BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144484.10 - phase: 0
(589 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232022 homologue to UP|Q9LU46 (Q9LU46) DEAD-box protein abstra... 463 e-130
BI320659 similar to GP|8843865|dbj DEAD-box protein abstrakt {Ar... 266 2e-71
TC206536 similar to UP|Q9FZ92 (Q9FZ92) F3H9.16 protein, partial ... 215 5e-56
TC228534 similar to UP|Q6S4Y1 (Q6S4Y1) DEAD box RNA helicase, pa... 147 1e-52
TC206333 homologue to UP|IF4V_TOBAC (Q40465) Eukaryotic initiati... 192 3e-49
TC224718 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, ... 191 8e-49
TC224636 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, ... 187 1e-47
TC227551 homologue to UP|O65879 (O65879) Translation initiation ... 186 2e-47
TC224595 homologue to UP|IF4U_TOBAC (P41382) Eukaryotic initiati... 186 3e-47
TC220021 similar to UP|Q8LPE9 (Q8LPE9) At5g26743, partial (41%) 177 2e-44
TC226496 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90 (AT5... 176 2e-44
TC226130 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (... 175 4e-44
TC205570 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90 (AT5... 175 6e-44
TC216873 similar to UP|Q9SCQ0 (Q9SCQ0) RNA helicase-like protein... 146 2e-35
TC229568 similar to UP|Q9FFQ1 (Q9FFQ1) RNA helicase, partial (91%) 135 3e-35
TC217408 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (62%) 144 8e-35
BE660362 similar to GP|8489871|gb| DEAD box protein P68 {Pisum s... 108 3e-33
TC216872 similar to UP|Q9SCQ0 (Q9SCQ0) RNA helicase-like protein... 103 4e-31
TC210089 similar to UP|DBP1_YEAST (P24784) Probable ATP-dependen... 132 6e-31
BM085824 125 7e-29
>TC232022 homologue to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt, partial
(39%)
Length = 829
Score = 463 bits (1191), Expect = e-130
Identities = 228/233 (97%), Positives = 231/233 (98%)
Frame = +2
Query: 357 IIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLL 416
IIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLL
Sbjct: 2 IIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLL 181
Query: 417 LKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEI 476
LKGVEAVAIHGGKDQEEREYAI++FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEI
Sbjct: 182 LKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEI 361
Query: 477 ENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDN 536
ENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL DPMEDN
Sbjct: 362 ENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDN 541
Query: 537 EEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI 589
EEIT ISGVKGCAYCGGLGHRIRDCPKLEHQKS+AIANNRKDYFGSGGYRGEI
Sbjct: 542 EEITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI 700
>BI320659 similar to GP|8843865|dbj DEAD-box protein abstrakt {Arabidopsis
thaliana}, partial (23%)
Length = 421
Score = 266 bits (679), Expect = 2e-71
Identities = 130/140 (92%), Positives = 138/140 (97%)
Frame = +1
Query: 152 PDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEI 211
P+P+LK LK KGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM+AMQEEI
Sbjct: 1 PEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEI 180
Query: 212 MMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLE 271
MMPIVPGEGPFGLIICPSRELARQT+EVIE+FL+PLKEAGYPELRPLLCIGG+DMRSQL+
Sbjct: 181 MMPIVPGEGPFGLIICPSRELARQTFEVIEQFLIPLKEAGYPELRPLLCIGGVDMRSQLD 360
Query: 272 IVKKGVHIVVATPGRLKDML 291
IVKKGVHIVVATPGRLKDML
Sbjct: 361 IVKKGVHIVVATPGRLKDML 420
>TC206536 similar to UP|Q9FZ92 (Q9FZ92) F3H9.16 protein, partial (45%)
Length = 1221
Score = 215 bits (547), Expect = 5e-56
