BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144478.5 + phase: 0
(898 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226470 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, ... 553 e-158
TC226473 weakly similar to UP|Q6L8U0 (Q6L8U0) Auxin response fac... 533 e-151
TC226471 similar to UP|Q6L8U0 (Q6L8U0) Auxin response factor 4, ... 320 2e-87
TC226469 similar to UP|Q6L8U0 (Q6L8U0) Auxin response factor 4, ... 278 1e-74
TC207359 similar to GB|BAB08972.1|9758525|AB024026 auxin respons... 276 2e-74
TC217321 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, ... 265 5e-71
AI443940 homologue to GP|19352043|db auxin response factor 6b {O... 263 3e-70
TC234419 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, ... 257 1e-68
TC212372 similar to GB|AAN46837.1|24111405|BT001072 At5g62000/mt... 221 1e-57
TC209860 similar to GB|AAB62404.1|2245390|ATU89296 auxin respons... 219 3e-57
TC226472 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, ... 160 3e-55
TC227705 similar to GB|AAM91657.1|22136676|AY133723 auxin respon... 204 1e-52
TC224267 similar to UP|Q6L8U3 (Q6L8U3) Auxin response factor 1, ... 169 3e-49
BG507596 homologue to GP|9757747|dbj auxin response factor 4 {Ar... 190 2e-48
TC207358 similar to UP|ARFH_ARATH (Q9FGV1) Auxin response factor... 190 2e-48
BU082018 weakly similar to GP|23093517|gb CG32133-PA {Drosophila... 173 3e-43
BI469301 homologue to GP|19352043|db auxin response factor 6b {O... 161 1e-39
BG790017 similar to PIR|T08917|T08 auxin response factor 9 - Ara... 157 2e-38
TC204478 similar to UP|ARFB_ARATH (Q94JM3) Auxin response factor... 143 3e-34
TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 ... 135 8e-32
>TC226470 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, partial
(30%)
Length = 1359
Score = 553 bits (1426), Expect = e-158
Identities = 292/391 (74%), Positives = 335/391 (84%), Gaps = 2/391 (0%)
Frame = +1
Query: 510 QHQHSFNNQLHHHSQQQQQTQQQVVDNNQQISGSVSTMSQFVSATQPQSPPPMQALSSLC 569
Q+QH+ Q QQQ Q QQQ V ++QQIS +VSTMSQFVSA Q QSPP MQA+SSL
Sbjct: 1 QNQHNLLQQ-----QQQSQLQQQQVVDHQQISSAVSTMSQFVSAPQSQSPP-MQAISSLG 162
Query: 570 HQQSFSDSNVNSSTT-IVSPLHSIMGSSFPHDESSLLMSLPRTSSWVPVQNSTGWPS-KR 627
HQQSFSDSN N TT +VSPLHSI+GS FP D++S L++LPR++SWVPVQ+ST WPS KR
Sbjct: 163 HQQSFSDSNGNPVTTAVVSPLHSILGS-FPQDDTSHLLNLPRSTSWVPVQHSTAWPSSKR 339
Query: 628 IAVDPLLSSGASQCILPQVEQLGQARNSMSQNAITLPPFPGRECSIDQEGSNDPQSNLLF 687
+AVDPL SSGASQC+LPQVEQLGQ +++M+QN I LPPFPGREC+I EGSNDPQ++LLF
Sbjct: 340 VAVDPLFSSGASQCVLPQVEQLGQPQSTMAQNGIALPPFPGRECTI--EGSNDPQNHLLF 513
Query: 688 GVNIDPSSLLLHNGMSNFKGISGNNNDSSTMSYHQSSSYMNTAGADSSLNHGVTPSIGES 747
GVNI+PSSLL+HNGMS+ KG+S +N+DS T+ + QSS+Y+NT DSSLN G+T +IGES
Sbjct: 514 GVNIEPSSLLMHNGMSSLKGVS-SNSDSPTIPF-QSSNYLNTTVPDSSLNPGMTHNIGES 687
Query: 748 GFLHTQENGEQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGELED 807
GFL T ENG QGN P NKTFVKVYKSGSFGRSLDITKF+SY ELRSELARMFGLEGELED
Sbjct: 688 GFLQTPENGGQGN-PTNKTFVKVYKSGSFGRSLDITKFTSYPELRSELARMFGLEGELED 864
