_DROME (Q23985) Deltex protein, partial... 25 6.3
AI507725 weakly similar to GP|15021746|gb| root nodule extensin ... 25 6.3
TC205629 similar to UP|Q9LEX1 (Q9LEX1) CaLB protein (At3g61050),... 25 8.3
AI900422 25 8.3
TC208794 homologue to UP|O82260 (O82260) Expressed protein, part... 25 8.3
TC204059 similar to UP|Q94ES3 (Q94ES3) Root nodule extensin (Fra... 25 8.3
>AI938280 similar to GP|8778320|gb|A F14J16.30 {Arabidopsis thaliana},
partial (22%)
Length = 432
Score = 41.6 bits (96), Expect = 9e-05
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = -2
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIF------VGRLGSGGIVSLGIEGIVGNGG 54
+G + GIEG G+E AGNGG +R+G VG VG +G GG + G G G GG
Sbjct: 407 DGILFGIEGILGNE-EAGNGGRVREGSVGKMEGSDGRVGIVGKGGTLP*GSVGFEGKGG 234
>TC207946 similar to UP|Q9LG09 (Q9LG09) F14J16.29, partial (24%)
Length = 538
Score = 39.3 bits (90), Expect = 4e-04
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = -2
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGR---LGSGGIVSLGIEGIVGNGG 54
EG VVG G+FGS+V A +GG + G VG+ VGR +G GG + G G G GG
Sbjct: 366 EGIVVGTVGKFGSKV-AASGGRVTCGTVGM-VGRDGIVGKGGTLP*GSVGSEGKGG 205
>BQ611779 similar to GP|8778315|gb|A F14J16.29 {Arabidopsis thaliana},
partial (30%)
Length = 445
Score = 32.0 bits (71), Expect = 0.068
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -1
Query: 4 KVVGIEGRF--GSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
KV GI R+ G EV GG R G+ GI VG IV++GIEG++GN G
Sbjct: 391 KVRGIN*RYF*GLEV---EGGGDRKGMEGIVVG------IVNVGIEGMLGNEG 260
>BQ253093
Length = 421
Score = 28.9 bits (63), Expect = 0.57
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = -2
Query: 12 FGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIE 47
FG + G D +VGI RLG+G + GI+
Sbjct: 393 FGGRLLQFGDGSFTDDVVGIVA*RLGAGSLTGCGID 286
>AI440914
Length = 344
Score = 28.5 bits (62), Expect = 0.75
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = -2
Query: 2 EGKVVGIEGRFGSEVTA----GNG-GMLRDGIVGIFVGRLGSGGIVSLGI-EGIVGNGG 54
EGK G+EG G VT GNG G+ DG G G G G+V G EG+ G+GG
Sbjct: 193 EGKGEGVEGDGGEGVTGVVGEGNGEGVAGDG--GECEGE-GVTGVVGEGNGEGVAGDGG 26
Score = 26.6 bits (57), Expect = 2.8
Identities = 19/52 (36%), Positives = 24/52 (45%), Gaps = 3/52 (5%)
Frame = -2
Query: 5 VVGIEGRFGSEVTAGNGGMLRDGIVGIFVGR--LGSGG-IVSLGIEGIVGNG 53
V G+ G E G+GG G+VG G G GG G+ G+VG G
Sbjct: 211 VTGVVGEGKGEGVEGDGGEGVTGVVGEGNGEGVAGDGGECEGEGVTGVVGEG 56
>TC226993 homologue to UP|GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehydratase
(GDP-D-mannose dehydratase) (GMD) , partial (94%)
Length = 1388
Score = 28.5 bits (62), Expect = 0.75
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 1 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI 41
+ G+VV + G G E A GG+ G+V + G +G GI
Sbjct: 402 LSGEVVDLVGEDGVEPAAEGGGVGEIGVVELHAGLVGVVGI 280
>TC226995 similar to UP|GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehydratase
(GDP-D-mannose dehydratase) (GMD) , partial (59%)
Length = 679
Score = 27.7 bits (60), Expect = 1.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI 41
G+VV + G G E A GG+ G+V + G +G GI
Sbjct: 295 GEVVDLVGEDGVEPAAEGGGVGEIGVVELHAGLVGVVGI 179
Score = 26.2 bits (56), Expect = 3.7
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Frame = -1
Query: 5 VVGIEGRFGSEVTAGNGGMLRDGIVGIF--VGRLGSGG-IVSL----GIEGIVGNGG 54
VVG G G E G GG G+VG VG +G GG +V L G+E GG
Sbjct: 406 VVGDVGAIGLE*AEGAGGDDVGGVVGDLE*VGDVGLGGEVVDLVGEDGVEPAAEGGG 236
>TC218985 similar to UP|HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (35%)
