BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144515.4 + phase: 0
(292 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO979556 320 6e-88
CO979388 312 1e-85
CO981978 295 2e-80
TC222064 homologue to UP|Q9SVY1 (Q9SVY1) Zinc finger-like protei... 238 7e-79
TC221465 UP|Q8VXK3 (Q8VXK3) WIP1 protein (Fragment), complete 288 3e-78
BM308898 141 3e-34
TC206813 similar to UP|CW14_YEAST (O13547) Covalently-linked cel... 113 1e-25
TC230714 weakly similar to GB|AAO44076.1|28466935|BT004810 At5g2... 103 7e-23
BI471409 98 4e-21
TC206812 87 9e-18
BQ080665 84 1e-16
BI245412 homologue to GP|29028906|gb At2g02080 {Arabidopsis thal... 81 6e-16
TC213366 homologue to UP|Q9SVY1 (Q9SVY1) Zinc finger-like protei... 75 5e-14
BF069705 similar to GP|16226322|gb AT3g45260/F18N11_20 {Arabidop... 74 6e-14
TC222859 homologue to GB|AAO64832.1|29028906|BT005897 At2g02080 ... 73 2e-13
BU084794 69 3e-12
BF068484 homologue to GP|17016848|gb| wsv453 {shrimp white spot ... 67 1e-11
TC218738 66 2e-11
TC233614 66 2e-11
BG362868 homologue to PIR|T46147|T461 zinc finger protein - Arab... 65 5e-11
>CO979556
Length = 792
Score = 320 bits (819), Expect = 6e-88
Identities = 149/240 (62%), Positives = 173/240 (72%), Gaps = 12/240 (5%)
Frame = -1
Query: 60 QIEGFEFKEEKEIVALHIGLPH------------DTKKYLDDEKKFFHFKEEEEEEKASK 107
++E E VALHIGLP + + D ++ H E+ +
Sbjct: 786 ELEDDEDGSTSVTVALHIGLPSPSAAEMASVLSSSSHEITDKDQHGDHGAAEDSSSAGFR 607
Query: 108 KTFQRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPA 167
++WIPTP+QIL+GP QF+C +C KTFNRYNNMQMHMWGHGS++RKGP+SLRGTQP
Sbjct: 606 LNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPT 427
Query: 168 AMLRLPCYCCVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDW 227
MLRLPCYCC GC+NNI+HPRAKPLKDFRTLQTHYKRKHG KPFMCRKCGK FAV+GDW
Sbjct: 426 GMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDW 247
Query: 228 RTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHRRLSSIDDRVFEEEKECVTGSEED 287
RTHEKNCGKLWYC CGSDFKHKRSLKDHI++FG GH ID FEEE E + E+D
Sbjct: 246 RTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAY-GIDG--FEEEDEPASEVEQD 76
>CO979388
Length = 750
Score = 312 bits (799), Expect = 1e-85
Identities = 136/176 (77%), Positives = 153/176 (86%)
Frame = -2
Query: 112 RFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLR 171
++WIPTP+QIL+GP QF+C +C KTFNRYNNMQMHMWGHGS++RKGP+SLRGTQP MLR
Sbjct: 629 QYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLR 450
Query: 172 LPCYCCVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHE 231
LPCYCC GC+NNI+HPRAKPLKDFRTLQTHYKRKHG KPFMCRKCGK FAV+GDWRTHE
Sbjct: 449 LPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHE 270
Query: 232 KNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHRRLSSIDDRVFEEEKECVTGSEED 287
KNCGKLWYC CGSDFKHKRSLKDHI++FG GH ID FEEE+E + E+D
Sbjct: 269 KNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAY-GIDG--FEEEEEPASEVEQD 111
>CO981978
Length = 795
Score = 295 bits (754), Expect = 2e-80
Identities = 130/145 (89%), Positives = 135/145 (92%)
Frame = -2
Query: 144 QMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPRAKPLKDFRTLQTHY 203
