BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144513.3 - phase: 0 /pseudo
(1115 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226021 similar to UP|Q9LRZ0 (Q9LRZ0) Arabidopsis thaliana geno... 457 e-133
TC210853 similar to UP|Q9LRZ0 (Q9LRZ0) Arabidopsis thaliana geno... 435 e-122
TC226022 363 e-100
BE330615 293 4e-79
TC203333 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (54%) 289 5e-78
TC226024 similar to UP|Q9LRZ0 (Q9LRZ0) Arabidopsis thaliana geno... 243 3e-64
BI315725 177 3e-44
TC213137 158 1e-38
BM499238 125 5e-33
TC226869 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (40%) 112 1e-24
AI736622 91 2e-18
TC216518 weakly similar to UP|Q9LW87 (Q9LW87) Coatomer protein c... 62 1e-09
TC207354 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat prot... 58 3e-08
AI461113 47 8e-07
TC232938 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (21%) 52 1e-06
TC207353 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat prot... 51 3e-06
TC230628 homologue to UP|Q9XIJ3 (Q9XIJ3) T10O24.21, partial (41%) 46 8e-05
TC205059 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-... 45 1e-04
TC204561 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-... 45 1e-04
TC229098 similar to PIR|T46032|T46032 WD-40 repeat regulatory pr... 45 2e-04
>TC226021 similar to UP|Q9LRZ0 (Q9LRZ0) Arabidopsis thaliana genomic DNA,
chromosome 3, TAC clone:K20I9, partial (29%)
Length = 1585
Score = 457 bits (1176), Expect(2) = e-133
Identities = 270/424 (63%), Positives = 299/424 (69%), Gaps = 1/424 (0%)
Frame = +1
Query: 690 VKWKGAPLQGLLKFLMELILRVEMRRNLGLWKM*WIELNHGSSSKLWILPTVD*LPCLTA 749
VKWK APL GLL+FLMELI E++RN LWKM* IELNHG+ K WIL V LPCL A
Sbjct: 109 VKWKEAPLSGLLQFLMELIPWAEVQRNQELWKM**IELNHGNYLKFWILSNVGQLPCLRA 288
Query: 750 QILRARLFDFYIQILVLVFWHLGQMVFRSCGSGLGMIRILVGRRLLVLFRNIGNPTVVFL 809
QIL ARL DFYIQ L+LVFW L QMV RS G+GL + RIL+GR L +LF IGNPT+VFL
Sbjct: 289 QILPARLSDFYIQTLLLVFWPLVQMVSRSFGNGLAVNRILLGRLLPMLFHCIGNPTMVFL 468
Query: 810 *PMMFLVSTLKKQFLALHSQRMIHMLCLHVVERFLYLT**HSR**QHSWHHLPPLRFWLS 869
* M+ STLKKQ+LAL SQ+M H LCL VVERFLYLT**HSR**QHS L L LS
Sbjct: 469 *LMISRASTLKKQYLALPSQKMTHTLCLPVVERFLYLT**HSR**QHSCRRLLLLPS*LS 648
Query: 870 TLKITTS*PLGWRIQLFIFIMLEWMR*NQN*RVTKSEFLV*LFQPILASWFHLVLMLIFA 929
+ITT PLGWRIQ F IM E MR*NQN*+ T+S LV*LF PIL W HLVLMLIF
Sbjct: 649 IPRITTLLPLGWRIQPFTSIMSESMR*NQN*KATRSVLLV*LFLPILTYWSHLVLMLIFV 828
Query: 930 CGALIHGRKENQFLYNYLWGRLLLVKLVYSSIQTNSDYWYPMRLSWQYMMPQRWNALDSG 989
CG HGRKENQF Y+Y LLV YSSI N YW MRL+WQYMMP RWNA SG
Sbjct: 829 CGV*THGRKENQFQYSYPQESHLLVIHEYSSILINFAYW*FMRLNWQYMMPLRWNAFGSG 1008
Query: 990 FHKMFCLLLYHMQLILATVS*FLLHFAMATLGFLMLTA*D*DVALHHQHTSQQRL*AEAK 1049
F KMFCL Y MQLI ATVS*++ HF M TL FLML A* DV LHHQ+ ++L* E K
Sbjct: 1009 FPKMFCLPPYRMQLIPATVS*YMRHFVMPTLAFLMLIA*GSDVVLHHQYACHRQL*VEVK 1188
Query: 1050 LCILLLWQLIHSSPTNLPLD*LMGQ*K**SPLNQRESGDPVHLWIME**MVGQ-HHLQAT 1108
+CILL I + +L L * M K**+ NQR SG+P HLW ME *MVGQ HHLQ
Sbjct: 1189 VCILLWLLPIL*NLISLLLG*RMDLSK**NRTNQRVSGEPPHLWTMEY*MVGQDHHLQQA 1368