Query: 808 PVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQ 867
PVRSGWQLVFVD+ENDVLLLGDGPWPEFVNSV CIKILSP+EVQQMGN GL LLNSVPIQ
Sbjct: 865 PVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQ 1044
Query: 868 RLSNSICDDYVSRQDSRNLSSGITTVGSLDY 898
RLSN +CDDY R+D RNLS+GIT VGSL+Y
Sbjct: 1045RLSNGVCDDYAGREDPRNLSTGITIVGSLNY 1137
>TC226473 weakly similar to UP|Q6L8U0 (Q6L8U0) Auxin response factor 4,
partial (25%)
Length = 1168
Score = 533 bits (1373), Expect = e-151
Identities = 286/403 (70%), Positives = 329/403 (80%), Gaps = 1/403 (0%)
Frame = +2
Query: 396 RGLQSLNYQGIGVNPWMQPRFDPAMLNMQTDMYQAVAAAALQDMRTVVDPSKQLPGSLLQ 455
RGL SLN+Q IG+NPWMQPRFDP MLNMQTDMYQA AA+QDMR++ DPSKQ SLL
Sbjct: 2 RGLPSLNFQVIGINPWMQPRFDPTMLNMQTDMYQA---AAVQDMRSL-DPSKQHSASLLP 169
Query: 456 FQQPPNFPNRTAALMQAQMLQQSQPQQAFQNNNQENQNLSQSQPQAQTNPQQHPQHQHSF 515
FQQP NFPNRTAALMQAQMLQQSQPQQ F N QENQ+ PQ+Q + QQH QHQHSF
Sbjct: 170 FQQPQNFPNRTAALMQAQMLQQSQPQQIF-GNTQENQH----SPQSQAHLQQHLQHQHSF 334
Query: 516 NNQLHHHSQQQQQTQQQVVDNNQQISGSVSTMSQFVSATQPQSPPPMQALSSLCHQQSFS 575
N+Q HHH QQQQQ QQ V +NQQIS +VSTMSQFVSA QPQSPP MQ +SS+C QQ+FS
Sbjct: 335 NSQHHHHHQQQQQRQQHQVVDNQQISSAVSTMSQFVSAPQPQSPP-MQVISSMCQQQNFS 511
Query: 576 DSNVNSSTTIVSPLHSIMGSSFPHDESSLLMSLPRTSSWVPVQNSTGWPSKRIAVDPLLS 635
DSN N+ TTIVSPLHSI+GS FP DE+S L++LPRTSSW+PVQNS+GWPSKR+AVDPLLS
Sbjct: 512 DSNGNTVTTIVSPLHSILGS-FPQDETSHLLNLPRTSSWIPVQNSSGWPSKRVAVDPLLS 688
Query: 636 SGASQCILPQVEQLGQARNSMSQNAITLPPFPGRECSIDQEGSNDPQSNLLFGVNIDPSS 695
GASQC+LPQVEQLGQ +++MSQNAI+LPPFPGRECSIDQEGSNDPQ++LLFGVNI+PSS
Sbjct: 689 YGASQCVLPQVEQLGQPQSTMSQNAISLPPFPGRECSIDQEGSNDPQNHLLFGVNIEPSS 868
Query: 696 LLLHNGMSNFKGISGNNNDSSTMSYHQSSSYMNTAG-ADSSLNHGVTPSIGESGFLHTQE 754
LL+ NGMS+ KG+ GNN SST+ Y QSS+Y+NT DSSLNHG+T +I +SGFL E
Sbjct: 869 LLMPNGMSSLKGVCGNNG-SSTLPY-QSSNYLNTTTLTDSSLNHGMTLNICDSGFLPCLE 1042
Query: 755 NGEQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELAR 797
+PLN TFVKVYKS SLDIT+ SY+EL +LAR
Sbjct: 1043EARL-RSPLNTTFVKVYKSWFCRTSLDITRSISYHELAGDLAR 1168
>TC226471 similar to UP|Q6L8U0 (Q6L8U0) Auxin response factor 4, partial
(19%)
Length = 987
Score = 320 bits (820), Expect = 2e-87
Identities = 164/199 (82%), Positives = 175/199 (87%), Gaps = 1/199 (0%)
Frame = +2
Query: 701 GMSNFKGISGNNNDSSTMSYHQSSSYMNTAG-ADSSLNHGVTPSIGESGFLHTQENGEQG 759
GMS+ KG+ GNN SST+ Y QSS+Y+NT DSSLNHG+TP+IG+SGFL E QG
Sbjct: 2 GMSSLKGVCGNNG-SSTLPY-QSSNYLNTTTRTDSSLNHGMTPNIGDSGFLQCLEEAGQG 175
Query: 760 NNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGELEDPVRSGWQLVFVD 819
N PLNKTFVKVYKSGSFGRSLDITKFSSY+ELR ELARMFGLEGELEDPVRSGWQLVFVD
Sbjct: 176 N-PLNKTFVKVYKSGSFGRSLDITKFSSYHELRGELARMFGLEGELEDPVRSGWQLVFVD 352
Query: 820 RENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVS 879
RENDVLLLGDGPWPEFVNSVWCIKILSP+EVQQMGN GL LLNS PIQRLSN ICDDYVS
Sbjct: 353 RENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSFPIQRLSNGICDDYVS 532
Query: 880 RQDSRNLSSGITTVGSLDY 898
RQD RNL +GITTVGSLDY
Sbjct: 533 RQDPRNLGTGITTVGSLDY 589
>TC226469 similar to UP|Q6L8U0 (Q6L8U0) Auxin response factor 4, partial
