BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144513.18 + phase: 0
(107 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233270 similar to UP|O04018 (O04018) F7G19.1 protein, partial ... 94 1e-20
TC217228 similar to UP|Q8H0P8 (Q8H0P8) RNA-binding protein, part... 66 2e-12
TC207106 UP|Q70MR6 (Q70MR6) Ornithine decarboxylase , complete 37 0.002
TC226776 similar to GB|AAP68287.1|31711862|BT008848 At1g02720 {A... 34 0.012
TC226777 similar to PIR|T01514|T01514 glycosyl transferase homol... 32 0.036
TC205267 similar to GB|AAM10267.1|20147101|AY091668 AT4g38690/F2... 30 0.18
BU761350 similar to GP|9759033|dbj| acyl-peptide hydrolase-like ... 30 0.18
TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxida... 30 0.23
TC203807 similar to UP|Q8L9H4 (Q8L9H4) CONSTANS-like B-box zinc ... 30 0.23
TC225070 similar to UP|Q8L5R5 (Q8L5R5) Tubulin folding cofactor ... 29 0.40
AI966092 similar to GP|16648775|gb| AT3g61870/F21F14_40 {Arabido... 28 0.52
TC217463 similar to PIR|E86378|E86378 protein F21J9.10 [imported... 28 0.68
TC227575 UP|PHYB_SOYBN (P42499) Phytochrome B, complete 28 0.89
TC207032 similar to UP|Q8H0H0 (Q8H0H0) Myb-like protein, partial... 27 1.5
TC207361 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, part... 27 1.5
BE191096 27 2.0
CO980726 27 2.0
TC227977 weakly similar to UP|Q9FGQ2 (Q9FGQ2) MtN3-like protein,... 26 2.6
TC211167 26 2.6
TC232366 similar to UP|Q6UEI5 (Q6UEI5) ZEITLUPE, partial (18%) 26 2.6
>TC233270 similar to UP|O04018 (O04018) F7G19.1 protein, partial (50%)
Length = 601
Score = 93.6 bits (231), Expect = 1e-20
Identities = 53/96 (55%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
Frame = +1
Query: 3 TCFRVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPF---NPNDPFLSKLASVAES 59
T RVP S P + P S T T T+ R L+T +++ +KIP NP DPFLSKLAS+A S
Sbjct: 1 TSLRVPTSTPIT-PQSPTA-TRTKCRNLKTSCSVNAAKIPMPPLNPKDPFLSKLASIAAS 174
Query: 60 SPETLFNPSSSPDNLPFLDIFDSPQLMATPAQVSNS 95
SP+TL N + D P+LDIFDSP+LMATPAQV S
Sbjct: 175SPDTLLNTPKNSDTPPYLDIFDSPKLMATPAQVERS 282
>TC217228 similar to UP|Q8H0P8 (Q8H0P8) RNA-binding protein, partial (36%)
Length = 698
Score = 66.2 bits (160), Expect = 2e-12
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Frame = +1
Query: 6 RVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPF---NPNDPFLSKLASVAESSPE 62
RVP S P + P S T T T+ R L+T +++ +KIP NP DPFLSKLAS+A SSP+
Sbjct: 10 RVPTSTPIT-PQSPTA-TRTKCRNLKTSCSVNAAKIPMPPLNPKDPFLSKLASIAASSPD 183
Query: 63 TLFNPSSSPDNLPFLD 78
TL N + D PFLD
Sbjct: 184TLLNTPKNSDTPPFLD 231
>TC207106 UP|Q70MR6 (Q70MR6) Ornithine decarboxylase , complete
Length = 1551
Score = 36.6 bits (83), Expect = 0.002
Identities = 26/69 (37%), Positives = 39/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 8 PISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNP-NDPFLSKLASVAESSPETLFN 66
P S P S P+S+T+ +P+ +R+LR+ A S P P ++PF + ESS +T N
Sbjct: 247 PRSSP-STPSSATQTSPSSVRSLRSAPA---STAPAKPRSNPFSPSESHPTESSMQTHAN 414
Query: 67 PSSSPDNLP 75
PS + D P
Sbjct: 415 PSHTSDTPP 441
>TC226776 similar to GB|AAP68287.1|31711862|BT008848 At1g02720 {Arabidopsis
thaliana;} , partial (68%)
Length = 1307
Score = 33.9 bits (76), Expect = 0.012
Identities = 24/67 (35%), Positives = 34/67 (49%)
Frame = +2
Query: 8 PISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLFNP 67
P P++ P SST +P+ T T A S P + N P + +S SSP+ NP
Sbjct: 656 PSPPPSATPPSSTSPSPS---TSSTSAAPSPPSTP-SSNTPSARRTSSSTSSSPKPTSNP 823
Query: 68 SSSPDNL 74
SS+P +L
Sbjct: 824 SSNPPSL 844