Query: 1109 THPI 1112
T P+
Sbjct: 1369 TTPL 1380
Score = 38.1 bits (87), Expect(2) = e-133
Identities = 18/22 (81%), Positives = 19/22 (85%)
Frame = +3
Query: 667 LRTVETPAFEALRSPIESAANK 688
LRT+ETPAFEALRSPIES K
Sbjct: 3 LRTIETPAFEALRSPIESTPIK 68
>TC210853 similar to UP|Q9LRZ0 (Q9LRZ0) Arabidopsis thaliana genomic DNA,
chromosome 3, TAC clone:K20I9, partial (20%)
Length = 712
Score = 435 bits (1118), Expect = e-122
Identities = 200/225 (88%), Positives = 215/225 (94%), Gaps = 1/225 (0%)
Frame = +2
Query: 365 VGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP-SVSRVTWSLDGSFV 423
VGSNNGEI+LWEL +RE+LVSKPFKIWD+SACSLPFQAA VKD P SVSRVTWS DGSFV
Sbjct: 2 VGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGSFV 181
Query: 424 GVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLCVVTCGDDKLIKVWD 483
G+AFTKHLIH+YA GSNEL QR+E+DAH+GGVNDLAFAHPNKQLC+VTCGDDKLIKVWD
Sbjct: 182 GIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWD 361
Query: 484 LTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHWC 543
L GR+LF+FEGHEAPVYSICPHHKENIQFIFSTA+DGKIKAWLYDNMGSRVDYDAPGHWC
Sbjct: 362 LNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWC 541
Query: 544 TTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKK 588
TTMLYSADGTRLFSCGTSKDG+SFL EWNESEGAIKRTYNGF+KK
Sbjct: 542 TTMLYSADGTRLFSCGTSKDGESFLGEWNESEGAIKRTYNGFKKK 676
Score = 30.4 bits (67), Expect = 4.6
Identities = 19/44 (43%), Positives = 22/44 (49%)
Frame = +3
Query: 556 FSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQ 599
F G K FLV + + + RKKS GVVQFDTTQ
Sbjct: 579 FLVGQVKMESLFLVNGMKVKEPSREHTMDSRKKSTGVVQFDTTQ 710
>TC226022
Length = 1066
Score = 363 bits (932), Expect = e-100
Identities = 204/268 (76%), Positives = 217/268 (80%), Gaps = 3/268 (1%)
Frame = +1
Query: 849 *HSR**QHSWHHLPPLRFWLSTLKITTS*PLGWRIQLFIFIMLEWMR*NQN*RVTKSEFL 908
*HSR**QHS HH PL FWLSTLKITTS*PLGWRIQ F +IMLEWMR*N N*RV KSE L
Sbjct: 1 *HSR**QHSCHHPLPLPFWLSTLKITTS*PLGWRIQQFTYIMLEWMR*NLN*RVIKSELL 180
Query: 909 V*LFQPILASWFHLVLMLIFACGALIHGRKENQFLYNYLWGRLLLVKLVYSSIQTNSDYW 968
V* FQP+L SWFHLVLML F G LIHGRKENQFLYNY RLLLV LV SSI T S YW
Sbjct: 181 V*PFQPVLTSWFHLVLMLNFVYGVLIHGRKENQFLYNYPQERLLLVTLVCSSI*TKSGYW 360
Query: 969 YPMRLSWQYMMPQRWNALDSGFHKMFCLLLYHMQLILATVS*FLLHFAMATLGFLMLTA* 1028
+PMRLSWQYMMP RW AL SGFHKMF LL YHMQLI ATVS*++LHFAMATLGFLMLTA*
Sbjct: 361 WPMRLSWQYMMPLRWIALGSGFHKMFWLLPYHMQLIPATVS*YMLHFAMATLGFLMLTA* 540
Query: 1029 D*DVALHHQHTSQ-QRL*AEAKLCILLLWQLIHSSPTNLPLD*LMGQ*K**SPLNQRESG 1087
D*DV LH+ HT Q+L*A L ILL +LIH +PTNL LD* MG *K**S +NQ+ SG
Sbjct: 541 D*DVVLHYPHTFHLQQL*AGINLRILLPLRLIHWNPTNLLLD*QMGP*K**SLVNQKVSG 720
Query: 1088 DPVHLWIME**MVGQH-HL-QATTHPIR 1113
+PVHLWIME * VGQH HL QAT+HP R
Sbjct: 721 EPVHLWIMEY*TVGQHQHL*QATSHPTR 804
>BE330615
Length = 466
Score = 293 bits (749), Expect = 4e-79
Identities = 133/151 (88%), Positives = 145/151 (95%), Gaps = 1/151 (0%)
Frame = +2
Query: 405 VKDTP-SVSRVTWSLDGSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAH 463
