BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144502.7 - phase: 2
(168 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204526 284 1e-77
TC204528 283 4e-77
TC204527 281 8e-77
TC204529 266 5e-72
TC204530 261 1e-70
TC228842 214 2e-56
CO981695 208 1e-54
TC228841 176 4e-45
TC205612 similar to GB|AAM91395.1|22137100|AY133565 At4g14410/dl... 171 2e-43
BG154399 150 2e-37
BG239333 135 7e-33
BG653966 72 6e-24
BE209851 87 5e-22
TC205613 90 4e-19
TC234011 88 2e-18
TC204533 weakly similar to UP|SFRB_HUMAN (Q05519) Splicing facto... 73 7e-14
TC213824 similar to UP|Q9LT23 (Q9LT23) Emb|CAA18500.1, partial (... 70 4e-13
TC228389 weakly similar to UP|Q7X857 (Q7X857) Amelogenin-like pr... 65 2e-11
AW832516 58 2e-09
TC218914 similar to UP|Q9LT23 (Q9LT23) Emb|CAA18500.1, partial (... 57 4e-09
>TC204526
Length = 807
Score = 284 bits (727), Expect = 1e-77
Identities = 143/167 (85%), Positives = 152/167 (90%)
Frame = +2
Query: 2 RSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGE 61
R +S A+SSKACREKLRRDRLNDKF+ELGSILEPGRP KTDKA+ILIDA RMVTQLR E
Sbjct: 11 RCDSSTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKASILIDAARMVTQLRDE 190
Query: 62 AQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALP 121
A KLKD+N+ LQEKIKELK EKNELRDEKQRLKAEKEKLE Q+KSMNA P+FLP P A+P
Sbjct: 191 ALKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEVQVKSMNAQPAFLPPPPAIP 370
Query: 122 AAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 168
AAFA QGQA GNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 371 AAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 511
>TC204528
Length = 793
Score = 283 bits (723), Expect = 4e-77
Identities = 140/153 (91%), Positives = 146/153 (94%)
Frame = +2
Query: 1 VRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRG 60
VRSESCAA+ SKACREKLRRDRLNDKF+ELG+ILEPGRPAKTDKAAILIDAVRMVTQLRG
Sbjct: 335 VRSESCAASGSKACREKLRRDRLNDKFVELGAILEPGRPAKTDKAAILIDAVRMVTQLRG 514
Query: 61 EAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTAL 120
EAQKLKD N GLQEKIKELK EKNELRDEKQRLKAEKEKLEQQLKS+NA PSF+P P A+
Sbjct: 515 EAQKLKDTNQGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAM 694
Query: 121 PAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPA 153
PAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPA
Sbjct: 695 PAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPA 793
>TC204527
Length = 898
Score = 281 bits (720), Expect = 8e-77
Identities = 142/167 (85%), Positives = 151/167 (90%)
Frame = +2
Query: 2 RSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGE 61
R +S A+SSKACREKLRRDRLNDKF+ELGSILEPGRP KTDKA+ILIDA RMVTQLR E
Sbjct: 398 RCDSSTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKASILIDAARMVTQLRDE 577
Query: 62 AQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALP 121
A KLKD+N+ LQEKIKELK EKNELRDEKQRLKAEKEKLE Q+KSMNA P+FLP P A+P
Sbjct: 578 ALKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEVQVKSMNAQPAFLPPPPAIP 757
Query: 122 AAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 168
AAFA QGQA GNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPP A
Sbjct: 758 AAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPDA 898
>TC204529
Length = 854
Score = 266 bits (679), Expect = 5e-72
Identities = 132/151 (87%), Positives = 138/151 (90%)
Frame = +1
Query: 18 LRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIK 77
