TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144431.6 - phase: 0 
         (377 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CO985741                                                              166  2e-41
TC208526 similar to UP|Q6YW97 (Q6YW97) MAP3K protein kinase-like...    62  4e-10
TC232369 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, part...    31  1.0
CO985160                                                               31  1.0
BI316991 weakly similar to GP|28144147|gb| PDZ-LIM protein cyphe...    30  1.8
TC222469                                                               29  3.0
TC216000 similar to UP|O22253 (O22253) Photolyase/blue-light rec...    28  6.8
BI969815 weakly similar to GP|9757860|dbj exonuclease-like prote...    28  8.9

>CO985741 
          Length = 761

 Score =  166 bits (420), Expect = 2e-41
 Identities = 103/181 (56%), Positives = 119/181 (64%)
 Frame = -2

Query: 197 KAFLSRGNTS*KTNMEMKVCSRVLVRIEMNRHQ*TQNLGH*F**TFFILHRIVLRPVATI 256
           +A L  G+T *KTNMEM     VLV+   N  Q*TQ+L H F  T FIL +I LRP  TI
Sbjct: 760 RALLISGHT**KTNMEMMA*KLVLVQAVQNHPQ*TQSLDHWFWSTTFILLQIDLRPALTI 581

Query: 257 QLHYSAC*RLAMKRPATDGQISLLLIII*GVMVEEYHKLLMQQMVVSLVDVTALLIARQM 316
           +LHY   *RL  K+PAT G ISLLLII  GVM EE+H  LM+QMV+SL  VT L IAR+ 
Sbjct: 580 RLHYLT**RLVTKQPATVGPISLLLIITRGVMAEEHH*PLMKQMVISLAGVTTLPIARKT 401

Query: 317 VRLVHVMSLQFLHLHLLQKLHLMETRNLLIIVKQAMHIVVEQL**CNWLC*LWLPQLSWH 376
           + L HVMSL FLHLHLLQK    ET    I + Q M I+VE+  *CN L   WL +LSWH
Sbjct: 400 LSLAHVMSLPFLHLHLLQKPPPPETSRPKITITQTMLILVERPS*CNRLLEFWLRRLSWH 221

Query: 377 G 377
           G
Sbjct: 220 G 218


>TC208526 similar to UP|Q6YW97 (Q6YW97) MAP3K protein kinase-like protein,
           partial (59%)
          Length = 1214

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 84/262 (32%), Positives = 114/262 (43%), Gaps = 7/262 (2%)
 Frame = +3

Query: 86  CMIFKTMYGCVILLEANVSTSVHSYLQ*TRLGTCVHFWTQIHLK*SPSLLRIMLELLQP* 145
           C   + +YG V     N +TS+H   Q        H   +I L+ SPS L+ M  L + *
Sbjct: 30  CTTSRMIYGSVTHFAGNATTSLHFNQQLIL*KKWRHS*RKIQLRLSPS*LKTMCTLQRG* 209

Query: 146 LRSSKLQGLTSTCSRLVGCPRTVAIGLLLMT*S*TINDLSHSPRDLPRKQLKAFLSRGNT 205
           L  S++    S       C + V IG L       I DL  S     RKQ K  L  G+T
Sbjct: 210 LMCSQVLDWISIGFLCPRCRKRVTIGPL*RRWFKQITDLLFSLPMPQRKQGKE*LISGST 389

Query: 206 S*KTNMEMKVCSRVLVRIEMNRHQ*TQNLGH*F**TFFILHRIVLRPVATIQLHYSAC*R 265
             K ++E+  C+RVLVR E N+  *   + H  **  F   ++ L    +IQLH      
Sbjct: 390 WLKMSLEILECNRVLVRTEKNQRH*ILKVIHFS**ITFRHIQLKLTLAKSIQLHL----- 554

Query: 266 LAMKRPATDGQ-----ISLLLIII*GVMVEEYHKLLMQQMVVSLVDVTALLIARQMVRLV 320
           L    P T  Q        LLI  *GVM   +  L ++ M +  V V       Q  R V
Sbjct: 555 LRWSIPVTKLQGI*CPTL*LLIFT*GVMEVVFLILWIK*MAIHCVGVA----LSQPARWV 722