VKD+P S SRVTWSLDG+FVGVAFTKHLIH+YAY GSNELAQR+E+DAHIGGVNDLAFAH
Sbjct: 14 VKDSPISASRVTWSLDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAH 193
Query: 464 PNKQLCVVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIK 523
NKQLC+VTCGDDKLIKVWD+ GR+LFNFEGHEA VYSICPHHKE+IQF+FSTA+DGKIK
Sbjct: 194 LNKQLCIVTCGDDKLIKVWDIAGRKLFNFEGHEAAVYSICPHHKESIQFVFSTAIDGKIK 373
Query: 524 AWLYDNMGSRVDYDAPGHWCTTMLYSADGTR 554
AWLYDNMGSRVDYDAPGHWCTTMLYSADG+R
Sbjct: 374 AWLYDNMGSRVDYDAPGHWCTTMLYSADGSR 466
>TC203333 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (54%)
Length = 2258
Score = 289 bits (739), Expect = 5e-78
Identities = 140/216 (64%), Positives = 162/216 (74%), Gaps = 29/216 (13%)
Frame = +1
Query: 494 GHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGT 553
GHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWLYDN+GSRVDY+APG WCTTM YSADGT
Sbjct: 7 GHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 186
Query: 554 RLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDSQIKF 613
RLFSCGTSKDG+S +VEWNESEGA+KRTY GFRK+S GVVQFDTT+NRFLAAG+D IKF
Sbjct: 187 RLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 366
Query: 614 WDMDNVNPLTSTEAEGGLQ-----------------------------GLPHLRFNKEGN 644
WDMDNV LT+ +A+GGL P +RFNK+G
Sbjct: 367 WDMDNVQLLTTVDADGGLPVS*LFYCKLESWTLEIVVAC*LLPNLKL*ASPRIRFNKDGT 546
Query: 645 LLAVTTADNGFKILANAGGLRSLRTVETPAFEALRS 680
LLAV+ +NG KILAN G+R LRT+E +EA R+
Sbjct: 547 LLAVSANENGIKILANGDGIRLLRTLENSLYEASRA 654
Score = 91.7 bits (226), Expect = 2e-18
Identities = 93/272 (34%), Positives = 121/272 (44%), Gaps = 2/272 (0%)
Frame = +2
Query: 760 YIQILVLVFWHLGQMVFRSCGSGLGMIRILVGRRLLVLFRNIGNPTVVFL*PMMFLVSTL 819
YIQI V++FWH QM F G+G M + R LL + GN V * M L++ L
Sbjct: 926 YIQIQVMLFWH*HQMPFTYSGNGSEMSVTHLARPLLPCSLSCGNHRVAS**QMTLLIAIL 1105
Query: 820 KKQFLALHSQRMIHMLCLHVVERFLYLT**HSR**QHSWHHLPPLRFWLSTLKITTS*PL 879
+ + AL +M HM CLH R+L L ** R *Q S H F LS L+IT
Sbjct: 1106 RMLYPALRCPKMTHM*CLHQEGRYLCLI**LLRL*QLSCLHHLRQPF*LSILRITILSL* 1285
Query: 880 GWRIQLFIFIMLEWMR*NQN*RVTKSEFLV*LFQPILASWFHLVLMLIFACGALIHGRKE 939
W I LF +IM MR N + E LV L FHL LML F G L+ G+
Sbjct: 1286 AWMIPLFKYIMSVLMRLKVNSKGILKELLVLLSLMY*MY*FHLELMLRFVFGILMDGKSR 1465
Query: 940 NQFLYNYLWGRLLLVKL--VYSSIQTNSDYWYPMRLSWQYMMPQRWNALDSGFHKMFCLL 997
+ ++L G VY+ I+ W M+LS +M SG + L
Sbjct: 1466 SLDSCSFLLGEHHQHSQIPVYNFIKIKYSSWLYMKLSSPFMKQLN*KD*SSGSRETH-LH 1642
Query: 998 LYHMQLILATVS*FLLHFAMATLGFLMLTA*D 1029
Y MQL S ++ F +L+L D
Sbjct: 1643 QYRMQLSHVIASWYMPAF*TQQSVYLVLQTSD 1738
>TC226024 similar to UP|Q9LRZ0 (Q9LRZ0) Arabidopsis thaliana genomic DNA,
chromosome 3, TAC clone:K20I9, partial (13%)
Length = 525
Score = 243 bits (620), Expect = 3e-64
Identities = 133/170 (78%), Positives = 140/170 (82%)
Frame = +1
Query: 712 EMRRNLGLWKM*WIELNHGSSSKLWILPTVD*LPCLTAQILRARLFDFYIQILVLVFWHL 771
+MRRNL L KM IELNHGS KLW+L V *LPCLT QIL ARLFDFYIQ LVLVFWHL
Sbjct: 1 KMRRNLEL*KME*IELNHGSCLKLWMLSNVG*LPCLTVQILPARLFDFYIQTLVLVFWHL 180
Query: 772 GQMVFRSCGSGLGMIRILVGRRLLVLFRNIGNPTVVFL*PMMFLVSTLKKQFLALHSQRM 831