L+ +F+ELGSILEPGRPAKTDK AILIDAVRMVTQLRGEAQKLKD N GLQEKIK
Sbjct: 46 LKESGSKKRFVELGSILEPGRPAKTDKTAILIDAVRMVTQLRGEAQKLKDTNQGLQEKIK 225
Query: 78 ELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALPAAFAAQGQAHGNKLVP 137
ELK EKNELRDEKQRLKAEKEKLEQQLKS+NA PSF+P P A+PAAFAAQGQAHGNKLVP
Sbjct: 226 ELKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGNKLVP 405
Query: 138 FISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 168
FISYPGVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 406 FISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 498
>TC204530
Length = 957
Score = 261 bits (666), Expect = 1e-70
Identities = 130/168 (77%), Positives = 144/168 (85%)
Frame = +1
Query: 1 VRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRG 60
VRSESCAA+SSKACREKLRRDRLNDKF+ELGSILEPGRPAKTDKAAILIDA +M Q G
Sbjct: 454 VRSESCAASSSKACREKLRRDRLNDKFVELGSILEPGRPAKTDKAAILIDAGQMGNQFTG 633
Query: 61 EAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTAL 120
+ ++KD N GLQEKIKELK EKNELRDE+ RLKAE EKLEQQL+S+NA PSF+P A+
Sbjct: 634 *SPEVKDTNQGLQEKIKELKAEKNELRDERHRLKAENEKLEQQLRSVNAQPSFMPPAAAM 813
Query: 121 PAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 168
PAA AAQGQAHGNK+VPFIS P AMWQ+MPP DTSQDH+L PPVA
Sbjct: 814 PAACAAQGQAHGNKVVPFISNPRSAMWQYMPPGCRDTSQDHILHPPVA 957
>TC228842
Length = 1023
Score = 214 bits (544), Expect = 2e-56
Identities = 109/160 (68%), Positives = 129/160 (80%)
Frame = +2
Query: 9 TSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDA 68
+ SKACREK+RRDRLND+F+ELGSIL+P +P K DKA IL DAVR+V+QLR EAQKL+++
Sbjct: 314 SDSKACREKMRRDRLNDRFMELGSILDPRKPLKMDKAVILSDAVRVVSQLREEAQKLRES 493
Query: 69 NSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALPAAFAAQG 128
LQEKI LK EKNELRDEKQRLK EKE LEQ++K++++ PSFL AA G
Sbjct: 494 TENLQEKINALKDEKNELRDEKQRLKVEKENLEQKVKALSSQPSFL----------AAAG 643
Query: 129 QAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 168
Q G+KLVPF+ YPGVAMWQF+ PAAVDTSQDHVLRPPVA
Sbjct: 644 QVVGSKLVPFMGYPGVAMWQFLSPAAVDTSQDHVLRPPVA 763
>CO981695
Length = 415
Score = 208 bits (529), Expect = 1e-54
Identities = 107/138 (77%), Positives = 117/138 (84%)
Frame = -1
Query: 25 DKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKN 84
DKF+ELGSI E GR AKTDK+ ILID VRMV+QLRGEAQKLKD N GLQEKI++LK EKN
Sbjct: 415 DKFVELGSI*ERGRHAKTDKSXILIDDVRMVSQLRGEAQKLKDXNQGLQEKIRDLKXEKN 236
Query: 85 ELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGV 144
E+RD+KQR+KAEKEKLEQQLKS+N SF+P A AAFA QGQAHGNKLVPFI GV
Sbjct: 235 EVRDQKQRIKAEKEKLEQQLKSLNGQLSFMPPRDAXXAAFAVQGQAHGNKLVPFIRDTGV 56
Query: 145 AMWQFMPPAAVDTSQDHV 162
AMWQFMP AAVDTSQDHV
Sbjct: 55 AMWQFMPLAAVDTSQDHV 2
>TC228841
Length = 584
Score = 176 bits (447), Expect = 4e-45
Identities = 89/140 (63%), Positives = 112/140 (79%)
Frame = +3
Query: 8 ATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKD 67
++ SKACREK+RRDRLND+F+EL SI+ PG P K DKA IL DAVR+V+QL+ EAQKL++
Sbjct: 186 SSDSKACREKMRRDRLNDRFMELWSIVGPGMPLKMDKAVILSDAVRVVSQLQEEAQKLRE 365
Query: 68 ANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALPAAFAAQ 127
++ LQEKI ELK EKNELRDEKQRLKAEK+ +EQ+L ++++ PSFLP AF +
Sbjct: 366 SSENLQEKINELKAEKNELRDEKQRLKAEKDSIEQKLIALSSQPSFLP-------AFPSA 524
Query: 128 GQAHGNKLVPFISYPGVAMW 147
GQ G+KLVPF+ YPGVAMW
Sbjct: 525 GQVVGSKLVPFMGYPGVAMW 584
>TC205612 similar to GB|AAM91395.1|22137100|AY133565 At4g14410/dl3245w
{Arabidopsis thaliana;} , partial (47%)
Length = 863