Identities = 116/294 (39%), Positives = 166/294 (56%), Gaps = 18/294 (6%)
Frame = +1
Query: 252 YPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR 311
Y ++ + +GG + Q +++G IV+ATPGRL D L ++ L+ C Y+ LDEADR
Sbjct: 4 YLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 183
Query: 312 LVDLGFEDDIREVFDHF-----------------KAQRQTLLFSATMPTKIQNFARSALV 354
++D+GFE + V D K R T +FSATMP ++ AR L
Sbjct: 184 MIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLR 363
Query: 355 KPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHE 413
P++V +G AG A + Q V +K+ K L L + ++F K + D + +
Sbjct: 364 NPVVVTIGTAGKATDLISQHVIMMKEAEKFSKLHRLLDELNDKTAIVFVNTKKNADHVAK 543
Query: 414 YLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 473
L G +HGGK QE+RE ++ F+ + +VLVATDVA +G+D PD+ HVINYDMP
Sbjct: 544 NLDKDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP 723
Query: 474 AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 527
IE Y HRIGRTGR GKTG+ATTF+ + S+ DLK +L ++ +PP LA
Sbjct: 724 GNIEMYTHRIGRTGRAGKTGVATTFLTLHDSD-VFYDLKQMLIQSNSPVPPELA 882
>TC228534 similar to UP|Q6S4Y1 (Q6S4Y1) DEAD box RNA helicase, partial (53%)
Length = 939
Score = 147 bits (371), Expect(2) = 1e-52
Identities = 80/210 (38%), Positives = 124/210 (58%), Gaps = 3/210 (1%)
Frame = +1
Query: 316 GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGA-ANLDVIQE 374
GF+ +R++ + RQTL +SAT P +++ AR L P V +G + AN + Q
Sbjct: 310 GFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSSDLKANHAIRQY 489
Query: 375 VEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQE 432
V+ V ++ K L++ L+ +LIF + K D I L + G A++IHG K Q
Sbjct: 490 VDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQA 669
Query: 433 EREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT 492
ER++ +S FK+GK ++ ATDVA++GLD D+++V+NYD P +E+YVHRIGRTGR G
Sbjct: 670 ERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVVNYDFPGSLEDYVHRIGRTGRAGAK 849
Query: 493 GIATTFINKNQSETTLLDLKHLLQEAKQRI 522
G A T+ + +L +L+EA Q++
Sbjct: 850 GTAYTYFTAANARFA-KELIAILEEAGQKV 936
Score = 78.2 bits (191), Expect(2) = 1e-52
Identities = 41/100 (41%), Positives = 57/100 (57%)
Frame = +3
Query: 217 PGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKG 276
PG+GP L++ P+RELA Q + +F ++ GG+ Q+ ++KG
Sbjct: 30 PGDGPIVLVLAPTRELAVQIQQEATKF------GASSRIKSTCIYGGVPKGPQVRDLQKG 191
Query: 277 VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLG 316
V IV+ATPGRL DML NL YL LDEADR++D+G
Sbjct: 192 VEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMG 311
>TC206333 homologue to UP|IF4V_TOBAC (Q40465) Eukaryotic initiation factor
4A-11 (eIF4A-11) (eIF-4A-11), partial (92%)
Length = 1625
Score = 192 bits (489), Expect = 3e-49
Identities = 120/395 (30%), Positives = 205/395 (51%), Gaps = 3/395 (0%)
Frame = +1
Query: 139 IPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVF 198
+ P F M + +L+ + G +P+ IQ +G+ G D+I A +G+GKT F
Sbjct: 157 LAPEGSQFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 336
Query: 199 VLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPL 258
++ +++ +V + L++ P+RELA+Q +V+ Y ++
Sbjct: 337 CSGVL-----QQLDYSLVECQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVH 474
Query: 259 LCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFE 318
+C+GG +R I+ GVH+VV TPGR+ DML ++ + DN R LDEAD ++ GF+
Sbjct: 475 VCVGGTIVREDQRILSSGVHVVVGTPGRVFDMLCRQSLRPDNIRMFVLDEADEMLSRGFK 654
Query: 319 DDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VE 376
D I ++F + Q +FSATMP + R + KP+ + V R L+ I++ V
Sbjct: 655 DQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQFFVN 831
Query: 377 YVKQEAKIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEERE 435