QMVFRSCGSGL + +I +GR+L VLF +IGNPTVVFL* MM VSTL K FLALHSQRM
Sbjct: 181 VQMVFRSCGSGLVVNKIPMGRQLPVLFHSIGNPTVVFL*LMMSRVSTLMKLFLALHSQRM 360
Query: 832 IHMLCLHVVERFLYLT**HSR**QHSWHHLPPLRFWLSTLKITTS*PLGW 881
HMLCLHVVERF YLT**HSR**QHS HH PPL F LSTLKI TS*PLGW
Sbjct: 361 THMLCLHVVERFRYLT**HSR**QHSCHHHPPLPF*LSTLKIITS*PLGW 510
>BI315725
Length = 421
Score = 177 bits (448), Expect = 3e-44
Identities = 101/138 (73%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
Frame = +3
Query: 977 YMMPQRWNALDSGFHKMFCLLLYHMQLILATVS*FLLHFAMATLGFLMLTA*D*DVALHH 1036
YMMP RW AL SGFHKMF LL YHMQLI ATVS*F+LHF MATLGFLM TA*D*D LH+
Sbjct: 3 YMMPLRWIALGSGFHKMFWLLPYHMQLIPATVS*FMLHFLMATLGFLMPTA*D*DAVLHY 182
Query: 1037 QHTSQ-QRL*AEAKLCILLLWQLIHSSPTNLPLD*LMGQ*K**SPLNQRESGDPVHLWIM 1095
HT Q+L* L ILL +LIHSSPTNLPLD* MG *K**S +NQ+ SG+PVHLWIM
Sbjct: 183 PHTFHLQQL*VGTSLFILLSLRLIHSSPTNLPLD*QMGP*K**SLVNQKVSGEPVHLWIM 362
Query: 1096 E**MVGQHH--LQATTHP 1111
E * VGQHH QATTHP
Sbjct: 363 EY*TVGQHHHLQQATTHP 416
>TC213137
Length = 461
Score = 158 bits (399), Expect = 1e-38
Identities = 87/154 (56%), Positives = 101/154 (65%)
Frame = +3
Query: 149 KLIEANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCTPSN 208
+LIEANPLFRDKL FP LK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLF+DHSC N
Sbjct: 12 RLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPN 191
Query: 209 GPLAPTPVNLPVAAVAKPAAYTSLGVGAHGPFPPAAATANANALAGWMANASVSSSVQAA 268
G AP+P N P+ A P A +GAHGPF P A LAGWM+N + + +
Sbjct: 192 GARAPSPANNPLLG-ALPKAGGFPPLGAHGPFQPTPAPV-PTPLAGWMSNPTTVAHAAVS 365
Query: 269 VVTASTIPVPHNQVSILKRPITPSTTPGMVEYQS 302
A + P + + LK P TP T P V+Y S
Sbjct: 366 GGGAIGLGAP-SMPAALKHPRTPPTNPS-VDYPS 461
>BM499238
Length = 493
Score = 125 bits (313), Expect(2) = 5e-33
Identities = 60/78 (76%), Positives = 65/78 (82%), Gaps = 2/78 (2%)
Frame = +3
Query: 150 LIEANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSC--TPS 207
LIEANPLFRDKL FPTLK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLF+DHSC
Sbjct: 9 LIEANPLFRDKLQFPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQVQP 188
Query: 208 NGPLAPTPVNLPVAAVAK 225
NG AP+PV P+ A+
Sbjct: 189 NGARAPSPVTNPLMGAAQ 242
Score = 35.8 bits (81), Expect(2) = 5e-33
Identities = 22/50 (44%), Positives = 24/50 (48%)
Frame = +2
Query: 234 VGAHGPFPPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPHNQVS 283
+GAHGPF P A A +LAGWMAN S PVPH S
Sbjct: 263 LGAHGPFQPTPA-ALPTSLAGWMANPS---------------PVPHPSAS 364
>TC226869 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (40%)
Length = 1800
Score = 112 bits (279), Expect = 1e-24
Identities = 114/309 (36%), Positives = 146/309 (46%), Gaps = 2/309 (0%)
Frame = +3
Query: 760 YIQILVLVFWHLGQMVFRSCGSGLGMIRILVGRRLLVLFRNIGNPTVVFL*PMMFLVSTL 819
+IQI L FW QM+F S G+G M L+GR L V N GN V + * M+ ++ T
Sbjct: 468 FIQIRGLRFWLWQQMLFTSFGNGREMSGTLLGRPLQVFNHNYGNHLVEY**LMI*VILTQ 647
Query: 820 KKQFLALHSQRMIHMLCLHVVERFLYLT**HSR**QHSWHHLPPLRFWLSTLKITTS*PL 879
+ LH QRM HMLCL E+FLY **H R *Q S H L F LK T L
