BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144516.7 - phase: 0
(261 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204841 similar to UP|Q9LQL8 (Q9LQL8) F5D14.17 protein, partial... 424 e-119
TC204839 similar to UP|Q9LQL8 (Q9LQL8) F5D14.17 protein, partial... 390 e-109
TC204843 similar to UP|Q9LQL8 (Q9LQL8) F5D14.17 protein, partial... 239 1e-63
TC204842 similar to UP|Q9LQL8 (Q9LQL8) F5D14.17 protein, partial... 229 1e-60
TC204840 UP|Q9ZRD9 (Q9ZRD9) GMFP4 (Fragment), complete 174 3e-44
CF809091 112 2e-25
TC209883 weakly similar to GB|AAO64917.1|29029076|BT005982 At4g2... 92 2e-19
TC209787 weakly similar to GB|AAO64917.1|29029076|BT005982 At4g2... 53 1e-07
TC209884 weakly similar to GB|AAO64917.1|29029076|BT005982 At4g2... 50 8e-07
BU082733 40 0.001
TC234893 similar to UP|Q940P5 (Q940P5) At2g20740/F5H14.29, parti... 38 0.005
TC216687 similar to UP|Q8L8A8 (Q8L8A8) Transcription activator, ... 31 0.65
TC216688 similar to UP|Q8L8A8 (Q8L8A8) Transcription activator, ... 30 1.4
TC219322 weakly similar to GB|CAA16569.1|2827561|ATT12H17 predic... 29 1.9
TC232264 weakly similar to UP|Q941E1 (Q941E1) At1g66760/F4N21_11... 29 2.5
TC219081 weakly similar to UP|Q94AX6 (Q94AX6) AT3g23280/K14B15_1... 27 7.2
AW780591 weakly similar to PIR|S40488|S4048 plastocyanin b'' - c... 27 7.2
TC234178 27 9.4
TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete 27 9.4
BU764632 similar to GP|29837178|dbj P0034A04.18 {Oryza sativa (j... 27 9.4
>TC204841 similar to UP|Q9LQL8 (Q9LQL8) F5D14.17 protein, partial (91%)
Length = 1302
Score = 424 bits (1089), Expect = e-119
Identities = 212/288 (73%), Positives = 231/288 (79%), Gaps = 28/288 (9%)
Frame = +1
Query: 2 VCCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDS 61
+ CRG WECLLKL NFILT+TGLAIVGYGIYL V F+KASDDD TP ISPVS DS
Sbjct: 118 MACRGCWECLLKLFNFILTLTGLAIVGYGIYLFVEFSKASDDDN-----TPAISPVSDDS 282
Query: 62 ALIQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCI------------ 109
ALIQ GRP+LMAVSLS++ FD LP+AWFIYLFIG+G VLF++SCFGCI
Sbjct: 283 ALIQLGRPVLMAVSLSNDFFDNLPRAWFIYLFIGIGVVLFLISCFGCIGAATRNGCCLSC 462
Query: 110 ----------------AFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVI 153
AF+FFDK+WKE+IPTDKTG+FD IYGFL ENW+IV+WVALGIVI
Sbjct: 463 YSILVALLILVELGCAAFIFFDKNWKEQIPTDKTGEFDAIYGFLIENWNIVKWVALGIVI 642
Query: 154 FEALLFLLALIVRAVNRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRP 213
FEALLFLLALIVRA NRPADYDSD+E INPRQQVRQPLLN A P +GLPVAGT DQRP
Sbjct: 643 FEALLFLLALIVRAANRPADYDSDEEFINPRQQVRQPLLNRPAASPATGLPVAGTMDQRP 822
Query: 214 NRNDAWSTRMREKYGLDTSEFTYNPSESQRFQQANSQPTEEKSRCTIM 261
+RNDAWSTRMREKYGLDTSEFTYNPSES RFQQ NSQPTEEKSRCTIM
Sbjct: 823 SRNDAWSTRMREKYGLDTSEFTYNPSESNRFQQVNSQPTEEKSRCTIM 966
>TC204839 similar to UP|Q9LQL8 (Q9LQL8) F5D14.17 protein, partial (94%)
Length = 1262
Score = 390 bits (1001), Expect = e-109
Identities = 198/288 (68%), Positives = 216/288 (74%), Gaps = 28/288 (9%)
Frame = +1
Query: 2 VCCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDS 61
+ CRG WECLLKLLNFILT+ GLA+VGYGIYL V + K D+ V D
Sbjct: 175 MACRGCWECLLKLLNFILTLAGLAMVGYGIYLFVEYNKTPDNTLT----------VGDDQ 324