(17%)
Length = 748
Score = 278 bits (710), Expect = 1e-74
Identities = 138/164 (84%), Positives = 145/164 (88%)
Frame = +1
Query: 735 SLNHGVTPSIGESGFLHTQENGEQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSE 794
SLNHG+TP+IG+ H E+ QGN PL VKVYKSGSFGRSLDITKFSSY+ELR E
Sbjct: 1 SLNHGMTPNIGDXXXXHCPEDAGQGN-PLXXXXVKVYKSGSFGRSLDITKFSSYHELRGE 177
Query: 795 LARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMG 854
LARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSP+EVQQMG
Sbjct: 178 LARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMG 357
Query: 855 NTGLGLLNSVPIQRLSNSICDDYVSRQDSRNLSSGITTVGSLDY 898
N GL LLNSVP QRLSN ICDDYVSRQD RNLS+GITTVGSLDY
Sbjct: 358 NNGLELLNSVPNQRLSNGICDDYVSRQDPRNLSTGITTVGSLDY 489
>TC207359 similar to GB|BAB08972.1|9758525|AB024026 auxin responsive
transcription factor {Arabidopsis thaliana;} , partial
(25%)
Length = 1263
Score = 276 bits (707), Expect = 2e-74
Identities = 192/453 (42%), Positives = 243/453 (53%), Gaps = 9/453 (1%)
Frame = +2
Query: 280 TRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGWDESTAGERQP 339
TRVSVGMRFRMLFETEESSVRRYMGTITGI DLD VRWPNSHWRSVKVGWDESTAGERQP
Sbjct: 2 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQP 181
Query: 340 RVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGMSSPLMWLR--DTDRG 397
RVSLWEIEPLTTFPMYPS FPLRLKRPW PG SFH +D+ ++ LMWLR D+
Sbjct: 182 RVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDE---ATNGLMWLRGGPGDQA 352
Query: 398 LQSLNYQGIGVNPWMQPRFDPAML-NMQTDMYQAVAAAALQDMRTVVDPSKQLPGSLLQF 456
L SLN+QG G+ PWMQ R DP +L N YQA+ A+ LQ++ + + ++ F
Sbjct: 353 LNSLNFQGSGLLPWMQQRMDPTLLANDHNQQYQAMFASGLQNLGS----GDLMRQQIMNF 520
Query: 457 QQPPNFPNRTAALMQAQMLQQSQP-QQAFQNNNQENQNLSQSQPQAQTNPQQHPQH--QH 513
QQP N+ ++ LQQ Q QQ+ +NN QPQAQ + QH Q
Sbjct: 521 QQPFNYLQQSGNPNPPLQLQQPQAIQQSVSSNN-------ILQPQAQVMAENLSQHLLQK 679
Query: 514 SFNNQLHHHSQQQQQTQQQVVDNNQQISGSVSTMSQFVSATQPQSPPPMQALSSLCHQQS 573
S NN+ QQQQ Q+ + + Q P P
Sbjct: 680 SHNNR--EDQTQQQQQQRHTYQDTVLLQSDQLHQRQHSGLPSPSYSKP-----------D 820
Query: 574 FSDSNVNSSTTIVSPLHSIMGSSFPHDESSLLMSLPRTSSWVPVQN--STGWPSKRIAVD 631
F DS++ + VSP +++GS P +LL +L R+S + + W K
Sbjct: 821 FLDSSMKFPAS-VSPGQNMLGSLCPEGSGNLL-NLSRSSQSMLTEQLPQQSWAPK---FT 985
Query: 632 PLLSSGASQCILPQVEQLGQARNSMSQNAITLPPFPGRECSIDQEGSN-DPQSNLLFGVN 690
PL Q+ G N++ + G++ ++ N D Q+ +LFGVN
Sbjct: 986 PL-----------QINAFG--------NSMQHVQYSGKDTAMVPPHCNPDSQNPILFGVN 1108
Query: 691 IDPSSLLLHNGMSNFKGISGNNNDSSTMSYHQS 723
ID S LLL + + S D+S M +S
Sbjct: 1109IDSSGLLLPTTVPRYTTASA-EIDASAMPIGES 1204
>TC217321 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, partial
(19%)
Length = 1135
Score = 265 bits (678), Expect = 5e-71
Identities = 154/260 (59%), Positives = 189/260 (72%), Gaps = 6/260 (2%)
Frame = +2
Query: 645 QVEQLGQARNSMSQNAITLPPFPGRECSIDQEGSNDPQSNLLFGVNIDPSSLLLHNGMSN 704
QVE LG +++++S+ A LPPFPGRE S G+ DPQSNLLFG+NIDPSSL+L +GMSN
Sbjct: 2 QVENLGTSQSNVSELA-ALPPFPGREHSA-YHGAADPQSNLLFGINIDPSSLMLQSGMSN 175
Query: 705 FKGISGNNNDSSTMSYHQSSSYMNTAGADSSLNHGVTPS--IGESGFLHTQENGEQGNNP 762
