BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144515.9 + phase: 0
(207 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224744 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glyco... 35 0.031
TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 33 0.092
TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich gly... 33 0.092
BI892964 similar to PIR|T11622|T116 extensin class 1 precursor -... 33 0.12
BF595364 31 0.35
TC224765 similar to UP|Q09082 (Q09082) Extensin (Class I), parti... 31 0.35
TC226933 similar to UP|Q9LNV5 (Q9LNV5) F22G5.30, partial (5%) 31 0.45
TC204052 homologue to UP|Q39835 (Q39835) Extensin, partial (67%) 31 0.45
CF922341 30 0.59
TC204773 UP|OLE1_SOYBN (P29530) P24 oleosin isoform A (P89), com... 30 0.59
BI971608 30 0.59
BU577461 similar to PIR|T11622|T11 extensin class 1 precursor - ... 30 0.78
CA853919 homologue to PIR|T11622|T11 extensin class 1 precursor ... 30 0.78
AI441847 homologue to PIR|T11622|T11 extensin class 1 precursor ... 30 0.78
AW234586 similar to GP|15450467|gb| At1g12810/F13K23_4 {Arabidop... 30 0.78
TC224723 hydroxyproline-rich glycoprotein 30 0.78
BE474755 30 0.78
BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycopr... 30 0.78
BG652378 similar to PIR|T10863|T108 extensin precursor - kidney ... 30 0.78
CF921275 30 1.0
>TC224744 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (30%)
Length = 592
Score = 34.7 bits (78), Expect = 0.031
Identities = 31/102 (30%), Positives = 45/102 (43%), Gaps = 4/102 (3%)
Frame = +1
Query: 108 GTRLEEAVRDGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAA 167
GT L+ +D V KA+ ASK++ +K K + +S +PI
Sbjct: 94 GTELKVKSKDKYEVVLKAKPFAYASKKHFEECYKPKPSPTPYYY----KSPPPPSPIYIY 261
Query: 168 QMPP--SYPYVPYSQHPFF--PPFYHQYPLPPGQNSLFPFYF 205
+ PP S YV S P PP+Y+Q P PP P+Y+
Sbjct: 262 KSPPPPSPTYVYKSPPPPVKSPPYYYQSPPPPSPKPKPPYYY 387
>TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (58%)
Length = 856
Score = 33.1 bits (74), Expect = 0.092
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 170 PPSYPYV-PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PPSY Y P P PP+Y++ P PP + P+Y+
Sbjct: 26 PPSYYYKSPPPPSPSPPPYYYKSPPPPSPSPPSPYYY 136
Score = 32.0 bits (71), Expect = 0.20
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Frame = +2
Query: 162 APINAAQMPPSYPYV----PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
+P + PPS Y P + P+ PP+Y++ P PP + P+Y+
Sbjct: 92 SPPPPSPSPPSPYYYKSPPPPHKDPYHPPYYYKSPPPPSPSPPPPYYY 235
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y++ P PP + P+Y+
Sbjct: 698 PPPYYYKSPPPPSPSPP-PPYYYKSPPPPSPSPPPPYYY 811
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y++ P PP + P+Y+
Sbjct: 362 PPPYYYKSPPPPSPSPP-PPYYYKSPPPPSPSPPPPYYY 475
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y++ P PP + P+Y+
Sbjct: 602 PPPYYYKSPPPPSPSPP-PPYYYKSPPPPSPSPPPPYYY 715
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y++ P PP + P+Y+
Sbjct: 554 PPPYYYKSPPPPSPSPP-PPYYYKSPPPPSPSPPPPYYY 667
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y++ P PP + P+Y+
Sbjct: 266 PPPYYYKSPPPPSPSPP-PPYYYKSPPPPSPSPPPPYYY 379
Score = 27.3 bits (59), Expect = 5.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y++ P PP + P+Y+
Sbjct: 458 PPPYYYKSPPPPSPSPP-PPYYYKSPPPPDPSPPPPYYY 571
Score = 26.9 bits (58), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +2