Query: 62 ALIQFGRPMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIA----------- 110
L+Q GRPML+AVSLS++ D LPKAWFIYLFIG+GAVLFV+SCFGCIA
Sbjct: 325 TLVQLGRPMLVAVSLSNSFLDDLPKAWFIYLFIGIGAVLFVISCFGCIAALTRNGCCLSF 504
Query: 111 -----------------FLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVI 153
F+FFDKSWKEEIPTDKTGDFDMIYGFLRENW+IVRWVALGIVI
Sbjct: 505 YSVLVLLLILVELGCAAFIFFDKSWKEEIPTDKTGDFDMIYGFLRENWNIVRWVALGIVI 684
Query: 154 FEALLFLLALIVRAVNRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRP 213
FEALLF+LALIVRA NRP +YDSD+E INPRQQ RQPLL NR AGP SG P GT DQRP
Sbjct: 685 FEALLFVLALIVRAANRPTEYDSDEEYINPRQQARQPLL-NRPAGPVSGAPATGTLDQRP 861
Query: 214 NRNDAWSTRMREKYGLDTSEFTYNPSESQRFQQANSQPTEEKSRCTIM 261
+RNDAWSTRMREKYGLDTSEFTYNPSES R+QQ NSQPTEE SRC IM
Sbjct: 862 SRNDAWSTRMREKYGLDTSEFTYNPSESHRYQQVNSQPTEEGSRCAIM 1005
>TC204843 similar to UP|Q9LQL8 (Q9LQL8) F5D14.17 protein, partial (56%)
Length = 636
Score = 239 bits (609), Expect = 1e-63
Identities = 115/141 (81%), Positives = 124/141 (87%)
Frame = +2
Query: 121 EIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIFEALLFLLALIVRAVNRPADYDSDDEL 180
EIP DKTGDFDMIY FLRENW++VRWVALGIVIFEALLF+LALIVRA NRP +YDSD+E
Sbjct: 2 EIPKDKTGDFDMIYEFLRENWNVVRWVALGIVIFEALLFVLALIVRAANRPPEYDSDEEY 181
Query: 181 INPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPNRNDAWSTRMREKYGLDTSEFTYNPSE 240
INPRQQVRQPLL NR AGP SG P GT D+RP+RNDAWS RMREKYGLDTSEFTYNPSE
Sbjct: 182 INPRQQVRQPLL-NRPAGPASGAPATGTLDKRPSRNDAWSARMREKYGLDTSEFTYNPSE 358
Query: 241 SQRFQQANSQPTEEKSRCTIM 261
S R+QQ N QPTEE+SRC IM
Sbjct: 359 SHRYQQVNPQPTEERSRCAIM 421
>TC204842 similar to UP|Q9LQL8 (Q9LQL8) F5D14.17 protein, partial (52%)
Length = 752
Score = 229 bits (584), Expect = 1e-60
Identities = 111/132 (84%), Positives = 119/132 (90%)
Frame = +1
Query: 130 FDMIYGFLRENWDIVRWVALGIVIFEALLFLLALIVRAVNRPADYDSDDELINPRQQVRQ 189
FD IYGFL EN +I++WVALGIVIFEALLFLLALIVRA NRPADYDSD+E INPRQQV+Q
Sbjct: 1 FDAIYGFLIENGNIMKWVALGIVIFEALLFLLALIVRAANRPADYDSDEEFINPRQQVQQ 180
Query: 190 PLLNNRQAGPPSGLPVAGTTDQRPNRNDAWSTRMREKYGLDTSEFTYNPSESQRFQQANS 249
PLLN AGP +G+PVAGT DQRP+RNDAWSTRMREKYGLDTSEFTYNPSES RFQQ NS
Sbjct: 181 PLLNRLPAGPATGIPVAGTIDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESNRFQQVNS 360
Query: 250 QPTEEKSRCTIM 261
QPTEEKSRC IM
Sbjct: 361 QPTEEKSRCAIM 396
>TC204840 UP|Q9ZRD9 (Q9ZRD9) GMFP4 (Fragment), complete
Length = 699
Score = 174 bits (442), Expect = 3e-44
Identities = 85/107 (79%), Positives = 91/107 (84%)
Frame = +2
Query: 155 EALLFLLALIVRAVNRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPN 214
+ALLF+LALIVRA NRP +YDSD+E INPRQQ RQP LN R AGP SG P GT DQRP+
Sbjct: 92 QALLFVLALIVRAANRPTEYDSDEEYINPRQQARQPFLN-RPAGPVSGAPATGTLDQRPS 268
Query: 215 RNDAWSTRMREKYGLDTSEFTYNPSESQRFQQANSQPTEEKSRCTIM 261
RNDAWSTRMREKYGLDTSEFTYNPSES R+QQ NSQPTEE SRC IM
Sbjct: 269 RNDAWSTRMREKYGLDTSEFTYNPSESHRYQQVNSQPTEEGSRCAIM 409
>CF809091
Length = 588
Score = 112 bits (280), Expect = 2e-25
Identities = 55/72 (76%), Positives = 61/72 (84%)
Frame = +2
Query: 155 EALLFLLALIVRAVNRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPN 214
+ALLF+LALIVRA NRP +YDSD+E INPRQQVRQPLL NR AGP SG P GT D+RP+