+ I G NDS ++ + +S+ G D L+ +T S + ESGFL EN +Q N P
Sbjct: 176 LRNI-GKVNDSLSLPF-STSNCGGATGTDFPLSSNMTTSSCVDESGFLQCSENVDQANIP 349
Query: 763 LNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGELEDPV--RSGWQLVFVDR 820
TFVKV+KSGSFGRSLDI+KFSSY+EL SELARMFGLEG+LEDP RSGWQLVFVDR
Sbjct: 350 TG-TFVKVHKSGSFGRSLDISKFSSYDELISELARMFGLEGQLEDPKTQRSGWQLVFVDR 526
Query: 821 ENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSN--SICDDYV 878
ENDVLLLGD PW EFVN+VW IKILSP EVQQMG GL S P +LS + CD+YV
Sbjct: 527 ENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGK-GLSPSTSAPGNKLSTPANSCDNYV 703
Query: 879 SRQDSRNLSSGITTVGSLDY 898
S+Q+ R+ +G+ ++GS Y
Sbjct: 704 SQQELRSSRNGMASMGSFHY 763
>AI443940 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (14%)
Length = 391
Score = 263 bits (671), Expect = 3e-70
Identities = 124/128 (96%), Positives = 125/128 (96%)
Frame = +3
Query: 48 NKEVDAHIPNYPSLPPQLICQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELG 107
NKEVDAHIPNYPSLPPQLICQLHN+TMHADVETDEVYAQMTLQPLN QEQ EAYLPAELG
Sbjct: 3 NKEVDAHIPNYPSLPPQLICQLHNMTMHADVETDEVYAQMTLQPLNPQEQNEAYLPAELG 182
Query: 108 TPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEW 167
T SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEW
Sbjct: 183 TASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEW 362
Query: 168 KFRHIFRG 175
KFRHIFRG
Sbjct: 363 KFRHIFRG 386
>TC234419 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, partial
(14%)
Length = 485
Score = 257 bits (657), Expect = 1e-68
Identities = 124/159 (77%), Positives = 140/159 (87%), Gaps = 1/159 (0%)
Frame = +3
Query: 332 STAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFH-GMKDDDFGMSSPLMW 390
STAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLP FH G+KDDDFG++S LMW
Sbjct: 12 STAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPLFHAGLKDDDFGINSSLMW 191
Query: 391 LRDTDRGLQSLNYQGIGVNPWMQPRFDPAMLNMQTDMYQAVAAAALQDMRTVVDPSKQLP 450
LRDTDRGL SLN+QGIGV+PWMQPR DP+M+N Q+DMYQA+AAAALQDM T +PSKQ P
Sbjct: 192 LRDTDRGLPSLNFQGIGVSPWMQPRLDPSMVNYQSDMYQAMAAAALQDMWT-SNPSKQHP 368
Query: 451 GSLLQFQQPPNFPNRTAALMQAQMLQQSQPQQAFQNNNQ 489
S +QFQQP NFPN+T+ LMQ Q+LQQS QQAF N+ +
Sbjct: 369 TSSIQFQQPQNFPNQTSPLMQTQLLQQSPSQQAFPNSQE 485
>TC212372 similar to GB|AAN46837.1|24111405|BT001072 At5g62000/mtg10_20
{Arabidopsis thaliana;} , partial (31%)
Length = 878
Score = 221 bits (562), Expect = 1e-57
Identities = 103/191 (53%), Positives = 137/191 (70%)
Frame = +1
Query: 13 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNL 72
ELWHACAGPLV++P RV YFPQGH EQV STN+ + H+P Y LPP+++C++ N+
Sbjct: 280 ELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVAEQHMPVY-DLPPKILCRVINV 456
Query: 73 TMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGF 132
+ A+ +TDEV+AQ+TL P Q++ P + + FCKTLTASDTSTHGGF
Sbjct: 457 MLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHSFCKTLTASDTSTHGGF 636
Query: 133 SVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSA 192
SV RR A++ PPLD ++QPP QEL+A+DLHGN W+FRHIFRGQP++HLL +GW+VFV+