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP P P PP+Y++ P PP + P+Y+
Sbjct: 197 PPPSPSPP-------PPYYYKSPPPPSPSPPPPYYY 283
Score = 26.9 bits (58), Expect = 6.6
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFY 204
PP Y Y P S P PP+Y++ P PP S P+Y
Sbjct: 746 PPPYYYKSPPPPSPSPP-PPYYYKSPPPPSPVSHPPYY 856
>TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich glycoprotein
(Fragment), partial (86%)
Length = 688
Score = 33.1 bits (74), Expect = 0.092
Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Frame = +2
Query: 170 PPS-YPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PPS P PY H PP+Y+Q P PP P+Y+
Sbjct: 257 PPSPSPPPPYYYHSPPPPYYYQSPPPPSPTPHPPYYY 367
Score = 29.3 bits (64), Expect = 1.3
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +2
Query: 163 PINAAQMPPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
P++ PS P P P PP+Y++ P PP + P+Y+
Sbjct: 122 PVSPPYHYPSPPPPPSPSPP--PPYYYKSPPPPSPSPPPPYYY 244
Score = 27.3 bits (59), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y+ P PP + P+Y+
Sbjct: 179 PPPYYYKSPPPPSPSPP-PPYYYHSPPPPSPSPPPPYYY 292
>BI892964 similar to PIR|T11622|T116 extensin class 1 precursor - cowpea,
partial (19%)
Length = 320
Score = 32.7 bits (73), Expect = 0.12
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 163 PINAAQMPPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
P + + PP Y P P PP+Y+ P PP + P+Y+
Sbjct: 112 PPSPSPPPPYYYKSPPPPSPSPPPYYYSVPPPPSPSPPSPYYY 240
Score = 29.3 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Frame = +1
Query: 170 PPSYPYVPYSQHPFFP-PFYHQYPLPPGQNSLFPFYF 205
PP Y VP P P P+Y++ P PP + P+Y+
Sbjct: 178 PPYYYSVPPPPSPSPPSPYYYKSPRPPSPSPPPPYYY 288
Score = 28.9 bits (63), Expect = 1.7
Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Frame = +1
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P + PP+Y+ P PP + P+Y+
Sbjct: 34 PPPYYYHSPPPPKEHVHPPYYYHSPPPPSPSPPPPYYY 147
>BF595364
Length = 418
Score = 31.2 bits (69), Expect = 0.35
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 168 QMPPSYPYVPYSQHPFFPPFYHQYPLPPGQNSL 200
Q P+ P+VP +HP PPF HQ PLP ++ L
Sbjct: 80 QEAPNLPFVP--RHPQ-PPFQHQIPLPSHRHHL 169
>TC224765 similar to UP|Q09082 (Q09082) Extensin (Class I), partial (46%)
Length = 708
Score = 31.2 bits (69), Expect = 0.35
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPYVPYSQHPFF--PPFYHQYPLPPGQNSLFPFYF 205
PPS YV S P PP+Y+Q P PP P+Y+
Sbjct: 141 PPSPTYVYKSPPPPVKSPPYYYQSPPPPSPKPKPPYYY 254
Score = 27.7 bits (60), Expect = 3.8
Identities = 14/44 (31%), Positives = 20/44 (44%), Gaps = 1/44 (2%)
Frame = +3
Query: 163 PINAAQMPPSYPYVPYSQHPF-FPPFYHQYPLPPGQNSLFPFYF 205
P + PP Y P P PP+Y+ P PP + P+Y+
Sbjct: 315 PPSPVPKPPYYYKSPPPPSPVPKPPYYYHSPPPPSPSPPPPYYY 446
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y++ P PP + P+Y+
Sbjct: 429 PPPYYYKSPPPPSPSPP-PPYYYKSPPPPSPSPPPPYYY 542
Score = 27.3 bits (59), Expect = 5.0
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 163 PINAAQMPPSYPYVPYSQHPF-FPPFYHQYPLPPGQNSLFPFYF 205
P + PP Y P P PP+Y+Q P PP P+Y+
Sbjct: 219 PPSPKPKPPYYYKSPPPPSPKPKPPYYYQSPPPPSPVPKPPYYY 350
>TC226933 similar to UP|Q9LNV5 (Q9LNV5) F22G5.30, partial (5%)
Length = 652
Score = 30.8 bits (68), Expect = 0.45
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Frame = +1