Query: 321 HVMSLQ--FLHLHLLQKLHLME 340
           + + L   FL+L  +Q L L+E
Sbjct: 723 YPLGLARIFLYLVRVQ*LILLE 788


>TC232369 weakly similar to UP|Q948Y6 (Q948Y6) VMP4 protein, partial (3%)
          Length = 1311

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 319 LVHVMSLQFLHLHLLQKLHLMETRNLLIIV 348
           L+    LQ LHL +L   HL+E RNLL+++
Sbjct: 557 LLQTQILQLLHLFVLVLKHLLELRNLLLLL 468


>CO985160 
          Length = 777

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 21/78 (26%), Positives = 45/78 (56%)
 Frame = +3

Query: 279 LLLIII*GVMVEEYHKLLMQQMVVSLVDVTALLIARQMVRLVHVMSLQFLHLHLLQKLHL 338
           LLL+ +  +++ +  KLL+  +++ L+ +  LL+    +R + ++ LQ   L LL    L
Sbjct: 411 LLLLDLRKLLLLQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLLLLLQLRKLLLL----L 578

Query: 339 METRNLLIIVKQAMHIVV 356
           +E R LL+++ Q   +++
Sbjct: 579 LELRKLLLLLLQLRKLLL 632


>BI316991 weakly similar to GP|28144147|gb| PDZ-LIM protein cypher3s {Mus
           musculus}, partial (5%)
          Length = 375

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -3

Query: 317 VRLVHVMSLQFLHLHLLQKLHLMETRNLLIIVKQAMH 353
           VR +HV++L+ LH+  ++ LH + +R L ++  + +H
Sbjct: 352 VRGLHVLALRGLHVLTIRGLHALTSRGLHVLALRGLH 242



 Score = 28.1 bits (61), Expect = 6.8
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -1

Query: 317 VRLVHVMSLQFLHLHLLQKLHLMETRNLLIIVKQAMH 353
           +R +HV++L+ LH+   + LH + +R L ++  + +H
Sbjct: 210 IRGLHVLALRGLHVLTTRGLHALTSRGL*VLALRGLH 100


>TC222469 
          Length = 438

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/39 (30%), Positives = 26/39 (65%)
 Frame = +1

Query: 317 VRLVHVMSLQFLHLHLLQKLHLMETRNLLIIVKQAMHIV 355
           VR +HV++L+ LH+  ++ LH++  R L  +  + +H++
Sbjct: 172 VRGLHVLALRGLHVLAIRGLHVLTFRGLHALAIRGLHVL 288


>TC216000 similar to UP|O22253 (O22253) Photolyase/blue-light receptor
           (Photolyase/blue light photoreceptor PHR2), partial
           (84%)
          Length = 1641

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 15/47 (31%), Positives = 28/47 (58%), Gaps = 3/47 (6%)
 Frame = -3

Query: 303 SLVDVTALLIARQMVRLVHVMSLQFLHLHLL---QKLHLMETRNLLI 346
           S++    L + RQ+V ++   S + LHLH+L   ++LHL+    L++
Sbjct: 715 SVIGRHVLQLKRQIVHVIQRASPEVLHLHILLLHRRLHLLLRLRLVV 575


>BI969815 weakly similar to GP|9757860|dbj exonuclease-like protein
           {Arabidopsis thaliana}, partial (20%)
          Length = 726

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 39  IHG*RHIIHLLWLVQDQPQVQLSLHL*TRMTLSLINSKM 77
           +HG RH  H + LV DQPQ  +      + TLSL  + +
Sbjct: 484 LHGHRHQEHYIDLVMDQPQNSIVAGQPYQKTLSLFQTAL 600


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.358    0.158    0.540 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,838,410
Number of Sequences: 63676
Number of extensions: 242967
Number of successful extensions: 2682
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2675
length of query: 377
length of database: 12,639,632
effective HSP length: 99
effective length of query: 278
effective length of database: 6,335,708
effective search space: 1761326824
effective search space used: 1761326824
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 60 (27.7 bits)