Length = 598
Score = 26.9 bits (58), Expect = 2.2
Identities = 16/35 (45%), Positives = 18/35 (50%)
Frame = -2
Query: 5 VVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSG 39
V G EG+ G V GNGG G G GR+ SG
Sbjct: 402 VFGSEGKAGGGVETGNGGGGGSGGAGGERGRVRSG 298
>TC203407 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(AtAGP4) (AT5g10430/F12B17_220), partial (50%)
Length = 966
Score = 26.6 bits (57), Expect = 2.8
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Frame = -1
Query: 3 GKVVGIEGRFGSEVT-AGNG-GMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
G+ G E G+ V AG G G+ G V G GG+ G+ G+VG G
Sbjct: 423 GEAAGEEAGVGAAVGGAGAGVGVAAGGGVAAGGGVAAGGGVAGGGVAGVVGAG 265
>TC207437 similar to UP|O81922 (O81922) Proline-rich protein, partial (65%)
Length = 1179
Score = 25.8 bits (55), Expect = 4.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 17 TAGNGGMLRDGIVGIFVGRLGSGGIVS-LGIEGIVGNGG 54
T G GG+ G G G+ G+GG S LG G +G G
Sbjct: 640 TTGGGGVGCGGHTGTGAGQTGTGGGHSGLGFSGSLGFSG 524
>TC205172 similar to UP|DX_DROME (Q23985) Deltex protein, partial (4%)
Length = 579
Score = 25.4 bits (54), Expect = 6.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 13 GSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
G A +L DG+V SGG++SLG+ G NG
Sbjct: 274 GKTTLAVASSLLLDGVVS-------SGGLMSLGVLGSHNNG 173
>AI507725 weakly similar to GP|15021746|gb| root nodule extensin {Pisum
sativum}, partial (29%)
Length = 197
Score = 25.4 bits (54), Expect = 6.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGS 38
+G+E + TA G+ + G +G+ VGR+ S
Sbjct: 141 IGLEEXWTCTATASEVGVEKSGXLGVRVGRVSS 43
>TC205629 similar to UP|Q9LEX1 (Q9LEX1) CaLB protein (At3g61050), partial (92%)
Length = 1766
Score = 25.0 bits (53), Expect = 8.3
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSG-----GIVSLGI---EGIVGNG 53
E K + G GS + A +G + +VG VG +G+G G+V GI G+VG+G
Sbjct: 1135 ERKKLKEAGMIGSTMDALDGAV---SVVGSGVGLVGTGVVAGAGLVGSGIGAGAGLVGSG 1305
>AI900422
Length = 373
Score = 25.0 bits (53), Expect = 8.3
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -3
Query: 1 MEGKVVGI--EGRFGSEVTAGNGGMLRDGIVG--IFVGRLGSGGIVSLGIEGIVGNGG 54
+EG VG+ G G +V G DG+V I V +G GG+V +VG GG
Sbjct: 260 VEGAPVGVAERGFEGPDVFC*EGAEGGDGVVRGRIIVVGIGGGGVVV-----VVGGGG 102
>TC208794 homologue to UP|O82260 (O82260) Expressed protein, partial (15%)
Length = 813
Score = 25.0 bits (53), Expect = 8.3
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 7/37 (18%)
Frame = -1
Query: 2 EGKVVGIEGRFGSE-------VTAGNGGMLRDGIVGI 31
+G + GI+ G VT+G GG+ +GIVGI
Sbjct: 438 DGAIAGIDSEGGKAKTDPGLLVTSGLGGLGLEGIVGI 328
>TC204059 similar to UP|Q94ES3 (Q94ES3) Root nodule extensin (Fragment),
partial (96%)
Length = 853
Score = 25.0 bits (53), Expect = 8.3
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = -3
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGI 49
EG+V +E A G++ G +G+ VGR+ S + +G+ GI
Sbjct: 284 EGRVSSLEEEEMGTCRAS*VGVVESGRLGVGVGRVSS---LEVGVRGI 150
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.152 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,738,115
Number of Sequences: 63676
Number of extensions: 17948
Number of successful extensions: 177
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of query: 56
length of database: 12,639,632
effective HSP length: 32
effective length of query: 24
effective length of database: 10,602,000
effective search space: 254448000
effective search space used: 254448000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC144517.14