Query: 171 PSYPYVPYSQHPFFPPF--------YHQYPLPPGQNSLFP 202
P P P H ++PP+ YHQYP PP ++ P
Sbjct: 148 PMMPPQPGQYHQYYPPYGYMPPPPPYHQYPPPPYNAAVAP 267
>TC204052 homologue to UP|Q39835 (Q39835) Extensin, partial (67%)
Length = 1083
Score = 30.8 bits (68), Expect = 0.45
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y +P +H PP+Y+ P PP + P+Y+
Sbjct: 492 PPPYYYHSLPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 605
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + P+Y+
Sbjct: 252 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 365
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + P+Y+
Sbjct: 204 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 317
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + P+Y+
Sbjct: 348 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 461
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + P+Y+
Sbjct: 396 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 509
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + P+Y+
Sbjct: 156 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 269
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + P+Y+
Sbjct: 540 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 653
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + P+Y+
Sbjct: 300 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 413
Score = 26.9 bits (58), Expect = 6.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 173 YPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
Y P +H PP+Y+ P PP + P+Y+
Sbjct: 123 YSSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 221
>CF922341
Length = 675
Score = 30.4 bits (67), Expect = 0.59
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 4 AAEWYTSLSKDDVHTFDELAAAFKSHYGFN 33
A WYT+L VH++ +L AF Y +N
Sbjct: 556 AVTWYTNLEPSRVHSWKDLMVAFVRQYQYN 645
>TC204773 UP|OLE1_SOYBN (P29530) P24 oleosin isoform A (P89), complete
Length = 1048
Score = 30.4 bits (67), Expect = 0.59
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = -2
Query: 163 PINAAQMPPSYPYVPYSQHPFFPPFYHQYPLP 194
P++ Q+PP YP VP S++P PP + PLP
Sbjct: 663 PLHPLQLPPLYP-VPCSEYPAQPP-WSSAPLP 574
>BI971608
Length = 423
Score = 30.4 bits (67), Expect = 0.59
Identities = 17/39 (43%), Positives = 18/39 (45%), Gaps = 1/39 (2%)
Frame = +2
Query: 170 PPSYPYV-PYSQHPFFPPFYHQYPLPPGQNSLFPFYFLK 207
PP Y YV P P PP YH PP + PFY K
Sbjct: 92 PPPYHYVSPPPPSPSPPPPYHYTSPPPPSPAPAPFYIYK 208
>BU577461 similar to PIR|T11622|T11 extensin class 1 precursor - cowpea,
partial (24%)
Length = 354
Score = 30.0 bits (66), Expect = 0.78
Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Frame = +1
Query: 163 PINAAQMPPSYPYV-PYSQHPFFPPFYHQYPLPPGQNSLFPFYFLK 207
P +++ PP Y Y P+S P PP Y+ PP + P Y+ K
Sbjct: 133 PPSSSSPPPQYYYKSPFSPSPSPPPHYYY*SPPPPSPAPHPPYYYK 270
Score = 29.6 bits (65), Expect = 1.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 170 PPSYPYVPYSQHPFFPP-FYHQYPLPPGQNSLFPFYFLK 207
PP Y + P P PP +Y++ P PP +S P Y+ K
Sbjct: 58 PPYYYHSPPPPSPSPPPPYYYKSPPPPSSSSPPPQYYYK 174
Score = 28.1 bits (61), Expect = 2.9
Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Frame = +1
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P + PP+Y+ P PP + P+Y+
Sbjct: 7 PPPYYYNSPPPPKEDAQPPYYYHSPPPPSPSPPPPYYY 120
>CA853919 homologue to PIR|T11622|T11 extensin class 1 precursor - cowpea,
partial (30%)
Length = 454