QMHMWGHGSEFRKGPDSL+GTQPAAMLRLPCYCC QGCKNNINHPRAKPLKDFRTLQTHY
Sbjct: 794 QMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHY 615
Query: 204 KRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGH 263
KRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGH
Sbjct: 614 KRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGH 435
Query: 264 RRLSSIDDRVFEEEKECVTGSEEDE 288
+ FE+EKEC+TGS+EDE
Sbjct: 434 NPHPPFE--AFEDEKECITGSDEDE 366
>TC222064 homologue to UP|Q9SVY1 (Q9SVY1) Zinc finger-like protein (WIP2
protein), partial (43%)
Length = 720
Score = 238 bits (608), Expect(2) = 7e-79
Identities = 107/147 (72%), Positives = 122/147 (82%), Gaps = 5/147 (3%)
Frame = +3
Query: 97 KEEEEEEKASKKTFQR-----FWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHG 151
KE++++ AS+ + R +WIPTPAQIL+ QF+C +C KTFNRYNNMQMHMWGHG
Sbjct: 6 KEDKKDTVASEYSXTRINKGQYWIPTPAQILIXXTQFSCPLCFKTFNRYNNMQMHMWGHG 185
Query: 152 SEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKP 211
S++RKGP+S RGTQP AMLRLPCYCC GCKNNI+HPRAKPLKDFRTLQTHYKRKHG KP
Sbjct: 186 SQYRKGPESXRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKP 365
Query: 212 FMCRKCGKTFAVKGDWRTHEKNCGKLW 238
FMCRKC K FAV+GDWRTHEK KLW
Sbjct: 366 FMCRKCCKAFAVRGDWRTHEK---KLW 437
Score = 73.6 bits (179), Expect(2) = 7e-79
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = +1
Query: 232 KNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHR 264
KNCGKLWYC+CGSDFKHKRSLKDHI++FG GH+
Sbjct: 427 KNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHK 525
>TC221465 UP|Q8VXK3 (Q8VXK3) WIP1 protein (Fragment), complete
Length = 1175
Score = 288 bits (736), Expect = 3e-78
Identities = 138/242 (57%), Positives = 165/242 (68%), Gaps = 6/242 (2%)
Frame = +3
Query: 36 QNETIQFFPILSANFSKDEEREVPQIEG-----FEFKEEKEIVALHIGLP-HDTKKYLDD 89
QN+ +Q P+LS+ E + Q + + E VALHIGLP H + +
Sbjct: 27 QNQ-LQPLPLLSSFLGSSPEESLLQNQNENPNACHAQVEDVTVALHIGLPDHSSGSNSTN 203
Query: 90 EKKFFHFKEEEEEEKASKKTFQRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWG 149
F + A+ + +WIPT QIL+G F+C +C+KTFNRYNN+QMHMWG
Sbjct: 204 NHGFVN---------ATTQVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWG 356
Query: 150 HGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGT 209
HGS++R+GPDSL+ T P +L LPCYCC +GCKNNI H RAKPLKDFRTLQTHYKRKHG+
Sbjct: 357 HGSQYRRGPDSLKRTHPRPLLDLPCYCCARGCKNNIEHARAKPLKDFRTLQTHYKRKHGS 536
Query: 210 KPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHRRLSSI 269
KPF CRKCGK AVKGDWRTHEKNCGK W C CGSDFKHKRSLKDHI++FG GH SS
Sbjct: 537 KPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFSSF 716
Query: 270 DD 271
D
Sbjct: 717 SD 722
>BM308898
Length = 437
Score = 141 bits (356), Expect = 3e-34
Identities = 58/66 (87%), Positives = 62/66 (93%)
Frame = +2
Query: 198 TLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIR 257
TLQTHYKRKHG KP+MCRKC KTFAVKGDWRTHEKNCGK+WYC CGSDFKHKRSLKDHI+
Sbjct: 209 TLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIK 388
Query: 258 SFGKGH 263
+FG GH
Sbjct: 389 AFGHGH 406
Score = 134 bits (336), Expect = 6e-32
Identities = 54/78 (69%), Positives = 68/78 (86%)