Score = 171 bits (432), Expect = 2e-43
Identities = 90/167 (53%), Positives = 120/167 (70%), Gaps = 1/167 (0%)
Frame = +3
Query: 3 SESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEA 62
++S SKACREKLRR+RLN++F +L S+LEPGRP +TDK AIL DA+R+++QL+ EA
Sbjct: 147 TDSSCKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEA 326
Query: 63 QKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMN-APPSFLPTPTALP 121
Q+LK N L E+IK LK EKNELR+EK LKA+KE++E+QLK++ AP F+ P
Sbjct: 327 QELKKTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPVAPAGFMAPPV--- 497
Query: 122 AAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 168
AA AA QA NK+ + +Y + MWQ++P + DTS DH LRPP A
Sbjct: 498 AAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSVRDTSHDHELRPPAA 638
>BG154399
Length = 301
Score = 150 bits (380), Expect = 2e-37
Identities = 74/100 (74%), Positives = 84/100 (84%)
Frame = +2
Query: 69 NSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALPAAFAAQG 128
N+ L+EK+K+LK EKNEL D+KQ LKA K+KLE Q+KSMNA P FLP P+A+PAAFA QG
Sbjct: 2 NTSLKEKMKDLKAEKNELSDQKQMLKA*KDKLEVQVKSMNAKPVFLPPPSAIPAAFAPQG 181
Query: 129 QAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 168
Q+ GNKLVPFISYPGVAMW FMP VDT QDHVLRPPVA
Sbjct: 182 QSDGNKLVPFISYPGVAMWLFMPADVVDT*QDHVLRPPVA 301
>BG239333
Length = 376
Score = 135 bits (341), Expect = 7e-33
Identities = 73/118 (61%), Positives = 85/118 (71%)
Frame = +2
Query: 26 KFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNE 85
+F+EL SILEP R K+DK AIL DA R+V QLR EA++LK+ N LQ K+KELK EKNE
Sbjct: 41 RFLELSSILEPSRQPKSDKVAILSDAARVVIQLRNEAKRLKEMNDELQAKVKELKGEKNE 220
Query: 86 LRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPG 143
LRDEK RLK EKEKLEQQ+K N PSF LP A A+GQ +KL+PFI YPG
Sbjct: 221 LRDEKNRLKEEKEKLEQQVKVANIQPSF------LPQAPDAKGQVGSHKLIPFIGYPG 376
>BG653966
Length = 416
Score = 72.4 bits (176), Expect(2) = 6e-24
Identities = 35/38 (92%), Positives = 37/38 (97%)
Frame = +1
Query: 26 KFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQ 63
+F+ELGSILEPGRPAKTDK AILIDAVRMVTQLRGEAQ
Sbjct: 301 RFVELGSILEPGRPAKTDKTAILIDAVRMVTQLRGEAQ 414
Score = 54.7 bits (130), Expect(2) = 6e-24
Identities = 25/27 (92%), Positives = 27/27 (99%)
Frame = +3
Query: 1 VRSESCAATSSKACREKLRRDRLNDKF 27
VRSESCAA+SSKACREKLRRDRLNDK+
Sbjct: 111 VRSESCAASSSKACREKLRRDRLNDKY 191
>BE209851
Length = 379
Score = 87.4 bits (215), Expect(2) = 5e-22
Identities = 40/42 (95%), Positives = 41/42 (97%)
Frame = +1
Query: 127 QGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 168
+GQA GNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA
Sbjct: 115 KGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 240
Score = 33.1 bits (74), Expect(2) = 5e-22
Identities = 14/22 (63%), Positives = 17/22 (76%)
Frame = +3
Query: 106 SMNAPPSFLPTPTALPAAFAAQ 127
S NA P++LP PTA+PAA A Q
Sbjct: 51 SKNAKPAYLPPPTAIPAALAPQ 116
>TC205613
Length = 918
Score = 90.1 bits (222), Expect = 4e-19
Identities = 41/65 (63%), Positives = 55/65 (84%)
Frame = +3
Query: 2 RSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGE 61
R++SC SKACREKLRR+RLN++F +L S+LEPGRP +TDK AIL DA+R+++QL+ E
Sbjct: 720 RTDSCFKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTE 899
Query: 62 AQKLK 66
AQ+LK
Sbjct: 900 AQELK 914
>TC234011
Length = 473
Score = 87.8 bits (216), Expect = 2e-18
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +2