Sbjct: 637 SVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFRGQPRKHLLQSGWNVFVTP 816
Query: 193 KRLVAGDSVLF 203
+ G + F
Sbjct: 817 XSXLLGMRLXF 849
>TC209860 similar to GB|AAB62404.1|2245390|ATU89296 auxin response
transcription factor 3 {Arabidopsis thaliana;} , partial
(32%)
Length = 687
Score = 219 bits (559), Expect = 3e-57
Identities = 110/195 (56%), Positives = 139/195 (70%), Gaps = 7/195 (3%)
Frame = +3
Query: 13 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNL 72
ELWHACAGP++SLP GS VVYFPQGH EQ D +P ++P + C++ ++
Sbjct: 123 ELWHACAGPMISLPKKGSVVVYFPQGHLEQHLH------DFPLPASANIPSHVFCRVLDV 284
Query: 73 TMHADVETDEVYAQMTLQPLNAQEQKEAYLPA-------ELGTPSKQPTNYFCKTLTASD 125
+HA+ +DEVY Q+ L P + Q+ +E A E S P + FCKTLTASD
Sbjct: 285 KLHAEEGSDEVYCQVVLVPESEQKLREGEFDADGEEEDAEAVMKSTTP-HMFCKTLTASD 461
Query: 126 TSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTG 185
TSTHGGFSVPRRAAE FPPLD+SQQ P+QEL+A+DLHG EW+FRHI+RGQP+RHLLTTG
Sbjct: 462 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTG 641
Query: 186 WSVFVSAKRLVAGDS 200
WS FV+ K+LV+GD+
Sbjct: 642 WSAFVNKKKLVSGDA 686
>TC226472 similar to UP|Q6L8U1 (Q6L8U1) Auxin response factor 3, partial
(10%)
Length = 493
Score = 160 bits (405), Expect(2) = 3e-55
Identities = 84/111 (75%), Positives = 96/111 (85%), Gaps = 1/111 (0%)
Frame = +1
Query: 656 MSQNAITLPPFPGRECSIDQEGSNDPQSNLLFGVNIDPSSLLLHNGMSNFKGISGNNNDS 715
MS NAITLPPFPGRE SIDQEGSNDPQ++LLFGVNIDPSSLL+ NGMS+ KG+SGNNN S
Sbjct: 169 MSLNAITLPPFPGRESSIDQEGSNDPQNHLLFGVNIDPSSLLMPNGMSSLKGVSGNNN-S 345
Query: 716 STMSYHQSSSYMN-TAGADSSLNHGVTPSIGESGFLHTQENGEQGNNPLNK 765
ST+ Y QSS+Y+N T G DSSLNHG+TP+IG+SGFLH E+ QG NPLNK
Sbjct: 346 STLPY-QSSNYLNTTTGTDSSLNHGMTPNIGDSGFLHCPEDAGQG-NPLNK 492
Score = 74.3 bits (181), Expect(2) = 3e-55
Identities = 30/39 (76%), Positives = 37/39 (93%)
Frame = +2
Query: 605 LMSLPRTSSWVPVQNSTGWPSKRIAVDPLLSSGASQCIL 643
++ LPRTSSW+P+QNS+GWPSKR+AVDPLLSSGAS C+L
Sbjct: 11 ILDLPRTSSWIPIQNSSGWPSKRVAVDPLLSSGASHCVL 127
>TC227705 similar to GB|AAM91657.1|22136676|AY133723 auxin response factor 1
{Arabidopsis thaliana;} , partial (54%)
Length = 1772
Score = 204 bits (519), Expect = 1e-52
Identities = 106/202 (52%), Positives = 140/202 (68%), Gaps = 1/202 (0%)
Frame = +3
Query: 173 FRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSS 232
F GQPKRHLLTTGWSVFVS+K+L AGD+ +F+ E +L +G+RR R Q+ +PSSV+SS
Sbjct: 159 FPGQPKRHLLTTGWSVFVSSKKLAAGDAFIFLRGENGELRVGVRRVMRQQSNVPSSVISS 338
Query: 233 DSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLF 292
SMHLG+LA A+HA AT + F++FY PR SEF++ + KY++ H ++SVGMRF+M F
Sbjct: 339 HSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEVQSH-KLSVGMRFKMRF 515
Query: 293 ETEESSVRRYMGTITGICD-LDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT 351
E +E RR+ GTI G+ D S WP+S WRS+KV WDE ++ R RVS WE+EPL +
Sbjct: 516 EGDEIPERRFSGTIVGVGDNKSSSVWPDSEWRSLKVQWDEPSSIMRPDRVSSWELEPLVS 695
Query: 352 FPMYPSPFPLRLKRPWPPGLPS 373
+ S R KR P LPS
Sbjct: 696 TTLANSQTTQRNKRARPLILPS 761
