BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144481.12 - phase: 0 /pseudo
(72 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231848 weakly similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein A... 83 3e-17
TC210559 similar to UP|Q84MI1 (Q84MI1) MADS-box protein (Fragmen... 62 6e-11
TC234766 homologue to UP|Q7Y137 (Q7Y137) MADS-box protein PTM5, ... 62 6e-11
TC220575 similar to UP|Q8LLR1 (Q8LLR1) MADS-box protein 3, parti... 60 2e-10
TC206232 homologue to UP|Q8H6F8 (Q8H6F8) MADS box protein GHMADS... 59 5e-10
BU761215 homologue to PIR|T08039|T08 MADS-box protein - cucumber... 58 1e-09
AW706936 57 1e-09
TC207360 similar to UP|Q8VWZ3 (Q8VWZ3) C-type MADS box protein, ... 57 2e-09
TC228632 similar to UP|Q9ZTQ9 (Q9ZTQ9) MADS box protein 26, part... 56 4e-09
BG789532 similar to GP|13384052|gb| MADS-box transcription facto... 55 7e-09
TC228368 similar to UP|O49173 (O49173) MADS-box protein NMH 7, p... 55 9e-09
AI959798 similar to GP|22091481|emb MADS box transcription facto... 54 1e-08
BM732175 similar to GP|15022157|gb MADS box protein-like protein... 53 3e-08
TC229190 similar to UP|Q9SEG4 (Q9SEG4) CAGL2, partial (86%) 52 6e-08
CD412950 weakly similar to SP|Q9S7Q7|FLC_A FLOWERING LOCUS C pro... 52 7e-08
TC208789 similar to UP|Q9SBQ1 (Q9SBQ1) MADS box transcription fa... 52 7e-08
TC222155 weakly similar to UP|O81662 (O81662) Transcription acti... 52 7e-08
TC222058 homologue to UP|AGL9_PETHY (Q03489) Agamous-like MADS b... 51 1e-07
TC229191 homologue to UP|Q84U54 (Q84U54) MADS-RIN-like protein, ... 51 1e-07
AI900863 similar to GP|20219018|gb| MADS-box transcription facto... 51 1e-07
>TC231848 weakly similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein AGL62,
partial (25%)
Length = 621
Score = 82.8 bits (203), Expect = 3e-17
Identities = 38/59 (64%), Positives = 49/59 (82%)
Frame = -3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
++N+ +LQVTFSKH G+FKKASEL TLCG +A+I+FSP+ V+SFG PNVD+VI RY
Sbjct: 295 IANKCSLQVTFSKHRTGVFKKASELATLCGVDLAVIMFSPNNHVYSFGSPNVDSVIQRY 119
>TC210559 similar to UP|Q84MI1 (Q84MI1) MADS-box protein (Fragment), partial
(64%)
Length = 710
Score = 62.0 bits (149), Expect = 6e-11
Identities = 31/67 (46%), Positives = 41/67 (60%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N ++ QVTFSK NGL KKA EL LC A +ALI+FSP K++ F ++ I+RY
Sbjct: 370 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERYR 549
Query: 61 SSTTSKQ 67
S Q
Sbjct: 550 RHNRSAQ 570
>TC234766 homologue to UP|Q7Y137 (Q7Y137) MADS-box protein PTM5, partial
(33%)
Length = 490
Score = 62.0 bits (149), Expect = 6e-11
Identities = 31/67 (46%), Positives = 41/67 (60%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N ++ QVTFSK NGL KKA EL LC A +ALI+FSP K++ F ++ I+RY
Sbjct: 269 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERYR 448
Query: 61 SSTTSKQ 67
S Q
Sbjct: 449 RHNRSAQ 469
>TC220575 similar to UP|Q8LLR1 (Q8LLR1) MADS-box protein 3, partial (44%)
Length = 851
Score = 60.5 bits (145), Expect = 2e-10
Identities = 28/59 (47%), Positives = 40/59 (67%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N+ N QVTFSK NGL KKA EL LC A IAL++FS K+F + +++ +I++Y
Sbjct: 188 IQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSSTDINRIIEKY 364
>TC206232 homologue to UP|Q8H6F8 (Q8H6F8) MADS box protein GHMADS-2, partial
(95%)
Length = 960
Score = 58.9 bits (141), Expect = 5e-10
Identities = 28/59 (47%), Positives = 39/59 (65%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + N+ + I+RY
Sbjct: 105 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERY 281
>BU761215 homologue to PIR|T08039|T08 MADS-box protein - cucumber, partial
(42%)
Length = 450
Score = 57.8 bits (138), Expect = 1e-09
Identities = 28/64 (43%), Positives = 41/64 (63%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + +V I+RY
Sbjct: 172 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYK 351
Query: 61 SSTT 64
+++
Sbjct: 352 KASS 363
>AW706936
Length = 422
Score = 57.4 bits (137), Expect = 1e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N ++ QVTFSK NGL KKA EL LC A + L+VFS + K++ + ++ +VI+RY
Sbjct: 161 IDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVIERY 337
>TC207360 similar to UP|Q8VWZ3 (Q8VWZ3) C-type MADS box protein, partial
(88%)
Length = 1075
Score = 56.6 bits (135), Expect = 2e-09
Identities = 27/59 (45%), Positives = 38/59 (63%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +AL+VFS +++ + + +V I+RY
Sbjct: 125 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERY 301
>TC228632 similar to UP|Q9ZTQ9 (Q9ZTQ9) MADS box protein 26, partial (82%)
Length = 880
Score = 55.8 bits (133), Expect = 4e-09
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVD--TVIDR 58
+ N SN QVT+SK NG+ KKA E+ LC A ++LI+F+ S K+ + P+ +++R
Sbjct: 85 IENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILER 264
Query: 59 YLSSTTSKQW 68
Y ++ + W
Sbjct: 265 YHKTSGKRLW 294