Query: 1 VRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRG 60
+R+ESCA+ SKACREKLRRD+LN++F+EL SILEPGR KTDK A+L DA R+V QLR
Sbjct: 284 LRTESCAS-GSKACREKLRRDKLNERFLELSSILEPGRQPKTDKVALLSDAARVVIQLRN 460
Query: 61 EAQK 64
EA++
Sbjct: 461 EAER 472
>TC204533 weakly similar to UP|SFRB_HUMAN (Q05519) Splicing factor
arginine/serine-rich 11 (Arginine-rich 54 kDa nuclear
protein) (p54), partial (5%)
Length = 663
Score = 72.8 bits (177), Expect = 7e-14
Identities = 44/88 (50%), Positives = 48/88 (54%), Gaps = 36/88 (40%)
Frame = +1
Query: 2 RSESCAATSSKACREKLRRDRLNDK----------------------------------- 26
+S+S A+SSKACREKLRRDRLNDK
Sbjct: 400 KSDSSTASSSKACREKLRRDRLNDK*TSESSPSSLCS*LLSLWVCVNMFWGHASNMIDLH 579
Query: 27 -FIELGSILEPGRPAKTDKAAILIDAVR 53
F+ELGSILEPGRP KTDKAAILIDA R
Sbjct: 580 RFVELGSILEPGRPPKTDKAAILIDAAR 663
>TC213824 similar to UP|Q9LT23 (Q9LT23) Emb|CAA18500.1, partial (18%)
Length = 544
Score = 70.5 bits (171), Expect = 4e-13
Identities = 36/70 (51%), Positives = 49/70 (69%)
Frame = +3
Query: 5 SCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQK 64
S A + KA REKLRRDRLN++F+ELG+IL+P RP K DKA I+ D ++++ L + K
Sbjct: 336 SAARKTQKADREKLRRDRLNEQFVELGNILDPDRP-KNDKATIIGDTIQLLKDLTSQVSK 512
Query: 65 LKDANSGLQE 74
LKD + L E
Sbjct: 513 LKDEYATLNE 542
>TC228389 weakly similar to UP|Q7X857 (Q7X857) Amelogenin-like protein,
partial (22%)
Length = 919
Score = 65.1 bits (157), Expect = 2e-11
Identities = 38/118 (32%), Positives = 65/118 (54%), Gaps = 8/118 (6%)
Frame = +1
Query: 12 KACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSG 71
KA REK++R+ LN++F++L S L+ KA+IL + R++ L + + LK N
Sbjct: 280 KAEREKMKREHLNERFVDLASALDLNE--NNGKASILCETARLLKDLLSQIESLKKENVT 453
Query: 72 LQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKS--------MNAPPSFLPTPTALP 121
L + + +EKNEL++E L+ + EKL+ ++++ +N PP P T P
Sbjct: 454 LLSESHYMTMEKNELKEENCSLETQIEKLQGEIQARLAQSKPDLNVPPHEPPEQTNFP 627
>AW832516
Length = 304
Score = 57.8 bits (138), Expect = 2e-09
Identities = 33/77 (42%), Positives = 47/77 (60%)
Frame = +2
Query: 13 ACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGL 72
A R+KL RDRLN+ F E+G+ L+P RP K DKA IL + V+M+ + +LK + L
Sbjct: 2 ADRKKLTRDRLNEHFQEMGNALDPDRP-KNDKATILTETVQMLIDCTADVYRLKTEYNSL 178
Query: 73 QEKIKELKVEKNELRDE 89
E+ EL + N+L E
Sbjct: 179AEE*LELVPDTNDLYRE 229
>TC218914 similar to UP|Q9LT23 (Q9LT23) Emb|CAA18500.1, partial (23%)
Length = 1030
Score = 57.0 bits (136), Expect = 4e-09
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 16/97 (16%)
Frame = +2
Query: 41 KTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKL 100
K DKA IL D ++++ L + KLKD + L E+ +EL +EK +LR+EK LK++ + L
Sbjct: 44 KNDKATILCDTIQLLKDLISQVSKLKDEYAMLNEESRELTLEKTDLREEKASLKSDIDNL 223
Query: 101 ----EQQLKS-----------MNAPPSF-LPTPTALP 121
+QQL++ M AP S+ P P A+P
Sbjct: 224 NNQYQQQLRTMFPWTAMEHSVMMAPSSYPYPVPMAVP 334
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.130 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,102,630
Number of Sequences: 63676
Number of extensions: 72708
Number of successful extensions: 482
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of query: 168
length of database: 12,639,632
effective HSP length: 90
effective length of query: 78
effective length of database: 6,908,792
effective search space: 538885776
effective search space used: 538885776
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144502.7