Score = 72.8 bits (177), Expect = 6e-13
Identities = 49/201 (24%), Positives = 98/201 (48%), Gaps = 1/201 (0%)
Frame = +3
Query: 654 NSMSQNAITLPPFPGRECSIDQEGSNDPQSNLLFGVNIDPSSLLLHNGMSNFKGISGNNN 713
N M N ++ +E ++G+ + LFG+ + +S N N + ++ +
Sbjct: 954 NRMENNLESISAIALKEAGEKRQGTGN--GCRLFGIQLLENS----NAEGNLQTVTLSGR 1115
Query: 714 DSSTMSYHQSSSYMNTAGADSSLNHGVTPSIGESGFLHTQENGEQGNNPLNKTFVKVYKS 773
S + + S+ N PS+ ++ ++ + ++ KV+
Sbjct: 1116 VGDDRSVPSLDAESDQHSEPSNANRSDIPSVSCDAEKSCLQSPQESQSKQIRSCTKVHMQ 1295
Query: 774 G-SFGRSLDITKFSSYNELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPW 832
G + GR++D+T+F Y +L +L MF ++ EL ++ WQ+V+ D E+D++++GD PW
Sbjct: 1296 GMAVGRAVDLTRFDGYEDLLRKLEDMFNIKTELCGSLKK-WQVVYTDNEDDMMMVGDDPW 1472
Query: 833 PEFVNSVWCIKILSPEEVQQM 853
EF + V I I + EEV+++
Sbjct: 1473 DEFCSVVRKIFIYTAEEVKKL 1535
>TC224267 similar to UP|Q6L8U3 (Q6L8U3) Auxin response factor 1, partial
(13%)
Length = 421
Score = 169 bits (427), Expect(2) = 3e-49
Identities = 85/116 (73%), Positives = 99/116 (85%)
Frame = +3
Query: 214 GIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKY 273
GI+RA+R Q + SSV+SSDSMH+G+LAAAAHAA+ NS FTIFYNPRA PSEFVIPLAKY
Sbjct: 6 GIKRANRQQPALFSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKY 185
Query: 274 VKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGW 329
KA+++ +VS+GMRFRM+FETEES VRRYMGTITGI DLD VRW NS WR+ GW
Sbjct: 186 NKALFN-QVSLGMRFRMMFETEESGVRRYMGTITGITDLDPVRWKNSQWRNXS-GW 347
Score = 46.2 bits (108), Expect(2) = 3e-49
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 325 VKVGWDESTAGERQPRVSLWEIEPLTTF 352
++VGWDEST GER RVS+W+IEP+ T+
Sbjct: 337 LQVGWDESTGGERPSRVSIWDIEPVVTW 420
>BG507596 homologue to GP|9757747|dbj auxin response factor 4 {Arabidopsis
thaliana}, partial (15%)
Length = 433
Score = 190 bits (483), Expect = 2e-48
Identities = 87/129 (67%), Positives = 107/129 (82%)
Frame = +3
Query: 108 TPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEW 167
TP+K + FCKTLTASDTSTHGGFSVPRRAAE FPPLD+ +Q P+QEL+A+DLHG EW
Sbjct: 45 TPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKKQRPSQELVAKDLHGVEW 224
Query: 168 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPS 227
KFRHI+RGQP+RHLLTTGWS+FVS K LV+GD+VLF+ E +L LGIRRA+RP+ +P
Sbjct: 225 KFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPE 404
Query: 228 SVLSSDSMH 236
S++ S S +
Sbjct: 405 SIVGSQSYY 431
>TC207358 similar to UP|ARFH_ARATH (Q9FGV1) Auxin response factor 8, partial
(13%)
Length = 924
Score = 190 bits (483), Expect = 2e-48
Identities = 110/223 (49%), Positives = 142/223 (63%), Gaps = 2/223 (0%)
Frame = +1
Query: 678 SNDPQSNLLFGVNIDPSSLLLHNGMSNFKGISGNNNDSSTMSYHQSS--SYMNTAGADSS 735
++D Q+ +LFGVNID S LLL + + S ++ D+S M +S S + G DSS
Sbjct: 148 NSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADS-DASAMPLGESGFQSPLYPCGQDSS 324
Query: 736 LNHGVTPSIGESGFLHTQENGEQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSEL 795
Q G+ +TFVKVYKSGS GRSLDI++FSSY+ELR EL
Sbjct: 325 EL--------------VQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREEL 462
