BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144459.10 + phase: 0
(167 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW703646 82 1e-16
CO981049 73 6e-14
TC229119 55 2e-08
BM307869 weakly similar to GP|20145851|emb auxin response factor... 48 2e-06
TC227524 weakly similar to UP|Q940T7 (Q940T7) At1g02270/T6A9_9, ... 30 0.54
TC212558 29 1.2
TC220541 similar to UP|Q6NKN2 (Q6NKN2) At3g23540, partial (15%) 28 2.0
TC217290 weakly similar to UP|WR46_ARATH (Q9SKD9) Probable WRKY ... 28 2.0
TC217291 similar to UP|WR30_ARATH (Q9FL62) Probable WRKY transcr... 28 2.7
TC214903 similar to UP|Q9T0M9 (Q9T0M9) Sucrose synthase , parti... 27 3.5
TC227884 27 4.6
TC229118 similar to UP|Q6R2U8 (Q6R2U8) Reduced vernalization res... 27 6.0
TC204006 homologue to UP|Q9FF57 (Q9FF57) Similarity to lysophosp... 27 6.0
TC228674 similar to GB|AAO44074.1|28466931|BT004808 At5g11090 {A... 26 7.8
TC226956 similar to UP|Q9FQZ6 (Q9FQZ6) Avr9/Cf-9 rapidly elicite... 26 7.8
TC224774 26 7.8
BE608294 26 7.8
TC217689 26 7.8
TC229117 similar to UP|Q8L3W1 (Q8L3W1) Reduced vernalization res... 26 7.8
>AW703646
Length = 422
Score = 82.0 bits (201), Expect = 1e-16
Identities = 35/86 (40%), Positives = 55/86 (63%)
Frame = +2
Query: 11 IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
IP++F+ ++G L N + P+G WKM LKKR ++F W+EF EY+S+ +G +
Sbjct: 41 IPNKFVKKYGKRLQNTLFLKTPNGAEWKMILKKRDGKIWFQKGWKEFAEYHSLAHGHLLV 220
Query: 71 FKYEGNSKFSVIIFDATSVEISYPFE 96
F+++ S F V IFD +++EI YP E
Sbjct: 221 FRWDVTSHFQVHIFDLSALEIEYPTE 298
>CO981049
Length = 665
Score = 73.2 bits (178), Expect = 6e-14
Identities = 30/77 (38%), Positives = 51/77 (65%)
Frame = -2
Query: 18 RFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFISFKYEGNS 77
++G L+N + +P+G W++ L+KR V+F W++FVE++S+ +G + FKY+G
Sbjct: 661 KYGKHLSNTMFLKLPNGAEWRVNLEKRDGRVWFQEGWKKFVEHHSLAHGHLLVFKYDGTF 482
Query: 78 KFSVIIFDATSVEISYP 94
F V+IFD ++ EI YP
Sbjct: 481 HFHVLIFDPSANEIDYP 431
>TC229119
Length = 455
Score = 55.1 bits (131), Expect = 2e-08
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +2
Query: 50 FCNKWQEFVEYYSIGYGCFISFKYEGNSKFSVIIFDATSVEISYPFETPSTN-GEPKTNY 108
F + WQ+FV++YSIG G F+ F YEGNS F V IF+ ++ E++Y + N G NY
Sbjct: 5 FVDGWQDFVQHYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEVNYQSAMRNRNEGSCLANY 184
>BM307869 weakly similar to GP|20145851|emb auxin response factor 36
{Arabidopsis thaliana}, partial (8%)
Length = 437
Score = 48.1 bits (113), Expect = 2e-06
Identities = 21/71 (29%), Positives = 37/71 (51%)
Frame = +2
Query: 11 IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
+P F +L T+ P G VW + + R + ++F + W++FV+ + + F+
Sbjct: 224 LPKAFSDNLKKKLPENVTLKGPGGVVWNIGMTTRDDTLYFAHGWEQFVKDHCLKENDFLV 403
Query: 71 FKYEGNSKFSV 81
FKY G S+F V
