BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144481.8 + phase: 0 /pseudo
(119 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM085313 similar to GP|10177621|db phytoene dehydrogenase-like {... 33 0.019
TC216347 homologue to UP|O81413 (O81413) Ferric leghemoglobin re... 33 0.025
TC209558 UP|Q41219 (Q41219) Ferric leghemoglobin reductase , com... 33 0.025
TC215133 homologue to UP|O65744 (O65744) GDP dissociation inhibi... 30 0.16
TC215130 homologue to UP|O65744 (O65744) GDP dissociation inhibi... 30 0.16
CA783187 similar to GP|15982755|gb| AT3g56060/F18O21_20 {Arabido... 29 0.27
BU761145 28 0.47
TC217762 similar to UP|SOX_ARATH (Q9SJA7) Potential sarcosine ox... 28 0.61
BG154274 similar to PIR|T01782|T017 GDP dissociation inhibitor -... 28 0.79
BI943541 homologue to GP|7159284|gb|A lipoamide dehydrogenase {A... 28 0.79
TC213186 similar to UP|Q70G58 (Q70G58) NADPH thioredoxin reducta... 27 1.4
TC211659 similar to UP|Q8K0R3 (Q8K0R3) Ski protein (Fragment), p... 26 2.3
AI736821 weakly similar to GP|11036868|gb| PxORF73 peptide {Plut... 26 2.3
TC226131 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (86%) 26 2.3
TC218620 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferas... 26 2.3
AW099913 26 2.3
BE806132 similar to PIR|D86350|D863 F8K7.13 protein - Arabidopsi... 26 3.0
BI785940 26 3.0
TC218368 similar to UP|GPDA_CUPLA (P52425) Glycerol-3-phosphate ... 26 3.0
TC204857 similar to GB|BAA03542.1|303902|SPICYSSY cysteine synth... 26 3.0
>BM085313 similar to GP|10177621|db phytoene dehydrogenase-like {Arabidopsis
thaliana}, partial (19%)
Length = 426
Score = 33.1 bits (74), Expect = 0.019
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 72 KCDVVIVGSGCGGGVAAAVLASSGLKVLVLEK 103
K D +I+G G G AAA LA GL V VLE+
Sbjct: 58 KWDALIIGGGHNGLTAAAYLARGGLSVAVLER 153
>TC216347 homologue to UP|O81413 (O81413) Ferric leghemoglobin reductase-2
precursor , complete
Length = 1897
Score = 32.7 bits (73), Expect = 0.025
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLEK 103
DVV++G G GG VAA A GLK +EK
Sbjct: 195 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 284
>TC209558 UP|Q41219 (Q41219) Ferric leghemoglobin reductase , complete
Length = 1745
Score = 32.7 bits (73), Expect = 0.025
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLEK 103
DVV++G G GG VAA A GLK +EK
Sbjct: 138 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 227
>TC215133 homologue to UP|O65744 (O65744) GDP dissociation inhibitor, partial
(14%)
Length = 418
Score = 30.0 bits (66), Expect = 0.16
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLEKGNYF 107
DV+++G+G + + +L+ GLKVL +++ +Y+
Sbjct: 137 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 238
>TC215130 homologue to UP|O65744 (O65744) GDP dissociation inhibitor,
complete
Length = 1747
Score = 30.0 bits (66), Expect = 0.16
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +3
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLEKGNYF 107
DV+++G+G + + +L+ GLKVL +++ +Y+
Sbjct: 138 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 239
>CA783187 similar to GP|15982755|gb| AT3g56060/F18O21_20 {Arabidopsis
thaliana}, partial (8%)
Length = 452
Score = 29.3 bits (64), Expect = 0.27
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Frame = +2
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLEKGN--YFTPRDFSSRRFL 118
D +++G G G AA L S G VLVLE+G Y P + F+
Sbjct: 311 DYIVIGGGTCGCPLAATL-SQGATVLVLERGGSPYTNPEQININNFV 448
>BU761145
Length = 450
Score = 28.5 bits (62), Expect = 0.47
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +2
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLEK 103
DV++VG+G G A LA G V V+E+
Sbjct: 122 DVIVVGAGVAGSALAYTLAKDGRCVHVIER 211
>TC217762 similar to UP|SOX_ARATH (Q9SJA7) Potential sarcosine oxidase ,
partial (58%)
Length = 1312
Score = 28.1 bits (61), Expect = 0.61
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLEKGNY 106
DV+I+G+G G A GLK L+LE+ ++
Sbjct: 34 DVIIIGAGVMGSSTAYHATKRGLKTLLLEQFDF 132