Score = 30.0 bits (66), Expect = 0.78
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 171 PSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PS P Y + P PP+Y++ P PP + P+Y+
Sbjct: 159 PSPPPPYYYKSPPPPPYYYKSPPPPSPSPPPPYYY 263
Score = 29.6 bits (65), Expect = 1.0
Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 9/51 (17%)
Frame = +3
Query: 164 INAAQMPPSYPYVPYSQH---------PFFPPFYHQYPLPPGQNSLFPFYF 205
INA P P PY H P PP+Y++ P PP + P+Y+
Sbjct: 39 INAPPPPSPVPKPPYYYHSPPPPSPSPP--PPYYYKSPPPPSPSPPPPYYY 185
Score = 28.5 bits (62), Expect = 2.3
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = +3
Query: 163 PINAAQMPPSYPYVPYSQHPFFPP-FYHQYPLPPGQNSLFPFYF 205
P + + PP Y + P P PP +Y+ P PP + P+Y+
Sbjct: 228 PPSPSPPPPYYYHSPPPPSPSPPPPYYYHSPPPPSPSPPPPYYY 359
>AI441847 homologue to PIR|T11622|T11 extensin class 1 precursor - cowpea,
partial (29%)
Length = 429
Score = 30.0 bits (66), Expect = 0.78
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = +2
Query: 162 APINAAQMPPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
AP PP PY Y + P PP+Y++ P PP S P+Y+
Sbjct: 233 APYYYKSPPPPPPY--YYKSPPPPPYYYKSPPPP---SPTPYYY 349
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +2
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PPS Y P PP+Y++ P PP S P+Y+
Sbjct: 149 PPSPTPYYYKSPPPPPPYYYKSPPPP---SPAPYYY 247
Score = 26.6 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = +2
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PPS Y P PP+Y++ P PP P+Y+
Sbjct: 221 PPSPAPYYYKSPPPPPPYYYKSPPPP------PYYY 310
Score = 26.6 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = +1
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PPS Y P PP+Y++ P PP P+Y+
Sbjct: 7 PPSPAPYYYKSPPPPPPYYYKSPPPP------PYYY 96
>AW234586 similar to GP|15450467|gb| At1g12810/F13K23_4 {Arabidopsis
thaliana}, partial (32%)
Length = 411
Score = 30.0 bits (66), Expect = 0.78
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 163 PINAAQMPPSY-PYVPYSQHPFFPPFYHQYPLPPGQN 198
P Q PP Y PY P + F H YPLPP N
Sbjct: 94 PSAPPQPPPGYVPYPPPQYEGYQGYFNHGYPLPPPPN 204
>TC224723 hydroxyproline-rich glycoprotein
Length = 2345
Score = 30.0 bits (66), Expect = 0.78
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = +1
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP P P PP+Y+Q P PP S P+Y+
Sbjct: 1030 PPPSPSPP-------PPYYYQSPPPPSPTSHPPYYY 1116
Score = 29.3 bits (64), Expect = 1.3
Identities = 16/56 (28%), Positives = 28/56 (49%)
Frame = +1
Query: 150 VSAGAGQSMATVAPINAAQMPPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
+S S++ + P N+A+ P Y P PP+Y+ P PP ++ P+Y+
Sbjct: 661 LSLSLSLSLSLLVP-NSARAPYYYKSPPPPSPSPPPPYYYHSPPPPKEHVHPPYYY 825
Score = 29.3 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 19/39 (47%), Gaps = 3/39 (7%)
Frame = +1
Query: 170 PPSYPY---VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H P +YH P PP + P+Y+
Sbjct: 760 PPPYYYHSPPPPKEHVHPPYYYHSPPPPPSPSPPPPYYY 876
Score = 29.3 bits (64), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = +1
Query: 163 PINAAQMPPSYPYVPYSQHPFFPP-FYHQYPLPPGQNSLFPFYF 205
P + + PP Y + P P PP +Y+ P PP + P+Y+
Sbjct: 889 PPSPSPPPPYYYHSPPPPSPSPPPPYYYHSPPPPSPSPPSPYYY 1020
Score = 28.9 bits (63), Expect = 1.7
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Frame = +1
Query: 163 PINAAQMPPSYPYVPYSQHPFFP-PFYHQYPLPPGQNSLFPFYF 205