Sbjct: 341 QALLFVLALIVRAANRPPEYDSDEEYINPRQQVRQPLL-NRPAGPASGAPATGTLDKRPS 517
Query: 215 RNDAWSTRMREK 226
RNDAWS RMREK
Sbjct: 518 RNDAWSARMREK 553
>TC209883 weakly similar to GB|AAO64917.1|29029076|BT005982 At4g28770
{Arabidopsis thaliana;} , partial (36%)
Length = 692
Score = 92.4 bits (228), Expect = 2e-19
Identities = 53/133 (39%), Positives = 78/133 (57%), Gaps = 3/133 (2%)
Frame = +3
Query: 109 IAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVIFEALLFLLALIVRAV 168
+ F+ D W+++IP D TG D + F+ +N D WV + +++ +AL LLALI+RA
Sbjct: 189 VGFIALDSDWEKDIPFDPTGQLDELRAFIEDNIDTCTWVGIAVLVIQALSLLLALILRAT 368
Query: 169 --NRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPNRNDAWSTRMREK 226
+R AD+D +D + R + +PLL N Q G PSG + D N +D WS RMREK
Sbjct: 369 VSSRRADFDYEDG-YDVRGRSWEPLL-NPQPGQPSG---SSKGDNSGNHSDFWSVRMREK 533
Query: 227 YGLDTSE-FTYNP 238
YGL+ + +Y P
Sbjct: 534 YGLNHGDKSSYQP 572
>TC209787 weakly similar to GB|AAO64917.1|29029076|BT005982 At4g28770
{Arabidopsis thaliana;} , partial (11%)
Length = 698
Score = 53.1 bits (126), Expect = 1e-07
Identities = 34/92 (36%), Positives = 47/92 (50%)
Frame = +3
Query: 128 GDFDMIYGFLRENWDIVRWVALGIVIFEALLFLLALIVRAVNRPADYDSDDELINPRQQV 187
G FD F+R N+++ +WV L +V + L LLA+I++A+ YDSDDE
Sbjct: 3 GSFDQFKNFIRSNYEMCKWVGLSLVSVQGLSLLLAMILKALGPHQYYDSDDEYAPD---- 170
Query: 188 RQPLLNNRQAGPPSGLPVAGTTDQRPNRNDAW 219
R PLL N PP + V + NDAW
Sbjct: 171 RVPLLRN---APPHYVVV---DPGYVHGNDAW 248
>TC209884 weakly similar to GB|AAO64917.1|29029076|BT005982 At4g28770
{Arabidopsis thaliana;} , partial (8%)
Length = 510
Score = 50.4 bits (119), Expect = 8e-07
Identities = 36/83 (43%), Positives = 50/83 (59%), Gaps = 4/83 (4%)
Frame = +3
Query: 160 LLALIVRAV--NRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPNRND 217
LLALI+RA R AD+D +D + R + +PLLN Q G PSG + D N +D
Sbjct: 6 LLALILRATVSARRADFDYEDGY-DVRGRSWEPLLNP-QPGQPSG---SSKGDNSGNHSD 170
Query: 218 AWSTRMREKYGLD--TSEFTYNP 238
WS+RMR+KYGL+ +++Y P
Sbjct: 171 FWSSRMRQKYGLNHGGDKYSYQP 239
>BU082733
Length = 435
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/100 (28%), Positives = 45/100 (45%)
Frame = +3
Query: 11 LLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSALIQFGRPM 70
+LK LNF+ GL+I+ Y +++ ++ + P P + P
Sbjct: 105 VLKFLNFLQCFVGLSILLYSLWMF-------NEWDHRVPPDPPLPPA------------- 224
Query: 71 LMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIA 110
L N + LP WFIY F+G+G ++ +S GCIA
Sbjct: 225 -FHFYLKFNSIN-LPAPWFIYDFMGLGILVLCISFLGCIA 338
>TC234893 similar to UP|Q940P5 (Q940P5) At2g20740/F5H14.29, partial (16%)
Length = 402
Score = 37.7 bits (86), Expect = 0.005
Identities = 22/102 (21%), Positives = 43/102 (41%)
Frame = +3
Query: 9 ECLLKLLNFILTVTGLAIVGYGIYLLVAFAKASDDDKPDISPTPDISPVSGDSALIQFGR 68
+ +LKL+N ++ + GLA++ Y +++ + + + + FG
Sbjct: 177 QSILKLVNSVIGMAGLAMILYSAWMIRVWQRKMGE--------------------LPFGH 296
Query: 69 PMLMAVSLSDNIFDKLPKAWFIYLFIGVGAVLFVVSCFGCIA 110
P WFIY+F+G+G V++C G +A
Sbjct: 297 D------------SDYPPPWFIYMFLGLGVAFCVITCLGHVA 386
>TC216687 similar to UP|Q8L8A8 (Q8L8A8) Transcription activator, partial
(12%)
Length = 1025
Score = 30.8 bits (68), Expect = 0.65
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = +1