Sbjct: 648 RMLCHVLHCQRMTHMLCLLQGEKFLYSI**HLRQ*QLSCHLHQLLHFLHFILKTTILLLL 827
Query: 880 GWRIQLFIFIMLEWMR*NQN*RVTKSEFLV*LFQPILASWFHLVLMLIFACGALIHGRKE 939
WR + IMLEW R +*RV + E LV F +HL L L GA + G+ +
Sbjct: 828 AWRTLPYKSIMLEWTRSKLS*RVIRRELLVLPFLMF*MCLYHLELTLSCVFGAQMDGKSK 1007
Query: 940 NQFLYNY-LWGRLLLVKLVYSS-IQTNSDYWYPMRLSWQYMMPQRWNALDSGFHKMFCLL 997
Y + L L++++ S+ I T YW M+ Q WN + S FH + +
Sbjct: 1008 QVNSYKCPVDDHLRLLQILGSNFI*TRHIYWLFMKPK*PCTRHQSWN-V*SSFH-LGKPI 1181
Query: 998 LYHMQLILATVS*FLLHFAMATLGFLMLTA*D*DVALHHQHTSQQRL*AEAKLCILLLWQ 1057
HM I VS ++ M L FL D*DV + S Q +A CILL
Sbjct: 1182 QSHMLHIHVIVSQYM*ALKMEVLAFLPSQRSD*DVE*INLLISIQ---IQA*ECILL*LL 1352
Query: 1058 LIHSSPTNL 1066
I +P NL
Sbjct: 1353 HIPPNPINL 1379
Score = 77.8 bits (190), Expect = 2e-14
Identities = 43/70 (61%), Positives = 51/70 (72%)
Frame = +2
Query: 617 DNVNPLTSTEAEGGLQGLPHLRFNKEGNLLAVTTADNGFKILANAGGLRSLRTVETPAFE 676
DN N LTS EA+GGL P +RFNK+G LLAV+T D+G KILANA G+R LRTVE F+
Sbjct: 2 DNTNMLTSVEADGGLLASPCIRFNKDGILLAVSTNDSGVKILANAEGIRLLRTVENRTFD 181
Query: 677 ALRSPIESAA 686
A R + SAA
Sbjct: 182 ASR--VASAA 205
>AI736622
Length = 414
Score = 91.3 bits (225), Expect = 2e-18
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +2
Query: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKV 45
MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKV
Sbjct: 278 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKV 412
>TC216518 weakly similar to UP|Q9LW87 (Q9LW87) Coatomer protein complex, beta
prime; beta'-COP protein, partial (29%)
Length = 1189
Score = 62.0 bits (149), Expect = 1e-09
Identities = 79/321 (24%), Positives = 127/321 (38%), Gaps = 7/321 (2%)
Frame = +1
Query: 350 VTSMDFHPSHQTLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP 409
V S+D HP+ +LL G +G IS+W + SL + V+
Sbjct: 103 VKSVDMHPTEPWILL-GLYSGTISIWNYQTKTE------------EKSLKISESPVRSAK 243
Query: 410 SVSRVTWSLDGSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLC 469
++R W + A IH+Y Y+ ++ VE H + LA HP
Sbjct: 244 FIARENW------IVAATDDKNIHVYNYDKMEKI---VEFAEHKDYIRSLA-VHPVLPY- 390
Query: 470 VVTCGDDKLIKVWDLT-GRRLF-NFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLY 527
V++ DD+++K+W+ G + NFEGH V + + K+ F S ++DG +K W
Sbjct: 391 VISASDDQVLKLWNWRKGWSCYENFEGHSHYVMQVAFNPKDPSTFA-SASLDGTLKIWSL 567
Query: 528 DNMGSRVDYDAPGHW----CTTMLYSADGTRLFSCGTSKDGDSFLVE-WNESEGAIKRTY 582
D+ S ++ GH C + D L S D + + W+ +T
Sbjct: 568 DS--SAPNFTLEGHQKGVNCVDYFITNDKQYLLS-----GSDDYTAKVWDYHSRNCVQTL 726
Query: 583 NGFRKKSAGVVQFDTTQNRFLAAGEDSQIKFWDMDNVNPLTSTEAEGGLQGLPHLRFNKE 642
G + + A EDS +K WD V T GL+ + + + K
Sbjct: 727 EGHENNVTAICAHPELPI-IITASEDSTVKIWDA--VTYRLQTTLNFGLKRVWSIGYKKG 897
Query: 643 GNLLAVTTADNGFKILANAGG 663
+ LA D GF I+ + G
Sbjct: 898 SSQLAF-GCDQGFLIVKISEG 957
>TC207354 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat protein 5,
partial (57%)
Length = 1124
Score = 57.8 bits (138), Expect = 3e-08
Identities = 52/210 (24%), Positives = 93/210 (43%), Gaps = 4/210 (1%)
Frame = +1