>TC226777 similar to PIR|T01514|T01514 glycosyl transferase homolog T10M13.14
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(83%)
Length = 1247
Score = 32.3 bits (72), Expect = 0.036
Identities = 23/64 (35%), Positives = 32/64 (49%)
Frame = +1
Query: 8 PISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLFNP 67
P P++ P SST +P+ T T A S P + N P + +S SSP+ NP
Sbjct: 130 PFPPPSATPPSSTWPSPS---TWSTSAAPSPPSTP-SSNTPSARRTSSSTSSSPKPTSNP 297
Query: 68 SSSP 71
SS+P
Sbjct: 298 SSNP 309
>TC205267 similar to GB|AAM10267.1|20147101|AY091668 AT4g38690/F20M13_250
{Arabidopsis thaliana;} , partial (92%)
Length = 1403
Score = 30.0 bits (66), Expect = 0.18
Identities = 24/64 (37%), Positives = 34/64 (52%)
Frame = +1
Query: 12 PTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLFNPSSSP 71
PT++P T T + TLR +A +KS P P P +KLAS++ +P NPS S
Sbjct: 268 PTTVP--KTEKTGCPISTLRN-SASTKSSGPA-PTTPQPTKLASLSSLAPSPSANPSPST 435
Query: 72 DNLP 75
+ P
Sbjct: 436 ASSP 447
>BU761350 similar to GP|9759033|dbj| acyl-peptide hydrolase-like {Arabidopsis
thaliana}, partial (11%)
Length = 445
Score = 30.0 bits (66), Expect = 0.18
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 68 SSSPDNLPFLDIFDSPQLMATPAQVSNSNFSFHF 101
SSSPD+L + F P+L+ P +V N +F
Sbjct: 102 SSSPDSLKYSSYFSKPELIEFPTEVPGQNAYAYF 203
>TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxidase ATP26a
{Arabidopsis thaliana;} , partial (49%)
Length = 731
Score = 29.6 bits (65), Expect = 0.23
Identities = 31/86 (36%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +3
Query: 17 ASSTRFTP-TRLRTLRTVNAIS------KSKIPFNPNDPFLSKLASVAESSPETLFNPSS 69
A TR +P T RTL +A S S+ P P P S +S SSP + PSS
Sbjct: 72 APPTRDSPWTSTRTLVRSSARS*GTPSQASRSPAPPPPPPRSASSSTTASSPTAVTPPSS 251
Query: 70 SPDNLPFLDIFDSPQLMATPAQVSNS 95
SP SP ATP S S
Sbjct: 252 SPPR-------PSPGPSATPTSTSPS 308
>TC203807 similar to UP|Q8L9H4 (Q8L9H4) CONSTANS-like B-box zinc finger
protein-like, partial (49%)
Length = 1780
Score = 29.6 bits (65), Expect = 0.23
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +2
Query: 12 PTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLFNPSSSP 71
P + A+ T PT R + S S IP NP+ S + S P P+SSP
Sbjct: 368 PFASRATPTSTPPTHSRNATSAFPWSPSSIPRNPSSKPPPPPLSGSSSPPTMALPPTSSP 547
Query: 72 DNLP 75
P
Sbjct: 548 PTTP 559
>TC225070 similar to UP|Q8L5R5 (Q8L5R5) Tubulin folding cofactor B, complete
Length = 1118
Score = 28.9 bits (63), Expect = 0.40
Identities = 28/99 (28%), Positives = 43/99 (43%)
Frame = -3
Query: 6 RVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLF 65
R P++MP+ +P S+ +TPT+ S S P N P + S + P TL
Sbjct: 885 RTPLTMPSCLPKGSSYWTPTQ------KPGPSDSARPTNFTTPLFAP-GSTSHLDP-TLI 730
Query: 66 NPSSSPDNLPFLDIFDSPQLMATPAQVSNSNFSFHFLQI 104
+ SP I S + A + NFS +FL++
Sbjct: 729 SAERSP-------IQSSGIFASAVAVFWDVNFSLYFLKV 634
>AI966092 similar to GP|16648775|gb| AT3g61870/F21F14_40 {Arabidopsis
thaliana}, partial (12%)
Length = 380
Score = 28.5 bits (62), Expect = 0.52
Identities = 17/44 (38%), Positives = 20/44 (44%), Gaps = 5/44 (11%)
Frame = +2
Query: 40 KIPFNPNDPFL-----SKLASVAESSPETLFNPSSSPDNLPFLD 78
K+P PN P L SKL + S+P NLPFLD
Sbjct: 71 KLPILPNKPLLPRPSTSKLVPFPSIYSKLNIPKDSNPQNLPFLD 202
>TC217463 similar to PIR|E86378|E86378 protein F21J9.10 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(46%)
Length = 687
Score = 28.1 bits (61), Expect = 0.68
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 45 PNDPFLSKLASVAESSPETLFNPSSSPDNL--PFLDIFDSPQL 85
P+ LSK ++ SSP +F P P L PFL +F+ +L