>BG789532 similar to GP|13384052|gb| MADS-box transcription factor FBP13
{Petunia x hybrida}, partial (37%)
Length = 414
Score = 55.1 bits (131), Expect = 7e-09
Identities = 26/59 (44%), Positives = 38/59 (64%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N + QVTFSK GLFKKA EL LC A + LIVFS + K+F + +++ ++ +Y
Sbjct: 186 IDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSSMNDIVTKY 362
>TC228368 similar to UP|O49173 (O49173) MADS-box protein NMH 7, partial (97%)
Length = 1042
Score = 54.7 bits (130), Expect = 9e-09
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDT--VIDR 58
+ N +N QVT+SK NGLFKKA+EL LC A +++I+FS + K+ + P+ T D+
Sbjct: 111 IENNTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHQYISPSTSTKQFFDQ 290
Query: 59 YLSSTTSKQW 68
Y + W
Sbjct: 291 YQMTLGVDLW 320
>AI959798 similar to GP|22091481|emb MADS box transcription factor {Daucus
carota subsp. sativus}, partial (39%)
Length = 409
Score = 54.3 bits (129), Expect = 1e-08
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF--GHPNVDTVIDR 58
+ N+ N QVTF+K NGL KKA EL LC A +ALI+FS K++ F GH T ++R
Sbjct: 120 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGHSTAKT-LER 296
Query: 59 Y 59
Y
Sbjct: 297 Y 299
>BM732175 similar to GP|15022157|gb MADS box protein-like protein NGL9
{Medicago sativa}, partial (60%)
Length = 421
Score = 52.8 bits (125), Expect = 3e-08
Identities = 24/54 (44%), Positives = 35/54 (64%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDT 54
+ N SN QVT+SK NG+ KKA E+ LC A ++LI+F+ S K+ + P+ T
Sbjct: 69 IENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTT 230
>TC229190 similar to UP|Q9SEG4 (Q9SEG4) CAGL2, partial (86%)
Length = 1062
Score = 52.0 bits (123), Expect = 6e-08
Identities = 26/51 (50%), Positives = 33/51 (63%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPN 51
+ N+ N QVTF+K NGL KKA EL LC A +ALI+FS K++ F N
Sbjct: 343 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTN 495
>CD412950 weakly similar to SP|Q9S7Q7|FLC_A FLOWERING LOCUS C protein (MADS
box protein FLOWERING LOCUS F). [Mouse-ear cress],
partial (41%)
Length = 674
Score = 51.6 bits (122), Expect = 7e-08
Identities = 25/61 (40%), Positives = 39/61 (62%)
Frame = -3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N+SN Q+TFSK GL KKA EL LC A +AL++FS + K++ + + D+ + +
Sbjct: 645 IENKSNRQITFSKRRKGLMKKARELSILCDAKLALLIFSSTGKLYELCNGDRDSALKLQI 466
Query: 61 S 61
S
Sbjct: 465 S 463
>TC208789 similar to UP|Q9SBQ1 (Q9SBQ1) MADS box transcription factor,
partial (72%)
Length = 995
Score = 51.6 bits (122), Expect = 7e-08
Identities = 26/60 (43%), Positives = 39/60 (64%), Gaps = 1/60 (1%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGH-PNVDTVIDRY 59
+ N+ +QVTFSK +GL KKA E+ LC A +ALIVFS K+ + + P + +++RY
Sbjct: 249 IENKIFMQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLLDYSNQPCTERILERY 428
>TC222155 weakly similar to UP|O81662 (O81662) Transcription activator,
partial (65%)
Length = 915
Score = 51.6 bits (122), Expect = 7e-08
Identities = 24/63 (38%), Positives = 40/63 (63%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ + ++ QV FSK +GL KKA EL LC A +A+IVFS + +++ F ++ +++RY
Sbjct: 182 IEDTTSRQVAFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSSSDMTKILERYR 361
Query: 61 SST 63
T
Sbjct: 362 EHT 370
>TC222058 homologue to UP|AGL9_PETHY (Q03489) Agamous-like MADS box protein
AGL9 homolog (Floral homeotic protein FBP2) (Floral
binding protein 2), partial (60%)
Length = 495
Score = 51.2 bits (121), Expect = 1e-07
Identities = 25/47 (53%), Positives = 32/47 (67%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF 47
+ N+ N QVTF+K NGL KKA EL LC A +ALI+FS K++ F
Sbjct: 90 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 230
>TC229191 homologue to UP|Q84U54 (Q84U54) MADS-RIN-like protein, partial
(32%)
Length = 558
Score = 51.2 bits (121), Expect = 1e-07
Identities = 25/47 (53%), Positives = 32/47 (67%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF 47
+ N+ N QVTF+K NGL KKA EL LC A +ALI+FS K++ F
Sbjct: 350 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 490
>AI900863 similar to GP|20219018|gb| MADS-box transcription factor MADS-rin
{Lycopersicon esculentum}, partial (15%)
Length = 362
Score = 50.8 bits (120), Expect = 1e-07
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF-GHPNVDTVIDRY 59
+ N+SN Q+TFSK GL KKA EL LC A +AL++FS + K++ ++ V+ RY
Sbjct: 23 IENKSNRQITFSKRRKGLMKKARELSILCDAKLALLIFSSTGKLYELCNGDSLAEVVQRY 202
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,672,138
Number of Sequences: 63676
Number of extensions: 41892
Number of successful extensions: 262
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of query: 72
length of database: 12,639,632
effective HSP length: 48
effective length of query: 24
effective length of database: 9,583,184
effective search space: 229996416
effective search space used: 229996416
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC144481.12