K++ K+ L + + +IF + VD + + + + A HG DQ R+
Sbjct: 832 VDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD 1011
Query: 436 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA 495
+ F++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A
Sbjct: 1012IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA 1191
Query: 496 TTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELV 530
F+ E L D++ + +P +A+L+
Sbjct: 1192INFVT-GDDERMLFDIQKFYNVQIEELPANVADLI 1293
>TC224718 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, complete
Length = 1624
Score = 191 bits (485), Expect = 8e-49
Identities = 121/389 (31%), Positives = 207/389 (53%), Gaps = 3/389 (0%)
Frame = +3
Query: 145 NFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM 204
+F M + +L+ + G +P+ IQ +G+ G D+I A +G+GKT F ++
Sbjct: 267 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL- 443
Query: 205 MAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGI 264
+++ + + L++ P+RELA+Q IE+ + L E Y ++ C+GG
Sbjct: 444 ----QQLDYSVTECQA---LVLAPTRELAQQ----IEKVMRALGE--YLGVKVHACVGGT 584
Query: 265 DMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 324
+R I+ GVH+VV TPGR+ DML ++ + D + LDEAD ++ GF+D I ++
Sbjct: 585 SVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 764
Query: 325 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VEYVKQEA 382
F ++ Q +FSATMP + R + KP+ + V R L+ I++ V K+E
Sbjct: 765 FQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQFHVNVEKEEW 941
Query: 383 KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 441
K+ L + + +IF + VD + + + + A HG DQ R+ + F
Sbjct: 942 KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 1121
Query: 442 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 501
++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+ +
Sbjct: 1122RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 1301
Query: 502 NQSETTLLDLKHLLQEAKQRIPPVLAELV 530
+ E L D++ + +P +AEL+
Sbjct: 1302D-DEKMLFDIQKFYNVIIEELPSNVAELL 1385
>TC224636 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, complete
Length = 1556
Score = 187 bits (475), Expect = 1e-47
Identities = 120/392 (30%), Positives = 205/392 (51%), Gaps = 6/392 (1%)
Frame = +2
Query: 145 NFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM 204
+F M + +L+ + G +P+ IQ +G+ G D+I A +G+GKT F ++
Sbjct: 215 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL- 391
Query: 205 MAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGI 264
+++ + + L++ P+RELA+Q +V+ Y ++ C+GG
Sbjct: 392 ----QQLDYSLTQCQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGT 532
Query: 265 DMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 324
+R I+ GVH+VV TPGR+ DML ++ + D+ + LDEAD ++ GF+D I ++
Sbjct: 533 SVREDQRILSSGVHVVVGTPGRVFDMLRRQSLLPDHIKMFVLDEADEMLSRGFKDQIYDI 712
Query: 325 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAK- 383
F ++ Q +FSATMP + R + KP+ + V R L+ I++ YV E +
Sbjct: 713 FQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQF-YVNVERED 886
Query: 384 -----IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAI 438
+ L E L T +IF + VD + + + + A HG DQ R+ +
Sbjct: 887 WKLDTLCDLYETLAITQS--VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIM 1060
Query: 439 SSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 498
F++G VL+ TD+ ++G+D + VIN+D+P + ENY+HRIGR+GR G+ G+A F
Sbjct: 1061REFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINF 1240
Query: 499 INKNQSETTLLDLKHLLQEAKQRIPPVLAELV 530
+ K+ E L D++ + +P +AEL+
Sbjct: 1241VTKD-DEKMLFDIQKFYNVQVEELPSNVAELL 1333
>TC227551 homologue to UP|O65879 (O65879) Translation initiation factor,
complete
