Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144474.14 - phase: 1 /pseudo
         (42 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC227609 similar to UP|Q9M582 (Q9M582) Hypersensitive-induced re...    27  3.1
TC227607 homologue to UP|Q9FM19 (Q9FM19) Hypersensitive-induced ...    27  3.1
TC214328 similar to UP|Q7QHT5 (Q7QHT5) AgCP6936, partial (18%)         25  9.0
TC209270                                                               25  9.0

>TC227609 similar to UP|Q9M582 (Q9M582) Hypersensitive-induced response
           protein, partial (81%)
          Length = 777

 Score = 26.6 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 19/24 (78%)
 Frame = -3

Query: 5   TSIVFLHSLLLLHLYQFPNHRCLS 28
           +SI F+HS L +H++ + N++CL+
Sbjct: 577 SSIDFIHSPLHMHIWIYINNQCLN 506


>TC227607 homologue to UP|Q9FM19 (Q9FM19) Hypersensitive-induced response
          protein, partial (50%)
          Length = 927

 Score = 26.6 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 19/24 (78%)
 Frame = -2

Query: 5  TSIVFLHSLLLLHLYQFPNHRCLS 28
          +SI F+HS L +H++ + N++CL+
Sbjct: 92 SSIDFIHSPLHMHIWIYINNQCLN 21


>TC214328 similar to UP|Q7QHT5 (Q7QHT5) AgCP6936, partial (18%)
          Length = 907

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 10  LHSLLLLHLYQFPN 23
           LH L  LHL+QFPN
Sbjct: 448 LHLLKSLHLFQFPN 407


>TC209270 
          Length = 660

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 5   TSIVFLHSLLLLHLYQFPNH 24
           T  +FL ++LL HL+ F +H
Sbjct: 483 TKFIFLANILLFHLWTFVSH 542


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.328    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,636,940
Number of Sequences: 63676
Number of extensions: 28655
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of query: 42
length of database: 12,639,632
effective HSP length: 18
effective length of query: 24
effective length of database: 11,493,464
effective search space: 275843136
effective search space used: 275843136
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)


Medicago: description of AC144474.14