Query: 796 ARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGN 855
A+MFG+EG+LEDP+RSGWQLVFVDRENDVLLLGD PW FVN+VW IKILSPE++ +MG
Sbjct: 463 AQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIHKMGE 642
Query: 856 TGLGLLNSVPIQRLSNSICDDYVSRQDSRNLSSGITTVGSLDY 898
L L P QRL++ + DS + SG+ ++GSL+Y
Sbjct: 643 QALESLGPSPGQRLNS-------TGADSHEIVSGLPSIGSLEY 750
>BU082018 weakly similar to GP|23093517|gb CG32133-PA {Drosophila
melanogaster}, partial (1%)
Length = 421
Score = 173 bits (438), Expect = 3e-43
Identities = 99/141 (70%), Positives = 112/141 (79%), Gaps = 9/141 (6%)
Frame = +3
Query: 511 HQHSFNNQLHHH---SQQQQ----QTQQQVVDNNQQISGSVSTMSQFVSATQPQSPPPMQ 563
HQHSFNNQ HH QQQQ Q QQQ V ++QQIS VSTMSQFVSA Q QSPP MQ
Sbjct: 3 HQHSFNNQNQHHLLPQQQQQPQQPQLQQQQVVDHQQISSVVSTMSQFVSAAQSQSPP-MQ 179
Query: 564 ALSSLCHQQSFSDSNVNSSTT-IVSPLHSIMGSSFPHDESSLLMSLPRTSSWVPVQNSTG 622
A+SSL HQQSFSDSN N +TT IVSPLHSI+ SFP D++S L+SLPR++SWVPVQ+ST
Sbjct: 180 AISSLGHQQSFSDSNGNPTTTAIVSPLHSIL-DSFPQDDTSHLLSLPRSTSWVPVQHSTA 356
Query: 623 W-PSKRIAVDPLLSSGASQCI 642
W PSKR+ VDPLLSSGASQC+
Sbjct: 357 WPPSKRVVVDPLLSSGASQCV 419
>BI469301 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (15%)
Length = 422
Score = 161 bits (408), Expect = 1e-39
Identities = 77/82 (93%), Positives = 79/82 (95%), Gaps = 1/82 (1%)
Frame = +3
Query: 96 EQKEAYL-PAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPA 154
+QKE YL PAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLD+SQQPPA
Sbjct: 177 KQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPA 356
Query: 155 QELIARDLHGNEWKFRHIFRGQ 176
QELIARDLH NEWKFRHIFRGQ
Sbjct: 357 QELIARDLHDNEWKFRHIFRGQ 422
Score = 117 bits (293), Expect = 2e-26
Identities = 59/87 (67%), Positives = 67/87 (76%), Gaps = 6/87 (6%)
Frame = +1
Query: 36 PQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADVETDEVYAQMTLQPLNAQ 95
PQGHSEQVA STN+EVDAHIPNYP+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+
Sbjct: 1 PQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPS 180
Query: 96 EQK------EAYLPAELGTPSKQPTNY 116
+++ LPA S QPT +
Sbjct: 181 KRRCICCLQNWVLPA-----SNQPTTF 246
>BG790017 similar to PIR|T08917|T08 auxin response factor 9 - Arabidopsis
thaliana, partial (21%)
Length = 440
Score = 157 bits (397), Expect = 2e-38
Identities = 77/130 (59%), Positives = 97/130 (74%)
Frame = +1
Query: 103 PAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDL 162
PAEL P + FCK LTASDTSTHGGFSV R+ A + P LD S+ P QEL+A+DL
Sbjct: 55 PAELPRPR---VHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDL 225
Query: 163 HGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQ 222
G EW+F+HIFRGQP+RHLLTTGWS FV++KRLVAGD+ +F+ +L +G+RR + Q
Sbjct: 226 QGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRIAPLQ 405
Query: 223 TVMPSSVLSS 232
+ MPSSV+SS
Sbjct: 406 SSMPSSVISS 435
>TC204478 similar to UP|ARFB_ARATH (Q94JM3) Auxin response factor 2
(ARF1-binding protein) (ARF1-BP), partial (37%)
Length = 1975
Score = 143 bits (361), Expect = 3e-34