Frame = +3
Query: 130 CSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPR 189
C +C+K+FNRYNN+QMHMWGHGS++RKGPDSL+GTQP+AMLRLPC+CC GCK+NI+HPR
Sbjct: 3 CHVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPR 182
Query: 190 AKPLKDFRTLQTHYKRKH 207
A+PLKDF H R++
Sbjct: 183 ARPLKDFIIPFKHTTREN 236
>TC206813 similar to UP|CW14_YEAST (O13547) Covalently-linked cell wall
protein 14 precursor (Inner cell wall protein), partial
(6%)
Length = 1214
Score = 113 bits (282), Expect = 1e-25
Identities = 60/157 (38%), Positives = 85/157 (53%), Gaps = 7/157 (4%)
Frame = +1
Query: 122 LVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKG-----PDSLRGTQPAAMLRLPCYC 176
++ P C+IC K F R N++MHM GHG +++ P G++P + R C
Sbjct: 748 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDKYKTPAALAKPHKETGSEPKLIKRYSCPY 927
Query: 177 CVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCG-KTFAVKGDWRTHEKNCG 235
GCK N +H + +PLK ++ HYKR H K + C +C K F+V D +THEK+CG
Sbjct: 928 A--GCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCG 1101
Query: 236 K-LWYCTCGSDFKHKRSLKDHIRSFGKGHRRLSSIDD 271
K W C+CG+ F K L HI F +GH +DD
Sbjct: 1102KDKWLCSCGTTFSRKDKLFGHIALF-QGHTPAIPLDD 1209
>TC230714 weakly similar to GB|AAO44076.1|28466935|BT004810 At5g22890
{Arabidopsis thaliana;} , partial (58%)
Length = 1049
Score = 103 bits (258), Expect = 7e-23
Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 9/177 (5%)
Frame = +1
Query: 120 QILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCC-V 178
+IL M F C IC K F R +N++MHM HG +F+ + ++ A R + C
Sbjct: 298 EILAEHMHF-CEICGKGFRRDSNLRMHMRAHGEQFKTVEALAKPSETTAQRRATRFSCPF 474
Query: 179 QGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKT-FAVKGDWRTHEKNCG-- 235
+GC N H R +PLK ++ H+KR H K + C +C K F+V D R+H K+CG
Sbjct: 475 EGCNRNKLHRRFRPLKSVICVKNHFKRSHCPKMYTCERCRKKHFSVLSDLRSHAKHCGGE 654
Query: 236 KLWYCTCGSDFKHKRSLKDHIRSFGKGHRRLSSIDD-----RVFEEEKECVTGSEED 287
W CTCG+ F K L HI F GH + D+ +V E++++ + +E +
Sbjct: 655 ARWKCTCGTTFSRKDKLFGHIALF-DGHAPALACDEEGKGKQVVEDDEDPMLMNESE 822
>BI471409
Length = 424
Score = 98.2 bits (243), Expect = 4e-21
Identities = 51/110 (46%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Frame = +3
Query: 51 SKDEEREVPQI---EGFEFKEEKEIVALHIGLPHDTKKYLDDEKKFFHFKEEEEEEKASK 107
+K++E+E+ I +E VALH+GLP T D + ++EE+ AS+
Sbjct: 93 NKEKEKELLSIMSSNNNSLDDETVTVALHLGLPSTTATSSADLTSNMYSEKEEKATFASE 272
Query: 108 KTFQR-----FWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGS 152
+ R +WIPTPAQIL+GP +F+C +C KTFNRYNNMQMHMWGHGS
Sbjct: 273 YSPTRINKGQYWIPTPAQILIGPTRFSCPLCCKTFNRYNNMQMHMWGHGS 422
>TC206812
Length = 814
Score = 87.0 bits (214), Expect = 9e-18
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +3
Query: 163 GTQPAAMLRLPCYCCVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCG-KTF 221
G++P + R C GCK N +H + +PLK ++ HYKR H K + C +C K F
Sbjct: 36 GSEPXLIKRYSCPYA--GCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKF 209
Query: 222 AVKGDWRTHEKNCGK-LWYCTCGSDFKHKRSLKDHIRSFGKGHRRLSSIDD 271
+V D +THEK+CGK W C+CG+ F K L HI F +GH +DD
Sbjct: 210 SVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALF-QGHTPAIPLDD 359