Length = 1632
Score = 186 bits (473), Expect = 2e-47
Identities = 121/393 (30%), Positives = 202/393 (50%), Gaps = 5/393 (1%)
Frame = +2
Query: 143 IKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPM 202
I +F++M D +L+ + G +P+ IQ + + I+ GRD+I A +G+GKT + L +
Sbjct: 197 IASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTV 376
Query: 203 --IMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLC 260
++ E+ LI+ P+RELA QT +VI L + ++ C
Sbjct: 377 CQVVDTSVREVQ----------ALILSPTRELASQTEKVI------LAIGDFINIQAHAC 508
Query: 261 IGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 320
+GG + + ++ GVH+V TPGR+ DM+ ++ + + L LDE+D ++ GF+D
Sbjct: 509 VGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQ 688
Query: 321 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VEYV 378
I +V+ + Q L SAT+P +I + P+ + V R L+ I++ V
Sbjct: 689 IYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKR-DELTLEGIKQFFVAVE 865
Query: 379 KQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYA 437
++E K L + T +IFC K VD + E + ++HG Q+ER+
Sbjct: 866 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAI 1045
Query: 438 ISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATT 497
+ F+AG VL+ TDV ++GLD + VINYD+P E Y+HRIGR+GR G+ G+A
Sbjct: 1046MGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 1225
Query: 498 FINKNQSETTLLDLKHLLQEAKQRIPPVLAELV 530
F+ K+ L D++ +P +A+L+
Sbjct: 1226FV-KSDDIKILRDIEQYYSTQIDEMPMNVADLI 1321
>TC224595 homologue to UP|IF4U_TOBAC (P41382) Eukaryotic initiation factor
4A-10 (eIF4A-10) (eIF-4A-10), complete
Length = 1515
Score = 186 bits (471), Expect = 3e-47
Identities = 118/389 (30%), Positives = 203/389 (51%), Gaps = 3/389 (0%)
Frame = +1
Query: 145 NFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM 204
+F M + +L+ + G +P+ IQ +G+ G D+I A +G+GKT F ++
Sbjct: 196 SFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL- 372
Query: 205 MAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGI 264
+++ +V + L++ P+RELA+Q +V+ Y ++ C+GG
Sbjct: 373 ----QQLDYGLVQCQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGT 513
Query: 265 DMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 324
+R I++ GVH VV TPGR+ DML ++ + D + LDEAD ++ GF+D I ++
Sbjct: 514 SVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDI 693
Query: 325 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VEYVKQEA 382
F ++ Q +FSATMP + R + KP+ + V R L+ I++ V K+E
Sbjct: 694 FQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQFYVNVDKEEW 870
Query: 383 KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 441
K+ L + + +IF + VD + + + A HG DQ R+ + F
Sbjct: 871 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREF 1050
Query: 442 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 501
++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+
Sbjct: 1051RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTT 1230
Query: 502 NQSETTLLDLKHLLQEAKQRIPPVLAELV 530
+ S L D++ + +P +A+L+
Sbjct: 1231DDSR-MLSDIQKFYNVTVEELPSNVADLL 1314
>TC220021 similar to UP|Q8LPE9 (Q8LPE9) At5g26743, partial (41%)
Length = 935
Score = 177 bits (448), Expect = 2e-44
Identities = 98/293 (33%), Positives = 162/293 (54%), Gaps = 4/293 (1%)
Frame = +1
Query: 218 GEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGV 277
G P L++ P+RELA+Q + I+E P L + GG+ +Q + +GV
Sbjct: 31 GRLPRFLVLAPTRELAKQVEKEIKE--------SAPYLSTVCVYGGVSYVTQQSALSRGV 186
Query: 278 HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLF 337
+VV TPGR+ D++ + L +YL LDEAD+++ +GFE+D+ + ++ +QRQ++LF
Sbjct: 187 DVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEMILENLPSQRQSMLF 366
Query: 338 SATMPTKIQNFARSALVKPIIVNV----GRAGAANLDVIQEVEYVKQEAKIVYLLECLQK 393
SATMP+ ++ AR L P+ +++ A + + + I+ L +
Sbjct: 367 SATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYA 546
Query: 394 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATD 453
++F + K D D++ L + + A+HG Q +RE ++ F+ GK VLVATD
Sbjct: 547 KGGKTIVFTQTKRDADEV-SLSLTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATD 723
Query: 454 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSET 506
VA++GLD P++ +I+Y++P + E +VHR GRTGR GK G A +Q T
Sbjct: 724 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRT 882
>TC226496 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90
(AT5g11170/F2I11_60), partial (98%)
Length = 1674
Score = 176 bits (447), Expect = 2e-44
Identities = 114/385 (29%), Positives = 196/385 (50%), Gaps = 7/385 (1%)
Frame = +1
Query: 146 FKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMM 205
F+D +L+ + G P+ +Q + +P + G D+I A +G GKT VFVL +
Sbjct: 190 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 369
Query: 206 AMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGID 265
+ VPG+ L++C +RELA Q E F L P+++ + GG++
Sbjct: 370 -------VDPVPGQVA-ALVLCHTRELAYQICHEFERFSTYL-----PDIKAAVFYGGVN 510
Query: 266 MRSQLEIVKKGV-HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIRE 323
++ E++K HIVV TPGR+ + K + L N R+ LDE D++++ L D++E
Sbjct: 511 IKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQE 690
Query: 324 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVK---- 379
+F +Q ++FSAT+ +I+ + + P+ + V L + + Y+K
Sbjct: 691 IFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ-HYIKLQET 867
Query: 380 -QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAI 438
+ K+ LL+ L V+IF ++ + ++++ L+ ++ IH QEER
Sbjct: 868 EKNRKLNDLLDALDFNQ--VVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRY 1041
Query: 439 SSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 498
FK GK+ +LVATD+ +G+D + VINYDMP + Y+HR+GR GR G G+A TF
Sbjct: 1042KGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 1221
Query: 499 INKNQSETTLLDLKHLLQEAKQRIP 523
++ L ++ + + +P
Sbjct: 1222VSSTADSEVLNQVQSRFEVDIKELP 1296
>TC226130 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (88%)
Length = 2120
Score = 175 bits (444), Expect = 4e-44
Identities = 112/386 (29%), Positives = 192/386 (49%), Gaps = 1/386 (0%)
Frame = +2
Query: 146 FKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMM 205
F+D +L + KG +P+PIQ + +P+ L+G D++ A G+GKT F +P +
Sbjct: 695 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 874
Query: 206 AMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGID 265
Q+ ++ +V I+ P+RELA QT +V +E LK ++ ++ GG
Sbjct: 875 IDQDNNVIQVV--------ILVPTRELALQTSQVCKELAKHLK------IQVMVTTGGTS 1012
Query: 266 MRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 325
++ + + + VH++V TPGR+ D+ K L +C L +DEAD+L+ F+ I ++
Sbjct: 1013 LKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLI 1192
Query: 326 DHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIV 385
RQ L+FSAT P +++F L KP ++N+ + Q +V++ K+
Sbjct: 1193 HCLPTTRQILMFSATFPVTVKDFKDRYLRKPYVINL-MDELTLKGITQFYAFVEERQKVH 1369
Query: 386 YLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAG 444
L K +IFC + V+ + + + G IH Q+ R F+ G
Sbjct: 1370 CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 1549
Query: 445 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 504
LV TD+ ++G+D + VIN+D P E Y+HR+GR+GR G G+A I +
Sbjct: 1550 ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLIT-YED 1726
Query: 505 ETTLLDLKHLLQEAKQRIPPVLAELV 530
L ++ L ++IPP + + +
Sbjct: 1727 RFNLYRIEQELGTEIKQIPPQIDQAI 1804
