TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144430.7 + phase: 0 /pseudo
         (491 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE330079                                                               39  8e-04
CF922419                                                               30  2.5
TC226383 similar to UP|GS11_ARATH (Q9LMP7) Golgi SNARE 11 protei...    29  5.5
TC203254                                                               28  9.3

>BE330079 
          Length = 447

 Score = 38.5 bits (88), Expect(2) = 8e-04
 Identities = 17/39 (43%), Positives = 24/39 (60%)
 Frame = -1

Query: 1   MNTNGFGSNILILDGKNWERWSALMRSLFGAQDVSDLVQ 39
           +  NG   N+ I DGKNW++W   MR LF   DV ++V+
Sbjct: 237 IGNNGVPRNLPIQDGKNWDQWVVQMRILFRF*DVLEIVE 121



 Score = 22.3 bits (46), Expect(2) = 8e-04
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 41  LKNLLQIPLMCREQLTNK 58
           LKN + +PL  REQ T K
Sbjct: 113 LKNQVHVPLNHREQSTKK 60


>CF922419 
          Length = 804

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/54 (24%), Positives = 27/54 (49%)
 Frame = +3

Query: 17  NWERWSALMRSLFGAQDVSDLVQVLKNLLQIPLMCREQLTNKARRKIVKLCSTF 70
           +++ W++  RSL+G      L  +L  L  + ++      + A +++V L S F
Sbjct: 627 SYKSWTSSSRSLYGRSSTLSLTSILSPLKNLAMLVLSSSLSPALKRVVHLLSIF 788


>TC226383 similar to UP|GS11_ARATH (Q9LMP7) Golgi SNARE 11 protein
          (AtGOS11) (Golgi SNAP receptor complex member 1-1),
          partial (86%)
          Length = 979

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/48 (35%), Positives = 26/48 (53%)
 Frame = +2

Query: 30 GAQDVSDLVQVLKNLLQIPLMCREQLTNKARRKIVKLCSTFNKMLIIN 77
          GA D+S     LKN+ Q  L+    L+ K R++ +KL      +LI+N
Sbjct: 41 GADDLSSSPNNLKNIHQRSLLIHPSLSKKIRQENLKLSWMSR*ILIVN 184


>TC203254 
          Length = 734

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -3

Query: 277 LAILLMNVGSRKIRRLKKPILLMKVTLMQCC*WLLHV 313
           L I+++   ++ ++ L++P+L     ++QC  W LH+
Sbjct: 387 LLIIVLKFRAKFLKFLRRPVLTFAKQIIQCLQWSLHL 277


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.371    0.167    0.604 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,920,379
Number of Sequences: 63676
Number of extensions: 248170
Number of successful extensions: 3616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2020
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 1574
Number of HSP's gapped (non-prelim): 2196
length of query: 491
length of database: 12,639,632
effective HSP length: 101
effective length of query: 390
effective length of database: 6,208,356
effective search space: 2421258840
effective search space used: 2421258840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 61 (28.1 bits)