>BQ080665
Length = 425
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/114 (37%), Positives = 61/114 (52%)
Frame = -2
Query: 122 LVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGC 181
LV +F C ICNK F R N+Q+H GH ++ LR T +R Y C +
Sbjct: 325 LVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL---KLRTTTD---VRKRVYVCPE-- 170
Query: 182 KNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCG 235
+ ++H A+ L D ++ H+ RKHG K + C KC K +AV+ DW+ H K CG
Sbjct: 169 PSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICG 8
>BI245412 homologue to GP|29028906|gb At2g02080 {Arabidopsis thaliana},
partial (31%)
Length = 664
Score = 80.9 bits (198), Expect = 6e-16
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Frame = -1
Query: 132 ICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPRAK 191
+C K F R N+Q+H GH ++ + + + L C C ++H ++
Sbjct: 547 VCTKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYL-----CPEPTC---VHHDPSR 392
Query: 192 PLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWY-CTCGSDFKHKR 250
L D ++ HY RKHG K + C KC K +AV+ DW+ H K CG Y C CG+ F +
Sbjct: 391 ALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRD 212
Query: 251 SLKDH 255
S H
Sbjct: 211 SFITH 197
>TC213366 homologue to UP|Q9SVY1 (Q9SVY1) Zinc finger-like protein (WIP2
protein), partial (16%)
Length = 897
Score = 74.7 bits (182), Expect = 5e-14
Identities = 49/138 (35%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Frame = +1
Query: 27 SSSSSSSTTQNETIQFFPILSANFSKDEEREVPQIE-------GFEFKEEKEIVALHIGL 79
S SS QNE S+N +++E + +++ G + EE VALHIGL
Sbjct: 259 SLKSSEQHQQNEP-------SSNVVEEKEEDKNKVDNNKHHESGEDGDEETVTVALHIGL 417
Query: 80 PHDTKKYLD------DEKKFFHFKEEEEEEKASKKTFQ------RFWIPTPAQILVGPMQ 127
P D E+EE SK ++WIPTP+QIL+GP Q
Sbjct: 418 PRMDTSSSDLGPSRVVSTTCMEISEKEEVNMISKHPLDNRLNKGQYWIPTPSQILIGPTQ 597
Query: 128 FACSICNKTFNRYNNMQM 145
F C +C+KTFNRYNN+Q+
Sbjct: 598 FPCPVCSKTFNRYNNLQV 651
>BF069705 similar to GP|16226322|gb AT3g45260/F18N11_20 {Arabidopsis
thaliana}, partial (22%)
Length = 406
Score = 74.3 bits (181), Expect = 6e-14
Identities = 35/87 (40%), Positives = 47/87 (53%), Gaps = 1/87 (1%)
Frame = +1
Query: 170 LRLPCYCCVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRT 229
+R Y C + K ++H A+ L D ++ HY RKHG K + C KC K +AV+ DW+
Sbjct: 16 VRKKVYICPE--KTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKA 189
Query: 230 HEKNCGKLWY-CTCGSDFKHKRSLKDH 255
H K CG Y C CG+ F K S H
Sbjct: 190 HTKTCGTREYKCDCGNLFSRKDSFITH 270
>TC222859 homologue to GB|AAO64832.1|29028906|BT005897 At2g02080 {Arabidopsis
thaliana;} , partial (22%)
Length = 454
Score = 72.8 bits (177), Expect = 2e-13
Identities = 37/109 (33%), Positives = 53/109 (47%)
Frame = +2
Query: 122 LVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGC 181
L+ +F C +CNK F R N+Q+H GH P L+ R C C
Sbjct: 149 LMATNRFLCEVCNKGFQREQNLQLHRRGHNL-----PWKLKQKTNKEPKRKVYLCPEPTC 313
Query: 182 KNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTH 230
++H ++ L D ++ HY RKHG K + C KC K +AV+ DW+ H
Sbjct: 314 ---VHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAH 451