Sbjct: 404 FKYNGESQFDV 436
>TC227524 weakly similar to UP|Q940T7 (Q940T7) At1g02270/T6A9_9, partial (46%)
Length = 1225
Score = 30.0 bits (66), Expect = 0.54
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 7 LMQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYG 66
L I D IT +G T V D KM++KK V+ K +EY+S+GY
Sbjct: 1114 LQTHIQDRLITNYG------MTCLVKDP---KMKVKKIITLVYPYTKLVPKIEYFSVGYT 962
Query: 67 CFISFKYEG 75
+ F + G
Sbjct: 961 LYFHFSFFG 935
>TC212558
Length = 620
Score = 28.9 bits (63), Expect = 1.2
Identities = 13/41 (31%), Positives = 21/41 (50%), Gaps = 6/41 (14%)
Frame = -1
Query: 33 DGRVWKMELKKRG------ENVFFCNKWQEFVEYYSIGYGC 67
+GR+W + +KKR E+ FC +W + Y + GC
Sbjct: 308 NGRIWYLRVKKRRRRKKKKESCCFCQEWLRRMVKYMVLAGC 186
>TC220541 similar to UP|Q6NKN2 (Q6NKN2) At3g23540, partial (15%)
Length = 1191
Score = 28.1 bits (61), Expect = 2.0
Identities = 17/49 (34%), Positives = 26/49 (52%)
Frame = +1
Query: 90 EISYPFETPSTNGEPKTNYPSSRKRSKVETCERLRKKVKNMSKYASKRV 138
EIS P ET S++ + T+ S S E CE L+ + ++S S+ V
Sbjct: 646 EISRPVETESSSLKHTTDSKSKTTSSTAEECEPLKGESNSISVNHSQNV 792
>TC217290 weakly similar to UP|WR46_ARATH (Q9SKD9) Probable WRKY
transcription factor 46 (WRKY DNA-binding protein 46),
partial (28%)
Length = 1151
Score = 28.1 bits (61), Expect = 2.0
Identities = 22/60 (36%), Positives = 27/60 (44%), Gaps = 6/60 (10%)
Frame = -1
Query: 78 KFSVIIFDATSVE---ISYPFETPSTNGEPKT---NYPSSRKRSKVETCERLRKKVKNMS 131
KFS+ +F E + PF PS NGE K N S S + T KVKN+S
Sbjct: 665 KFSIKLFSIMVYEKRLLLSPFSDPSFNGEEKQNDGNMSSLWSMSSILTSRPEDPKVKNVS 486
>TC217291 similar to UP|WR30_ARATH (Q9FL62) Probable WRKY transcription
factor 30 (WRKY DNA-binding protein 30), partial (21%)
Length = 1108
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 53 KWQEFVEYYSIGYGCFISFKYEGNSKFSVIIFDATSVEISYPFETPSTNGEPKTN 107
+WQ+ + S G + + FS+++++ + +S PF P+ +GE K N
Sbjct: 782 QWQKVFDSISEVVGDMKAGEKLSIKLFSIMVYENMLLLLSSPFSDPTIDGEEKQN 618
>TC214903 similar to UP|Q9T0M9 (Q9T0M9) Sucrose synthase , partial (78%)
Length = 2572
Score = 27.3 bits (59), Expect = 3.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 94 PFETPSTNGEPKTNYPSSRKRSKVETCERLRK 125
PFE PST+ K Y + R S C R+
Sbjct: 1076 PFELPSTSSSLKRRYSAGRSSSTTSMCTFTRR 981
>TC227884
Length = 1152
Score = 26.9 bits (58), Expect = 4.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 41 LKKRGENVFFCNKWQEFVEYYSIGYGCFISFKYEG 75
L ++ + + KW+ FVE S G G +FK EG
Sbjct: 461 LDQKKQQLSVSRKWKAFVETVSQGNGISNNFKLEG 357
>TC229118 similar to UP|Q6R2U8 (Q6R2U8) Reduced vernalization response 1,
partial (17%)
Length = 470
Score = 26.6 bits (57), Expect = 6.0
Identities = 13/56 (23%), Positives = 23/56 (40%)
Frame = +3
Query: 11 IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYG 66