>TC205570 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90
(AT5g11170/F2I11_60), partial (98%)
Length = 1745
Score = 175 bits (443), Expect = 6e-44
Identities = 113/382 (29%), Positives = 197/382 (50%), Gaps = 4/382 (1%)
Frame = +1
Query: 146 FKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMM 205
F+D +L+ + G P+ +Q + +P + G D+I A +G GKT VFVL +
Sbjct: 262 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 441
Query: 206 AMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGID 265
+ VPG+ L++C +RELA Q E F L P+L+ + GG++
Sbjct: 442 -------IDPVPGQVS-ALVLCHTRELAYQICHEFERFSTYL-----PDLKVAVFYGGVN 582
Query: 266 MRSQLEIVKKGV-HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIRE 323
++ +++K HIVV TPGR+ + K ++L N R+ LDE D++++ L D+++
Sbjct: 583 IKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQD 762
Query: 324 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLD-VIQEVEYVKQEA 382
+F +Q ++FSAT+ +I+ + + P+ + V L ++Q +K+E
Sbjct: 763 IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEE 942
Query: 383 KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 441
K L + L V+IF ++ + ++ + L+ ++ IH G QEER F
Sbjct: 943 KNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGF 1122
Query: 442 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 501
K G +LVATD+ +G+D + VINYDMP + Y+HR+GR GR G G+A TF++
Sbjct: 1123KEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSC 1302
Query: 502 NQSETTLLDLKHLLQEAKQRIP 523
+ L +++ + +++P
Sbjct: 1303STDVDVLNNVQSRFEVDIKQLP 1368
>TC216873 similar to UP|Q9SCQ0 (Q9SCQ0) RNA helicase-like protein
(At3g53110), partial (67%)
Length = 1840
Score = 146 bits (369), Expect = 2e-35
Identities = 127/440 (28%), Positives = 193/440 (43%), Gaps = 24/440 (5%)
Frame = +2
Query: 84 SDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSKKDCDLIQKQWHIIVNGEEIPPPI 143
+D++T S E E L K + + D IQ + +G+
Sbjct: 161 ADEETNASTAEAETSSVNLEALTIDDKEKNSSKLLDDPDDSNIQA----VTSGDTPYTSA 328
Query: 144 KNFKDMRFPDPILKMLKTK-GIVQPTPIQVQGLPVILS--GRDMIGIAFTGSGKTLVFVL 200
F+D+ +LK L + +P+ IQ LP+ILS RD+I A GSGKT FVL
Sbjct: 329 ARFEDLSLSPELLKGLYVEMKFEKPSKIQAISLPMILSPPNRDLIAQAHNGSGKTTCFVL 508
Query: 201 PMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLC 260
M+ + + P L ICP+RELA Q EV L+ G C
Sbjct: 509 GMLSRVDPKV--------QAPQALCICPTRELAIQNIEV-------LRRMGKYTGIASEC 643
Query: 261 IGGIDMRSQLEIVKKG---VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR-LVDLG 316
+ +D R + + K+ +V+ TPG +K ++ KK+ R L DEAD+ L + G
Sbjct: 644 LVPLD-RDAVHVSKRAPIMAQVVIGTPGTVKKFISFKKLGTTRLRILVFDEADQMLAEDG 820
Query: 317 FEDDIREVFDHFKAQR---QTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQ 373
F DD + + + Q LLFSAT ++NF + + +LD ++
Sbjct: 821 FRDDSLRIMKDIEKENSKCQVLLFSATFNDTVKNFVSRTVRMDHNKLFVKKEELSLDAVK 1000
Query: 374 EV------EYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHG 427
+ E K + Y+ E + + +IF +K HE L+ G E +I G
Sbjct: 1001QYKVYCPDELAKIDVVKDYIFE-IGENVGQTIIFVRSKITARLTHEALVKLGYEVTSIQG 1177
Query: 428 GKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP--------AEIENY 479
EER+ + FK G VL++TD+ ++G D + VINYD+P + E Y
Sbjct: 1178SLSNEERDKVVKEFKDGLTQVLISTDILARGFDQQQVNLVINYDLPKKYGVRDEPDYEVY 1357
Query: 480 VHRIGRTGRCGKTGIATTFI 499
+HR+GR GR G+ G I
Sbjct: 1358LHRVGRAGRFGRKGAVFNLI 1417
>TC229568 similar to UP|Q9FFQ1 (Q9FFQ1) RNA helicase, partial (91%)
Length = 1635
Score = 135 bits (339), Expect(2) = 3e-35
Identities = 104/319 (32%), Positives = 151/319 (46%), Gaps = 18/319 (5%)
Frame = +3
Query: 193 GKTLVFVLPMIMMAMQEEIMMPIVPGEGPFG------LIICPSRELARQTYEVIEEFLLP 246
GKT+ F+LP I E++ P + L+ICP+RELA Q + L
Sbjct: 234 GKTVAFLLPSI------EVVAKSPPSDRDHRRPPISVLVICPTRELASQAAAEATKLL-- 389