>BU084794
Length = 420
Score = 68.9 bits (167), Expect = 3e-12
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 185 INHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWY-CTCG 243
++H ++ L D ++ HY RKHG K + C KC K +AV+ DW+ H K CG Y C CG
Sbjct: 8 VHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCG 187
Query: 244 SDFKHKRSLKDH 255
+ F K S H
Sbjct: 188 TLFSRKDSFITH 223
>BF068484 homologue to GP|17016848|gb| wsv453 {shrimp white spot syndrome
virus} [Shrimp white spot syndrome virus], partial (10%)
Length = 366
Score = 66.6 bits (161), Expect = 1e-11
Identities = 46/93 (49%), Positives = 51/93 (54%), Gaps = 23/93 (24%)
Frame = +3
Query: 1 MECDVEDNN--------FIEWLKPSNSSKSYLTSS-----------SSSSSSTTQN---- 37
MEC+VEDN FIEWLKP +S SYL +S SSSS S TQN
Sbjct: 66 MECNVEDNKNLYLHAPTFIEWLKPCSSPNSYLNNSNTISYSSSSSPSSSSFSLTQNEFVQ 245
Query: 38 ETIQFFPILSANFSKDEEREVPQIEGFEFKEEK 70
ETIQF PILS SKDE+ + FE KEEK
Sbjct: 246 ETIQFLPILSEKASKDED------QSFEVKEEK 326
>TC218738
Length = 719
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/72 (45%), Positives = 42/72 (57%), Gaps = 2/72 (2%)
Frame = +1
Query: 202 HYKRKHGTKPFMCRKCG-KTFAVKGDWRTHEKNCGK-LWYCTCGSDFKHKRSLKDHIRSF 259
HYKR H K + C +C K F+V D +THEK+CGK W C+CG+ F K L HI F
Sbjct: 1 HYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALF 180
Query: 260 GKGHRRLSSIDD 271
+GH +DD
Sbjct: 181 -QGHAPAIPLDD 213
>TC233614
Length = 460
Score = 65.9 bits (159), Expect = 2e-11
Identities = 39/126 (30%), Positives = 59/126 (45%), Gaps = 2/126 (1%)
Frame = +1
Query: 132 ICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPRAK 191
ICN+ F R N+QMH H K P L + + + C C ++H
Sbjct: 4 ICNQGFQRDQNLQMHRRRH-----KVPWKLLKRETPVVKKRVFVCPEPSC---LHHDPCH 159
Query: 192 PLKDFRTLQTHYKRKHGT-KPFMCRKCGKTFAVKGDWRTHEKNCGKLWY-CTCGSDFKHK 249
L D ++ H++RKH K ++C +C K +AV+ D++ H K CG + C CG F
Sbjct: 160 ALGDLVGIKKHFRRKHNNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRV 339
Query: 250 RSLKDH 255
S +H
Sbjct: 340 ESFIEH 357
>BG362868 homologue to PIR|T46147|T461 zinc finger protein - Arabidopsis
thaliana, partial (21%)
Length = 482
Score = 64.7 bits (156), Expect = 5e-11
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +1
Query: 169 MLRLPCYCCVQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWR 228
++R Y C + ++H ++ L D ++ H+ RKHG K + C KC K +AV DW+
Sbjct: 13 LVRKRVYVCPE--PTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVHSDWK 186
Query: 229 THEKNCGKLWY-CTCGSDFKHKRSLKDH 255
H K CG Y C CG+ F + S H
Sbjct: 187 AHSKICGTREYKCDCGTLFSRRDSFITH 270
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,887,873
Number of Sequences: 63676
Number of extensions: 292496
Number of successful extensions: 3289
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 2551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2949
length of query: 292
length of database: 12,639,632
effective HSP length: 96
effective length of query: 196
effective length of database: 6,526,736
effective search space: 1279240256
effective search space used: 1279240256
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144515.4