Identities = 74/150 (49%), Positives = 102/150 (67%), Gaps = 1/150 (0%)
Frame = +3
Query: 225 MPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSV 284
+PSSV+SS SMHLG+LA A HA T + FT++Y PR P+EF++P +Y++++ + ++
Sbjct: 9 VPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNN-YTI 185
Query: 285 GMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLW 344
GMRF+M FE EE+ +R+ GTI GI D D+ RWP S WRS+KV WDE++ R RVS W
Sbjct: 186 GMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLKVRWDETSNIPRPERVSQW 365
Query: 345 EIEPLTTFP-MYPSPFPLRLKRPWPPGLPS 373
+IEP P + P P P R KRP +PS
Sbjct: 366 KIEPALAPPALNPLPMP-RPKRPRSNVVPS 452
Score = 75.5 bits (184), Expect = 1e-13
Identities = 53/182 (29%), Positives = 91/182 (49%), Gaps = 14/182 (7%)
Frame = +3
Query: 665 PFPGRECSIDQEGSNDPQSNLLFGVNIDPSSLLLHNGMSNFKGISGNNNDSSTMSY-HQS 723
P G+ C + + +D + LFG+ SLL +++ +S N S ++ + H +
Sbjct: 1092 PISGKPCEVSKLKDSDCK---LFGI-----SLLSSRPIASEPSLSQRNVTSESVGHMHTA 1247
Query: 724 SSYMNTAGADSSLNH--GVTPSIG----------ESGFLHTQENGEQGNNPLNKTFVKVY 771
S + D H G P+ G ++ H ++ + ++ ++ KV+
Sbjct: 1248 SHHQRAIENDQKSEHSRGSKPADGLLIDDHEKVLQTSQPHLKDVQAKSHSGSARSCTKVH 1427
Query: 772 KSG-SFGRSLDITKFSSYNELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDG 830
K G + GRS+D+TKFS Y EL +EL ++F GEL P + W +V+ D E D++L+GD
Sbjct: 1428 KKGIALGRSVDLTKFSDYGELITELDQLFEFGGELTSP-QKDWLIVYTDNEGDMMLVGDD 1604
Query: 831 PW 832
PW
Sbjct: 1605 PW 1610
>TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 (Fragment),
partial (26%)
Length = 658
Score = 135 bits (340), Expect = 8e-32
Identities = 80/220 (36%), Positives = 112/220 (50%), Gaps = 44/220 (20%)
Frame = +2
Query: 143 FPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 202
FP LD+S PP Q ++A+D+HG WKFRHI+RG P+RHLLTTGWS FV+ K+L AGDS++
Sbjct: 2 FPRLDYSVDPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLFAGDSIV 181
Query: 203 FIWNEKNQLLLGIRRASR------------------------------------------ 220
F+ E L +GIRRA +
Sbjct: 182 FLRAENGDLCVGIRRAKKGICGGLETSSGWNPAGGNCHIPYGGFSPFFREDDNRISRNGN 361
Query: 221 PQTVMPS-SVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYH 279
+ PS S++ + ++ A++ AA F + Y PRA EF + A V+A
Sbjct: 362 SNGLNPSVSMMGKGKVRPEAVSEASNLAANKKPFEVVYYPRASTPEFCVK-ASLVEAALQ 538
Query: 280 TRVSVGMRFRMLFETEESS-VRRYMGTITGICDLDSVRWP 318
R G+RF+M FETE+SS + +MGTI+ D + WP
Sbjct: 539 IRWCSGIRFKMAFETEDSSRISWFMGTISSAQVADPLNWP 658
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.130 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,644,122
Number of Sequences: 63676
Number of extensions: 665852
Number of successful extensions: 6058
Number of sequences better than 10.0: 269
Number of HSP's better than 10.0 without gapping: 5182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5600
length of query: 898
length of database: 12,639,632
effective HSP length: 106
effective length of query: 792
effective length of database: 5,889,976
effective search space: 4664860992
effective search space used: 4664860992
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC144478.5