Query: 247 LKEAGYPELRPLLCIGGIDMR-SQLEIVKKGVHIVVATPGRLKDML---AKKKMNLDNCR 302
+P + + IGG + Q + I+VATPGRL+D A L +
Sbjct: 390 ---KYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVK 560
Query: 303 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPI-IVNV 361
L LDEAD L+D+GF DI ++ QRQTL+FSAT+P +++ AL + +N
Sbjct: 561 VLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINT 740
Query: 362 GRAGAANL-DVIQEVEYVKQEAKIVYLLECLQK------TPPPVLIFCENKADVDDIHEY 414
+ G +++ V K LL L K VL+FC + E
Sbjct: 741 VQEGTEETHSQVRQTHLVAPLDKHFSLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAEL 920
Query: 415 LLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPA 474
L + IH K Q R F+ K +LV +DV+++G+D+PD+ VI +PA
Sbjct: 921 LGELNLNVREIHSRKPQSYRTRVSEEFRRSKGLILVTSDVSARGVDYPDVTLVIQVGLPA 1100
Query: 475 EIENYVHRIGRTGRCGKTG 493
+ E Y+HR+GRTGR GK G
Sbjct: 1101DREQYIHRLGRTGRRGKEG 1157
Score = 32.3 bits (72), Expect(2) = 3e-35
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = +2
Query: 156 LKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGK 194
LK +K G + T +Q LPVIL G+D++ A TG+ K
Sbjct: 122 LKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTXK 238
>TC217408 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (62%)
Length = 1368
Score = 144 bits (364), Expect = 8e-35
Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 7/313 (2%)
Frame = +1
Query: 224 LIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVAT 283
+I+C +REL+ QTY + K A + R L ++ + K ++++T
Sbjct: 55 VILCHTRELSVQTYRECK------KLAKRKKFRIKLMTK--NLLRNADFSKFPCDVLIST 210
Query: 284 PGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDH-FKAQRQTL----LFS 338
P RL+ + +KK++L YL LDE+D+L FE ++ + D KA LFS
Sbjct: 211 PLRLRLAIKRKKIDLSRVEYLVLDESDKL----FEPELFKQIDSVIKACSNPSIIRSLFS 378
Query: 339 ATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYV-KQEAKIVYLLECLQKT-PP 396
AT+P +++ AR + + V VGR A+ + Q++ + +E K++ + + ++ P
Sbjct: 379 ATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNP 558
Query: 397 PVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVAS 456
PVL+F ++K ++ L + IH Q ERE A+ +F+AGK VL+ATDV +
Sbjct: 559 PVLVFLQSKERAKELCSELAFDSIRVDVIHSDLSQAERENAVDNFRAGKTWVLIATDVVA 738
Query: 457 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 516
+G+DF + VINYD P YVHRIGR+GR G+TG A TF ++ L ++ +L+
Sbjct: 739 RGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRTGEAITFYTEDDI-PFLRNVANLMA 915
Query: 517 EAKQRIPPVLAEL 529
+ +P L +L
Sbjct: 916 ASGCEVPSYLMKL 954
>BE660362 similar to GP|8489871|gb| DEAD box protein P68 {Pisum sativum},
partial (36%)
Length = 726
Score = 108 bits (270), Expect(2) = 3e-33
Identities = 60/159 (37%), Positives = 90/159 (55%)
Frame = +2
Query: 140 PPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFV 199
P PI++F DM I+K + +PT IQ Q +P+ LSGRD++G A TGSGKT F
Sbjct: 41 PAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFT 220
Query: 200 LPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLL 259
+PMI + + PI +GP L++ P+RELA+Q + ++ F L+ L+ +
Sbjct: 221 IPMIQHCLAQH---PIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLE-----SLKTAI 376
Query: 260 CIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNL 298
+GG ++ Q ++ GV I VATPGR D L + +L
Sbjct: 377 VVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSL 493
Score = 52.0 bits (123), Expect(2) = 3e-33
Identities = 25/57 (43%), Positives = 36/57 (62%)
Frame = +1
Query: 306 LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVG 362
LDEADR++D+GFE IR V + + QTLL +ATMP + + ++ L P+ V G
Sbjct: 514 LDEADRMLDMGFEPQIRXVMRNLXEKHQTLLVNATMPVENEELSKEXLAYPMQVKGG 684