P + + PP Y + P P P P+Y++ P PP + P+Y+
Sbjct: 937 PPSPSPPPPYYYHSPPPPSPSPPSPYYYKSPPPPSPSPPPPYYY 1068
Score = 28.9 bits (63), Expect = 1.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 170 PPSYPYV---PYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P S P PP+Y+Q P PP P+Y+
Sbjct: 573 PPPYYYKSPPPPSPSPP-PPYYYQSPPPPSPTPHPPYYY 460
Score = 27.3 bits (59), Expect = 5.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 170 PPSY---PYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y P P S P PP+Y++ P PP + P+Y+
Sbjct: 811 PPYYYHSPPPPPSPSPP-PPYYYKSPPPPSPSPPPPYYY 924
>BE474755
Length = 293
Score = 30.0 bits (66), Expect = 0.78
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = +1
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP P P PP+Y+Q P PP S P+Y+
Sbjct: 64 PPPSPSPP-------PPYYYQSPPPPSPTSHPPYYY 150
>BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycoprotein (clone
Hyp2.13) - kidney bean (fragment), partial (38%)
Length = 422
Score = 30.0 bits (66), Expect = 0.78
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP P P + PP+Y++ P PP S P+Y+
Sbjct: 286 PPPSPSPPPPYYYKSPPYYYKSPPPPSPVSHPPYYY 393
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = +1
Query: 163 PINAAQMPPSYPYVPYSQHPFFPP-FYHQYPLPPGQNSLFPFYF 205
P + + PP Y P P PP +Y++ P PP + P+Y+
Sbjct: 49 PPSPSPPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPPPYYY 180
Score = 26.9 bits (58), Expect = 6.6
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = +1
Query: 163 PINAAQMPPSYPYVPYSQHPFFPP-FYHQYPLPPGQNSLFPFYF 205
P + + PP Y P P PP +Y++ P PP + P+Y+
Sbjct: 145 PPSPSPPPPYYYKSPPPPSPSPPPHYYYKSPPPPDPSPPPPYYY 276
Score = 26.6 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +1
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP P P PP+Y++ P PP + P+Y+
Sbjct: 238 PPPDPSPP-------PPYYYRSPPPPSPSPPPPYYY 324
>BG652378 similar to PIR|T10863|T108 extensin precursor - kidney bean,
partial (14%)
Length = 361
Score = 30.0 bits (66), Expect = 0.78
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = +3
Query: 170 PPSYPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP +PY HP P YH P PP + P+Y+
Sbjct: 201 PPVHPYPHPHPHPHPPYVYHSPPPPPKK----PYYY 296
>CF921275
Length = 403
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + P+Y+
Sbjct: 156 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 269
Score = 26.9 bits (58), Expect = 6.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 173 YPYVPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
Y P +H PP+Y+ P PP + P+Y+
Sbjct: 123 YSSPPPPKHSPPPPYYYHSPPPPKHSPPPPYYY 221
Score = 26.6 bits (57), Expect = 8.6
Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Frame = +3
Query: 170 PPSYPY--VPYSQHPFFPPFYHQYPLPPGQNSLFPFYF 205
PP Y Y P +H PP+Y+ P PP + +Y+
Sbjct: 204 PPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPPQYYY 317
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,825,076
Number of Sequences: 63676
Number of extensions: 116503
Number of successful extensions: 1492
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of query: 207
length of database: 12,639,632
effective HSP length: 93
effective length of query: 114
effective length of database: 6,717,764
effective search space: 765825096
effective search space used: 765825096
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144515.9