TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144475.2 - phase: 0 /pseudo
         (656 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204167 weakly similar to UP|O22209 (O22209) Expressed protein,...    35  0.11
BI469978 homologue to GP|27808562|gb| At3g52790 {Arabidopsis tha...    31  1.5
TC229761 similar to UP|Q9C566 (Q9C566) Cyclophilin-40 (Expressed...    30  2.6
TC211282 UP|C7D9_SOYBN (O81971) Cytochrome P450 71D9  (P450 CP3)...    30  3.4
TC234497 similar to UP|Q94G16 (Q94G16) HCF106, partial (40%)           30  4.4
TC227210 similar to UP|Q8VYV8 (Q8VYV8) At1g12570/T12C24_9, parti...    28  9.9

>TC204167 weakly similar to UP|O22209 (O22209) Expressed protein, partial
           (56%)
          Length = 1770

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = -1

Query: 318 FLVLLEIGTLISS*ITCQLTLLIKF-LRFQSLMMMMVQTLLGGVEPIP-TISQFKVLILC 375
           F   +E+   +SS    QL  L+K   R +S    +  TLLGG+  +P +++ FK LIL 
Sbjct: 963 FFSSVEVWDRVSS--ESQLLELLKMRARARSYSTFLSSTLLGGLLFLPASLASFK-LILL 793

Query: 376 NIKIARFWKVTGKVFGSGMAHIASKPLFGWLRTSAFLQI 414
            + +   +  +G  F + +A I+ K   G+L ++ FL I
Sbjct: 792 GLGLMAIFIFSGLSFSNCLAGISDKRTMGYLLSAIFLTI 676


>BI469978 homologue to GP|27808562|gb| At3g52790 {Arabidopsis thaliana},
           partial (25%)
          Length = 421

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 70  IKLVYISPRMLIPNFARIFYITQGLIRLIAWACILGLILLL 110
           + LVYI+P++++ N     YI   +   I+W C+L + ++L
Sbjct: 128 LPLVYITPQVIMANGMGFKYI**SMAEKISWCCVLFMAIIL 250


>TC229761 similar to UP|Q9C566 (Q9C566) Cyclophilin-40 (Expressed protein),
           partial (23%)
          Length = 523

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 12/43 (27%), Positives = 24/43 (54%)
 Frame = -3

Query: 18  FLCAQAGMVHKYLIYFLLMIYFFLQRPQLNRLIVFCIALIFFV 60
           ++  Q+G +HK   Y+ +++Y F  R +L+ +     A  FF+
Sbjct: 296 YMLQQSGCLHKPECYWNILLYAFFSRSRLSAIFFLAAASSFFI 168


>TC211282 UP|C7D9_SOYBN (O81971) Cytochrome P450 71D9  (P450 CP3) , complete
          Length = 1573

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = -2

Query: 326  TLISS*ITCQLTLLIKFLRFQSLMMMMVQTLLGGVEPIPTISQFKVLILCNIKIARFWKV 385
            TL++S   C  ++++ FL   ++  +MV   +    P P ISQ   LIL ++K   F+K 
Sbjct: 1014 TLLTS--VCTFSIVLGFLIISAIAHVMVADDVS--LPPPKISQITALILSSLKPNSFFKS 847

Query: 386  TGK 388
            T K
Sbjct: 846  TSK 838


>TC234497 similar to UP|Q94G16 (Q94G16) HCF106, partial (40%)
          Length = 590

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
 Frame = -3

Query: 348 LMMMMVQTLLGGVEPIPTISQFKVLILCNIKI-------ARFWKVTGKVFGS------GM 394
           L + ++ T LG   P+   S+   L+LCN+KI       +R W+      GS      G+
Sbjct: 267 LDLRLIVTFLGRCLPLMLCSRCLQLLLCNLKILLRAVCFSRIWRAIRVNSGSG**SWCGI 88

Query: 395 AHIASKPLFGW 405
           A++    + GW
Sbjct: 87  AYVGIVCVLGW 55


>TC227210 similar to UP|Q8VYV8 (Q8VYV8) At1g12570/T12C24_9, partial (72%)
          Length = 1574

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 19/55 (34%), Positives = 27/55 (48%), Gaps = 10/55 (18%)
 Frame = -2

Query: 382  FWKVTGKVFGSGMAHIASK----------PLFGWLRTSAFLQISKGVNGVVEYLL 426
            FW+ TGKVF +G  ++A+K           L+G  R         GV+GVV + L
Sbjct: 1186 FWRTTGKVFTTGSFNVAAKTGDAHHLNQRDLYGDRRRD-----KDGVHGVVSHSL 1037


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.356    0.161    0.537 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,470,760
Number of Sequences: 63676
Number of extensions: 412972
Number of successful extensions: 5160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2901
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 2133
Number of HSP's gapped (non-prelim): 3253
length of query: 656
length of database: 12,639,632
effective HSP length: 103
effective length of query: 553
effective length of database: 6,081,004
effective search space: 3362795212
effective search space used: 3362795212
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 62 (28.5 bits)