Query: 410 SVSRVTWSLDGSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLC 469
+VS V +S DG+ + A + I++ S L + H G++DLA++ + +C
Sbjct: 142 AVSCVKFSNDGTLLASASLDKTLIIWS---SATLTLCHRLVGHSEGISDLAWSSDSHYIC 312
Query: 470 VVTCGDDKLIKVWDLT--GRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLY 527
+ DD+ +++WD T G + GH+ V+ C + +I S + D IK W
Sbjct: 313 --SASDDRTLRIWDATVGGGCIKILRGHDDAVF--CVNFNPQSSYIVSGSFDETIKVW-- 474
Query: 528 DNMGSRVDYDAPGHW--CTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGF 585
D + + GH T++ Y+ DG + S S DG + W+ G + +T
Sbjct: 475 DVKTGKCVHTIKGHTMPVTSVHYNRDGNLIIS--ASHDGSCKI--WDTETGNLLKTLIED 642
Query: 586 RKKSAGVVQFDTTQNRFLAAGEDSQIKFWD 615
+ + +F LAA + +K W+
Sbjct: 643 KAPAVSFAKFSPNGKLILAATLNDTLKLWN 732
Score = 35.0 bits (79), Expect = 0.18
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 470 VVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDN 529
+V +D + +WDL + + EGH V S+ H EN A D ++ W+ D+
Sbjct: 827 IVGGSEDHCVYIWDLQQKLVQKLEGHTDTVISVTCHPTENKIASAGLAGDRTVRVWVQDS 1006
>AI461113
Length = 413
Score = 47.0 bits (110), Expect(2) = 8e-07
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 899 N*RVTKSEFLV*LFQPILASWFHLVLML 926
N*RV KSE LV* FQP+L SWFHLVLML
Sbjct: 3 N*RVIKSELLV*PFQPVLTSWFHLVLML 86
Score = 25.4 bits (54), Expect(2) = 8e-07
Identities = 11/29 (37%), Positives = 14/29 (47%)
Frame = +1
Query: 928 FACGALIHGRKENQFLYNYLWGRLLLVKL 956
F C I G EN N+ W LL++ L
Sbjct: 97 FNCSPFIQGDSENLIHNNFFWRSLLVICL 183
>TC232938 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (21%)
Length = 738
Score = 52.4 bits (124), Expect = 1e-06
Identities = 24/44 (54%), Positives = 33/44 (74%)
Frame = +3
Query: 637 LRFNKEGNLLAVTTADNGFKILANAGGLRSLRTVETPAFEALRS 680
+RFNK+G LLAV+ +NG KILANA G+R LRT+E ++ R+
Sbjct: 6 IRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRT 137
Score = 44.3 bits (103), Expect = 3e-04
Identities = 45/116 (38%), Positives = 57/116 (48%), Gaps = 1/116 (0%)
Frame = +2
Query: 760 YIQILVLVFWHLGQMVFRSCGSGLGMIRILVGRRLLVLFRNIGNPTVVFL*PMMFLVSTL 819
YI I V++ W QM F G+G M I + R L V + GN V * M L++
Sbjct: 392 YILIQVMLSWR*LQMPFICSGNGSEMTVIQLARPLPVCNPSCGNLLVAS**LMTLLITIP 571
Query: 820 KKQFLALHSQRMIHMLCLHVVERFLYLT**HSR**QHS-WHHLPPLRFWLSTLKIT 874
+ AL ++MI M C H RFL ** R *+HS HL L F L L+IT
Sbjct: 572 RMPSPALLCRKMILM*CQHQEGRFLCSI**LLRQ*RHSCLRHLQQL-FLLFILRIT 736
>TC207353 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat protein 5,
partial (58%)
Length = 898
Score = 50.8 bits (120), Expect = 3e-06
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Frame = +3
Query: 470 VVTCGDDKLIKVWDL-TGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAW--- 525
+V+ D+ IKVWD+ TG+ + +GH PV S+ H+ + I S + DG K W
Sbjct: 39 IVSGSFDETIKVWDVKTGKCVHTIKGHTMPVTSV--HYNRDGTLIISASHDGSCKIWDTG 212
Query: 526 LYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGF 585
+ + + ++ AP + +S +G + T D L WN G + Y+G
Sbjct: 213 TGNLLKTLIEDKAPA--VSFAKFSPNG-KFILAATLND---TLKLWNYGSGKFLKIYSGH 374
Query: 586 RKKSAGVVQ-FDTTQNRFLAAG-EDSQIKFWDMDNVNPLTSTE 626