+P F + N ++ + + +GR W + RG W EF ++G G
Sbjct: 15 LPSTFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEG 182
>TC204006 homologue to UP|Q9FF57 (Q9FF57) Similarity to lysophosphatidic acid
acyltransferase, partial (43%)
Length = 786
Score = 26.6 bits (57), Expect = 6.0
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Frame = +3
Query: 110 SSRKRSKVETCERLRKKVKNMSKYASKRVEDAAKELNPNNPYFR-------SKIVKGKYA 162
S +KRS+ TC R R N S + SK K + NN R K V G+
Sbjct: 171 SKKKRSRCRTCRRFR----NHSYHRSKTFSGERKNKHTNNKRRR*RRRRTSHKEVFGRDD 338
Query: 163 VRFL 166
V+FL
Sbjct: 339 VQFL 350
>TC228674 similar to GB|AAO44074.1|28466931|BT004808 At5g11090 {Arabidopsis
thaliana;} , partial (52%)
Length = 682
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 97 TPSTNGEPKTNYPSSRKRSKVETCERLRKK 126
+PST P+T SSR + + RLR+K
Sbjct: 294 SPSTGPSPRTGATSSRGSTSITATLRLRRK 383
>TC226956 similar to UP|Q9FQZ6 (Q9FQZ6) Avr9/Cf-9 rapidly elicited protein
146, partial (33%)
Length = 835
Score = 26.2 bits (56), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (72%)
Frame = -2
Query: 23 LNNVATITVPDGRVWKMEL 41
+NN+ T+ + GR+W +E+
Sbjct: 699 INNIITLVINKGRIWNVEM 643
>TC224774
Length = 806
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 51 CNKWQEFVEYYSIGYGCFISFKYEGNSKFSVIIFDATS 88
C+ + + +Y I Y CF Y G +FD TS
Sbjct: 157 CSSFFFYFSFYFITYICFCHSPYHGYIAGLAFVFDLTS 270
>BE608294
Length = 457
Score = 26.2 bits (56), Expect = 7.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 41 LKKRGE--NVFFCNKWQEFVEYYSIGYGCFISFK 72
LK R E N+F C + +YY IG+ + FK
Sbjct: 201 LKIRPEH*NLFACYSFATLGQYYMIGFSLLVQFK 302
>TC217689
Length = 668
Score = 26.2 bits (56), Expect = 7.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 50 FCNKWQEFVEYYSIGYGCFISFKYEGNSKFSVIIFDATSV 89
FCN +F+ +Y + CF F + G+S + I F +T V
Sbjct: 464 FCNFLSDFLVFYHSSHVCFFLFLF-GSSMSASISFLSTVV 580
>TC229117 similar to UP|Q8L3W1 (Q8L3W1) Reduced vernalization response 1,
partial (38%)
Length = 904
Score = 26.2 bits (56), Expect = 7.8
Identities = 14/63 (22%), Positives = 25/63 (39%)
Frame = +3
Query: 4 YHFLMQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSI 63
Y + +P F + N ++ + + +GR W + RG W EF ++
Sbjct: 405 YRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNL 584
Query: 64 GYG 66
G G
Sbjct: 585 GEG 593
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,729,623
Number of Sequences: 63676
Number of extensions: 98637
Number of successful extensions: 608
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of query: 167
length of database: 12,639,632
effective HSP length: 90
effective length of query: 77
effective length of database: 6,908,792
effective search space: 531976984
effective search space used: 531976984
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC144459.10