Sbjct: 253 PHSSSLSKSILISFSSPSIIFLPKLEPSMLE*PFLQMFNFSKL 125
>TC227575 UP|PHYB_SOYBN (P42499) Phytochrome B, complete
Length = 4095
Score = 27.7 bits (60), Expect = 0.89
Identities = 19/58 (32%), Positives = 30/58 (50%)
Frame = +2
Query: 14 SMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLFNPSSSP 71
S P+SS+ +P T +A ++ P + LSK ++ A SSP +PS+SP
Sbjct: 149 STPSSSSPASPGGPSTTPNQSASHRNPSPSSR*RLTLSKSSAAASSSPSAP*SPSTSP 322
>TC207032 similar to UP|Q8H0H0 (Q8H0H0) Myb-like protein, partial (43%)
Length = 1001
Score = 26.9 bits (58), Expect = 1.5
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -3
Query: 23 TPTRLRTLRTV--NAISKSKIPFNPNDPFLSKLASVAESSPETLFNPSSSP 71
+P R ++LR V + S + N + PFLS LAS++ + T +P++ P
Sbjct: 867 SPPRSQSLRLVF*SHSSVPSLTCNSSLPFLSSLASLSRTPR*TFASPAAPP 715
>TC207361 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial (53%)
Length = 1127
Score = 26.9 bits (58), Expect = 1.5
Identities = 20/56 (35%), Positives = 28/56 (49%)
Frame = -1
Query: 43 FNPNDPFLSKLASVAESSPETLFNPSSSPDNLPFLDIFDSPQLMATPAQVSNSNFS 98
F+ N S +S A +SP F+ SSP LPF F SP A + ++S+ S
Sbjct: 845 FSSNTAVSSLDSSSALASPSPFFSLFSSPSPLPF-SFFFSPSSSAFFSSFASSSSS 681
>BE191096
Length = 304
Score = 26.6 bits (57), Expect = 2.0
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 36 ISKSKIPFNPNDPFLSKLASVAESS--PETLFNPSSSPDNLPFLDIFDSPQLMATPAQVS 93
I S IPF+ NDP +S+++S + P PSS PF I S ++ P +
Sbjct: 207 IPYSAIPFSLNDPSVSEISSNPNNM*YPTYKTGPSSGSPERPFA-ILPSYKVEKNPDPAA 31
Query: 94 NSN 96
+ N
Sbjct: 30 DRN 22
>CO980726
Length = 812
Score = 26.6 bits (57), Expect = 2.0
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 12 PTSMPASSTRFTPTRLRTLRTVNAISKS 39
P+S+P SS + P +LRT + + A+SKS
Sbjct: 584 PSSIP*SSFKKLPCKLRTSQAL*ALSKS 501
>TC227977 weakly similar to UP|Q9FGQ2 (Q9FGQ2) MtN3-like protein, partial
(53%)
Length = 1293
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/39 (35%), Positives = 24/39 (60%)
Frame = -2
Query: 3 TCFRVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKI 41
TCF PIS+ T+ A + RF+P L + T ++++ S +
Sbjct: 887 TCFFSPISISTNPVAFAPRFSP--LTAVLTFSSLATSSL 777
>TC211167
Length = 852
Score = 26.2 bits (56), Expect = 2.6
Identities = 23/73 (31%), Positives = 36/73 (48%), Gaps = 4/73 (5%)
Frame = -2
Query: 30 LRTVNAISKSKI----PFNPNDPFLSKLASVAESSPETLFNPSSSPDNLPFLDIFDSPQL 85
LR+ +S SK+ F+P+ S L S ++ SP LF+PS + F
Sbjct: 794 LRSCV*VSASKLFSTSKFSPSKFSPSGLFSPSKFSPPELFSPSCKYSSSKF--------- 642
Query: 86 MATPAQVSNSNFS 98
+P++VS+S FS
Sbjct: 641 --SPSKVSSSKFS 609
>TC232366 similar to UP|Q6UEI5 (Q6UEI5) ZEITLUPE, partial (18%)
Length = 592
Score = 26.2 bits (56), Expect = 2.6
Identities = 19/69 (27%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = +3
Query: 7 VPISMPTSMPASSTRFTPTRLRTLRTVNAISKS---KIPFNPNDPFLSKLASVA-ESSPE 62
+PI T S+ TPT L R+++ SK+ + P + P S L +++ S+P
Sbjct: 213 IPI*AGTKRRKGSSSTTPTTLALSRSLSPSSKTSSKRRPAASSSPTRSILTTLSFTSTPS 392
Query: 63 TLFNPSSSP 71
+ +P+++P
Sbjct: 393 SRLSPATAP 419
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.129 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,789,961
Number of Sequences: 63676
Number of extensions: 62116
Number of successful extensions: 606
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of query: 107
length of database: 12,639,632
effective HSP length: 83
effective length of query: 24
effective length of database: 7,354,524
effective search space: 176508576
effective search space used: 176508576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC144513.18