+ + F T R++ +G ED + WD+ N + E
Sbjct: 375 VNRVYCITSTFSVTNGRYIVSGSEDRCVYIWDLQAKNMIQKLE 503
Score = 45.1 bits (105), Expect = 2e-04
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Frame = +3
Query: 389 KIWDISACSLPFQAAVVKDTPSVSRVTWSLDGSFVGVAFTKHLIHIYAYNGSNELAQRVE 448
KIWD +L + + P+VS +S +G F+ A + ++ Y GS +
Sbjct: 195 KIWDTGTGNL-LKTLIEDKAPAVSFAKFSPNGKFILAATLNDTLKLWNY-GSGKF----- 353
Query: 449 IDAHIGGVNDL-----AFAHPNKQLCVVTCGDDKLIKVWDLTGRRLFN-FEGHEAPVYSI 502
+ + G VN + F+ N + +V+ +D+ + +WDL + + EGH V S+
Sbjct: 354 LKIYSGHVNRVYCITSTFSVTNGRY-IVSGSEDRCVYIWDLQAKNMIQKLEGHTDTVISV 530
Query: 503 CPHHKENIQFIFSTAVDGKIKAWLYDN 529
H EN A D ++ W+ D+
Sbjct: 531 TCHPTENKIASAGLAGDRTVRVWVQDS 611
>TC230628 homologue to UP|Q9XIJ3 (Q9XIJ3) T10O24.21, partial (41%)
Length = 1119
Score = 46.2 bits (108), Expect = 8e-05
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 7/175 (4%)
Frame = +2
Query: 448 EIDAHIGGVNDLAFAHPNKQLCVVTCGDDKLIKVWDLTGRRLFNF--EGHEAPVYSICPH 505
E D H+G VN + F N++ VT DDK ++VW+ + + + E H + SI H
Sbjct: 263 EYDQHLGAVNTITFVDNNRRF--VTSSDDKSLRVWEFSIPVVIKYISEPHMHSMPSISLH 436
Query: 506 HKENIQFIFSTAVDGKIKAW-----LYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGT 560
N ++ + ++D +I + N R + + +S DG +
Sbjct: 437 --PNANWLAAQSLDNQILIYSTREKFQLNKRKRFGGHIVAGYACQVNFSPDGQYVM---- 598
Query: 561 SKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDSQIKFWD 615
S DG+ W+ + RT G Q++ G D IK+WD
Sbjct: 599 SGDGEGKCWFWDWKTCKVYRTLKCHEGVCIGCEWHPLEQSKVATCGWDGMIKYWD 763
>TC205059 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
protein beta subunit-like protein, complete
Length = 1492
Score = 45.4 bits (106), Expect = 1e-04
Identities = 65/273 (23%), Positives = 111/273 (39%), Gaps = 4/273 (1%)
Frame = +2
Query: 350 VTSMDFHPSHQTLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP 409
VT++ + +++ S + I LW L +K K + + L + V+D
Sbjct: 272 VTAIATPIDNSDMIVTASRDKSIILWHL-------TKEDKTYGVPRRRLTGHSHFVQDVV 430
Query: 410 SVSRVTWSLDGSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLC 469
S ++L GS+ G L + A + H V +AF+ N+Q
Sbjct: 431 LSSDGQFALSGSWDGEL---RLWDLAAGTSARRFV------GHTKDVLSVAFSIDNRQ-- 577
Query: 470 VVTCGDDKLIKVWDLTGRRLFNFEGHEAPV--YSICPHHKENIQ-FIFSTAVDGKIKAWL 526
+V+ D+ IK+W+ G + + +A S +Q I S + D +K W
Sbjct: 578 IVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWN 757
Query: 527 YDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFR 586
N R + T+ S DG+ S G KDG ++ W+ +EG KR Y+
Sbjct: 758 LTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGG--KDG--VILLWDLAEG--KRLYSLDA 919
Query: 587 KKSAGVVQFDTTQNRF-LAAGEDSQIKFWDMDN 618
+ F + NR+ L A + IK WD+++
Sbjct: 920 GSIIHALCF--SPNRYWLCAATEQSIKIWDLES 1012
>TC204561 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
protein beta subunit-like protein, complete
Length = 1419
Score = 45.4 bits (106), Expect = 1e-04
Identities = 65/273 (23%), Positives = 111/273 (39%), Gaps = 4/273 (1%)
Frame = +1
Query: 350 VTSMDFHPSHQTLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP 409