Query: 216 NDAWSTRMREKYGLDTSEFTYNPSESQRFQQANSQPTEEKSR 257
+D +S+R ++GL TS+ NPSE + F + + E +
Sbjct: 31 SDEYSSRNNNEFGLVTSDSLLNPSEKRSFTSSQKNDSSESQQ 156
>TC216688 similar to UP|Q8L8A8 (Q8L8A8) Transcription activator, partial
(18%)
Length = 1243
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/38 (31%), Positives = 24/38 (62%)
Frame = +2
Query: 220 STRMREKYGLDTSEFTYNPSESQRFQQANSQPTEEKSR 257
S+R ++GL TS+ NP++ + F ++SQ + +S+
Sbjct: 341 SSRNNNEFGLVTSDSLLNPTQKRSFDSSSSQKDDSESQ 454
>TC219322 weakly similar to GB|CAA16569.1|2827561|ATT12H17 predicted protein
{Arabidopsis thaliana;} , partial (37%)
Length = 768
Score = 29.3 bits (64), Expect = 1.9
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 104 SCFGCIAFLFFDKSWKEEIPT 124
SC C++FLF+ KS +E+IP+
Sbjct: 549 SCVLCLSFLFWSKSGQEQIPS 487
>TC232264 weakly similar to UP|Q941E1 (Q941E1) At1g66760/F4N21_11, partial
(58%)
Length = 701
Score = 28.9 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 3 CCRGFWECLLKLLNFILTVTGLAIVGYGIYLLVAFAKAS 41
CC CL+K L F++ + A + +YL++ F K S
Sbjct: 314 CC-----CLVKTLRFLMQLVSTAYTSFQLYLVMLFFKLS 415
>TC219081 weakly similar to UP|Q94AX6 (Q94AX6) AT3g23280/K14B15_17, partial
(27%)
Length = 967
Score = 27.3 bits (59), Expect = 7.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 191 LLNNRQAGPPSGLPVAGTTDQRPNRNDAWSTRMREKYGLDTSEFTYNPSES 241
L NN GPP+ LPVA T+ + + + M+E+ ++ ++ S S
Sbjct: 590 LQNNVPTGPPTALPVAEDTELAMAISASLQSAMQERPPFSDTQPSFEASSS 742
>AW780591 weakly similar to PIR|S40488|S4048 plastocyanin b'' - common
tobacco, partial (79%)
Length = 247
Score = 27.3 bits (59), Expect = 7.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 210 DQRPNRNDAWSTRMREKYGLDTSEFTYN 237
DQ P+ DAW M EKY L+ + TY+
Sbjct: 83 DQIPSVMDAWKIFMSEKYLLNAAGETYS 166
>TC234178
Length = 427
Score = 26.9 bits (58), Expect = 9.4
Identities = 18/52 (34%), Positives = 23/52 (43%)
Frame = +3
Query: 42 DDDKPDISPTPDISPVSGDSALIQFGRPMLMAVSLSDNIFDKLPKAWFIYLF 93
DD P S TP I P + SAL ++ LSD F PK + +F
Sbjct: 258 DDPTPHKSATPSIVPETPMSALFDSEIAIVKCTMLSDPAFMVSPKKFSGQIF 413
>TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete
Length = 932
Score = 26.9 bits (58), Expect = 9.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +1
Query: 44 DKPDI---SPTPDISPVSGDSALIQF 66
D PDI +PTPD+SP + S L F
Sbjct: 61 DSPDIQGEAPTPDLSPANPQSPLSSF 138
>BU764632 similar to GP|29837178|dbj P0034A04.18 {Oryza sativa (japonica
cultivar-group)}, partial (16%)
Length = 421
Score = 26.9 bits (58), Expect = 9.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 81 FDKLPKA-WFIYLFIGVGAVLFVVSCFGCIAFLFFDKSWKEE 121
F +LP W IY+F+ +CF + FLFF ++ +EE
Sbjct: 248 FVELPDG*WVIYMFLAS-------ACFFFLVFLFFSQANREE 352
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,486,038
Number of Sequences: 63676
Number of extensions: 175484
Number of successful extensions: 1279
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of query: 261
length of database: 12,639,632
effective HSP length: 95
effective length of query: 166
effective length of database: 6,590,412
effective search space: 1094008392
effective search space used: 1094008392
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144516.7