>BG154274 similar to PIR|T01782|T017 GDP dissociation inhibitor - common
tobacco, partial (10%)
Length = 142
Score = 27.7 bits (60), Expect = 0.79
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLEKGNYF 107
DV+++G+G + + +L+S GLKVL ++ +++
Sbjct: 14 DVIVLGTGLNECMLSGLLSSDGLKVLHMD*TDFY 115
>BI943541 homologue to GP|7159284|gb|A lipoamide dehydrogenase {Arabidopsis
thaliana}, partial (12%)
Length = 377
Score = 27.7 bits (60), Expect = 0.79
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +1
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLE 102
D++I+G+G GG AA GLK ++E
Sbjct: 235 DLLIIGAGVGGHGAALHAVEKGLKTAIVE 321
>TC213186 similar to UP|Q70G58 (Q70G58) NADPH thioredoxin reductase, partial
(36%)
Length = 745
Score = 26.9 bits (58), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +1
Query: 74 DVVIVGSGCGGGVAAAVLASSGLKVLVLE 102
+VVI+GSG G AA A + LK +V E
Sbjct: 241 NVVIIGSGPAGYTAAIYAARANLKPVVFE 327
>TC211659 similar to UP|Q8K0R3 (Q8K0R3) Ski protein (Fragment), partial (5%)
Length = 715
Score = 26.2 bits (56), Expect = 2.3
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 75 VVIVGSGCGGGVAA 88
+V+V SGCGGG+AA
Sbjct: 478 LVVVPSGCGGGLAA 437
>AI736821 weakly similar to GP|11036868|gb| PxORF73 peptide {Plutella
xylostella granulovirus}, partial (29%)
Length = 430
Score = 26.2 bits (56), Expect = 2.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 75 VVIVGSGCGGGVAAAVLASSG 95
VV+VG G GGG AVL+ +G
Sbjct: 369 VVLVGGGGGGGGGGAVLSLAG 307
>TC226131 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (86%)
Length = 2250
Score = 26.2 bits (56), Expect = 2.3
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = +2
Query: 75 VVIVGSGCGGGVAAAVLASSGLKVLVLE 102
V+++G+G G AA L + KV VLE
Sbjct: 170 VIVIGAGISGLAAARSLYDASFKVTVLE 253
>TC218620 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferase , partial
(49%)
Length = 960
Score = 26.2 bits (56), Expect = 2.3
Identities = 15/39 (38%), Positives = 25/39 (63%), Gaps = 2/39 (5%)
Frame = +3
Query: 70 KVKCDVVIVGSGCGGGV--AAAVLASSGLKVLVLEKGNY 106
+V+ D+VI+G GGGV +AVLA + +L ++ G +
Sbjct: 126 EVRPDIVILGKALGGGVIPVSAVLADKDV-MLCIQPGQH 239
>AW099913
Length = 454
Score = 26.2 bits (56), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 69 LKVKCDVVIVGSGCGGGVAAAVLASSGLKVLVL 101
L K DV++VG G G AA A G + L+L
Sbjct: 243 LDEKYDVIVVGGGHAGCEAALASARLGARTLLL 341
>BE806132 similar to PIR|D86350|D863 F8K7.13 protein - Arabidopsis thaliana,
partial (11%)
Length = 406
Score = 25.8 bits (55), Expect = 3.0
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 9 NQAWEAIGYHVDNDESTSNIQK--ERPLEKGIVEAMNEDDLSLAQSLSNK 56
N+ W I HV I P+E G +E +N LSL ++ N+
Sbjct: 69 NENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSLSLLSNVKNQ 218
>BI785940
Length = 421
Score = 25.8 bits (55), Expect = 3.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 72 KCDVVIVGSGCGGGVAAAVLASSGLKVLVL 101
K DV++VG G G AA A G + L+L
Sbjct: 309 KYDVIVVGGGHAGCEAALASARLGARTLLL 398
>TC218368 similar to UP|GPDA_CUPLA (P52425) Glycerol-3-phosphate
dehydrogenase [NAD+] , partial (92%)
Length = 1633
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = +3
Query: 75 VVIVGSGCGGGVAAAVLASSGLKV 98
V ++GSG G VAA ++AS+ L++
Sbjct: 63 VTVIGSGNWGSVAAKLIASNTLRL 134
>TC204857 similar to GB|BAA03542.1|303902|SPICYSSY cysteine synthase
{Spinacia oleracea;} , partial (19%)
Length = 604
Score = 25.8 bits (55), Expect = 3.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 12 WEAIGYHVDNDESTSNIQKERPLEKGIVEAMNED 45
W + + ++STS ++K++PLE+G E N+D
Sbjct: 286 WNSAEWEHAKNKSTS*LRKQKPLEEG-WEMQNDD 188
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,490,478
Number of Sequences: 63676
Number of extensions: 57010
Number of successful extensions: 209
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of query: 119
length of database: 12,639,632
effective HSP length: 95
effective length of query: 24
effective length of database: 6,590,412
effective search space: 158169888
effective search space used: 158169888
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC144481.8