>TC216872 similar to UP|Q9SCQ0 (Q9SCQ0) RNA helicase-like protein
(At3g53110), partial (64%)
Length = 1702
Score = 103 bits (257), Expect(2) = 4e-31
Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 20/274 (7%)
Frame = +1
Query: 260 CIGGIDMRSQLEIVKKG---VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR-LVDL 315
C+ +D R + + K+ +V+ TPG +K ++ KK+ + L DEAD+ L
Sbjct: 640 CLVRLD-RDAVHVSKRAPIMAQVVIGTPGTIKKFISFKKLGTSRLKILVFDEADQMLAQE 816
Query: 316 GFEDDIREVFDHFKAQR---QTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVI 372
GF DD ++ + Q LLFSAT ++NF + + +LD +
Sbjct: 817 GFRDDSLKIMKDIEKDNKKCQVLLFSATFNDTVKNFISRTVKMDHNKLFVKKEELSLDAV 996
Query: 373 QEVE-YVKQE-AKIVYLLECLQKTPPPV---LIFCENKADVDDIHEYLLLKGVEAVAIHG 427
++ + Y E AKI + + + + V +IF + +H+ L+ G E +I G
Sbjct: 997 KQYKVYCPDELAKIDVIKDYIFEIGENVGQTIIFMATRDSARLLHQALVNLGYEVTSIQG 1176
Query: 428 GKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP--------AEIENY 479
EER+ + FK G VL++TD+ ++G D + VINY++P + E Y
Sbjct: 1177SLSNEERDKVVKEFKDGLTQVLISTDILARGFDQQQVNLVINYNLPNKHSLRDEPDYEVY 1356
Query: 480 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 513
+HR+GR GR G+ G I E + +++
Sbjct: 1357LHRVGRAGRFGRKGAVFNLICDENDERLMSKIEN 1458
Score = 50.1 bits (118), Expect(2) = 4e-31
Identities = 37/113 (32%), Positives = 55/113 (47%), Gaps = 3/113 (2%)
Frame = +3
Query: 133 IVNGEEIPPPIKNFKDMRFPDPILKMLKTK-GIVQPTPIQVQGLPVILSG--RDMIGIAF 189
+ +G+ F+D+ +LK L + +P+ IQ LP+ILS RD+I A
Sbjct: 291 VTSGDTPYTSAARFEDLSLSPELLKGLYVEMKFEKPSKIQAISLPMILSPPHRDLIAQAH 470
Query: 190 TGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEE 242
GSGKT FVL M+ + + P L +CP+RELA Q E + +
Sbjct: 471 NGSGKTTCFVLGMLSRVDPKV--------QAPQALCVCPTRELAIQNVEELPQ 605
>TC210089 similar to UP|DBP1_YEAST (P24784) Probable ATP-dependent RNA
helicase DBP1 (Helicase CA1), partial (19%)
Length = 731
Score = 132 bits (331), Expect = 6e-31
Identities = 75/189 (39%), Positives = 99/189 (51%)
Frame = +1
Query: 399 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 458
L+F E K D + +L A IHG + Q+ERE A+ SFK+G +LVATDVA++G
Sbjct: 40 LVFVETKKGADALEHWLCRNNFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARG 219
Query: 459 LDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA 518
LD P + HV+N+D+P +I++YVHRIGRTGR GK G+AT F N N + L L+QEA
Sbjct: 220 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARA-LADLMQEA 396
Query: 519 KQRIPPVLAELVDPMEDNEEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKD 578
Q +P L+ G + G GG R + NN
Sbjct: 397 NQEVPDWLSRFAARSSFG---GGRNRRSGGGRFGGRDFRREGSFSRGGSDYYSAGNNSSG 567
Query: 579 YFGSGGYRG 587
Y SGGY G
Sbjct: 568 YGTSGGYGG 594
>BM085824
Length = 357
Score = 125 bits (313), Expect = 7e-29
Identities = 60/100 (60%), Positives = 74/100 (74%)
Frame = +2
Query: 399 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKG 458
L+F E K D + +LL G AVAIHG K Q ERE A+ SFK+G +LVATDVAS+G
Sbjct: 56 LVFVETKRGADVLEGWLLRSGFSAVAIHGDKVQMERERALRSFKSGLTPILVATDVASRG 235
Query: 459 LDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 498
LD P + HVIN+D+P +I+NYVHRIGRTGR GK+G+AT F
Sbjct: 236 LDIPHVAHVINFDLPRDIDNYVHRIGRTGRAGKSGLATAF 355
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,257,479
Number of Sequences: 63676
Number of extensions: 300281
Number of successful extensions: 1582
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of query: 589
length of database: 12,639,632
effective HSP length: 103
effective length of query: 486
effective length of database: 6,081,004
effective search space: 2955367944
effective search space used: 2955367944
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC144484.10