
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144474.14 - phase: 1 /pseudo
(42 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227609 similar to UP|Q9M582 (Q9M582) Hypersensitive-induced re... 27 3.1
TC227607 homologue to UP|Q9FM19 (Q9FM19) Hypersensitive-induced ... 27 3.1
TC214328 similar to UP|Q7QHT5 (Q7QHT5) AgCP6936, partial (18%) 25 9.0
TC209270 25 9.0
>TC227609 similar to UP|Q9M582 (Q9M582) Hypersensitive-induced response
protein, partial (81%)
Length = 777
Score = 26.6 bits (57), Expect = 3.1
Identities = 10/24 (41%), Positives = 19/24 (78%)
Frame = -3
Query: 5 TSIVFLHSLLLLHLYQFPNHRCLS 28
+SI F+HS L +H++ + N++CL+
Sbjct: 577 SSIDFIHSPLHMHIWIYINNQCLN 506
>TC227607 homologue to UP|Q9FM19 (Q9FM19) Hypersensitive-induced response
protein, partial (50%)
Length = 927
Score = 26.6 bits (57), Expect = 3.1
Identities = 10/24 (41%), Positives = 19/24 (78%)
Frame = -2
Query: 5 TSIVFLHSLLLLHLYQFPNHRCLS 28
+SI F+HS L +H++ + N++CL+
Sbjct: 92 SSIDFIHSPLHMHIWIYINNQCLN 21
>TC214328 similar to UP|Q7QHT5 (Q7QHT5) AgCP6936, partial (18%)
Length = 907
Score = 25.0 bits (53), Expect = 9.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 10 LHSLLLLHLYQFPN 23
LH L LHL+QFPN
Sbjct: 448 LHLLKSLHLFQFPN 407
>TC209270
Length = 660
Score = 25.0 bits (53), Expect = 9.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 5 TSIVFLHSLLLLHLYQFPNH 24
T +FL ++LL HL+ F +H
Sbjct: 483 TKFIFLANILLFHLWTFVSH 542
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,636,940
Number of Sequences: 63676
Number of extensions: 28655
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of query: 42
length of database: 12,639,632
effective HSP length: 18
effective length of query: 24
effective length of database: 11,493,464
effective search space: 275843136
effective search space used: 275843136
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC144474.14