VT++ + +++ S + I LW L +K K + + L + V+D
Sbjct: 196 VTAIATPIDNSDMIVTASRDKSIILWHL-------TKEDKTYGVPRRRLTGHSHFVQDVV 354
Query: 410 SVSRVTWSLDGSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLC 469
S ++L GS+ G L + A + H V +AF+ N+Q
Sbjct: 355 LSSDGQFALSGSWDGEL---RLWDLAAGTSARRFV------GHTKDVLSVAFSIDNRQ-- 501
Query: 470 VVTCGDDKLIKVWDLTGRRLFNFEGHEAPV--YSICPHHKENIQ-FIFSTAVDGKIKAWL 526
+V+ D+ IK+W+ G + + +A S +Q I S + D +K W
Sbjct: 502 IVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWN 681
Query: 527 YDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFR 586
N R + T+ S DG+ S G KDG ++ W+ +EG KR Y+
Sbjct: 682 LTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGG--KDG--VILLWDLAEG--KRLYSLDA 843
Query: 587 KKSAGVVQFDTTQNRF-LAAGEDSQIKFWDMDN 618
+ F + NR+ L A + IK WD+++
Sbjct: 844 GSIIHALCF--SPNRYWLCAATEQSIKIWDLES 936
Score = 37.0 bits (84), Expect = 0.049
Identities = 35/131 (26%), Positives = 62/131 (46%), Gaps = 19/131 (14%)
Frame = +1
Query: 446 RVEIDAHIGGVNDLAFAHPNKQLCVVTCGDDKLIKVWDLT-GRRLFNFEGHEAPVYSICP 504
R + H G VN +A + P+ LC + G D +I +WDL G+RL++ + ++++C
Sbjct: 700 RNTLAGHNGYVNTVAVS-PDGSLCA-SGGKDGVILLWDLAEGKRLYSLDAGSI-IHALCF 870
Query: 505 HHKENIQFIFSTAVDGKIKAW----------LYDNMGSRVDYDAPGH--------WCTTM 546
++ A + IK W L ++ + D + G +CT++
Sbjct: 871 SPN---RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSGGGNANKKKVIYCTSL 1041
Query: 547 LYSADGTRLFS 557
+SADG+ LFS
Sbjct: 1042NWSADGSTLFS 1074
>TC229098 similar to PIR|T46032|T46032 WD-40 repeat regulatory protein tup1
homolog - Arabidopsis thaliana {Arabidopsis thaliana;} ,
partial (59%)
Length = 580
Score = 45.1 bits (105), Expect = 2e-04
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 7/172 (4%)
Frame = +3
Query: 454 GGVNDLAFAHPNKQLCVVTCGD-DKLIKVWDL-TGRRLFNFEGHEAPVYSICPHHKENIQ 511
G N + + N Q ++ G D+ ++VWD+ +G+ L H PV ++ +
Sbjct: 48 GHTNYVFCVNFNPQSNIIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAV--DFNRDGS 221
Query: 512 FIFSTAVDGKIKAWLYDN---MGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGDSFL 568
I S++ DG + W M + +D D P + + + + GT D+ L
Sbjct: 222 LIVSSSYDGLCRIWDASTGHCMKTLIDDDNPP---VSFVKFSPNAKFILVGTL---DNTL 383
Query: 569 VEWNESEGAIKRTYNG-FRKKSAGVVQFDTTQNRFLAAG-EDSQIKFWDMDN 618
WN S G +TY G K F TT +++ G E++ I WD+ +
Sbjct: 384 RLWNYSTGKFLKTYTGHVNSKYCISSTFSTTNGKYIVGGSEENYIYLWDLQS 539
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.333 0.143 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,174,073
Number of Sequences: 63676
Number of extensions: 881621
Number of successful extensions: 7235
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 6981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7193
length of query: 1115
length of database: 12,639,632
effective HSP length: 107
effective length of query: 1008
effective length of database: 5,826,300
effective search space: 5872910400
effective search space used: 5872910400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 64 (29.3 bits)
Medicago: description of AC144513.3