BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.8 + phase: 0 /pseudo
(106 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM891039 similar to GP|24762264|gb| NADH dehydrogenase subunit 1... 40 2e-04
TC228638 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial... 29 0.31
CO979270 28 0.89
TC205766 similar to UP|Q9MAN7 (Q9MAN7) CDS, partial (27%) 27 1.5
BI942795 similar to GP|4835765|gb| Is a member of the PF|00171 a... 27 1.5
TC213705 UP|Q7XAC5 (Q7XAC5) Embryo-specific urease , partial (12%) 26 3.4
TC216861 similar to UP|Q8RWE2 (Q8RWE2) Trehalose-6-phosphate pho... 26 3.4
AI736859 similar to GP|1079736|gb|A ribulose 1 5-bisphosphate ca... 25 4.4
TC218812 similar to UP|Q9FFF3 (Q9FFF3) Low density lipoprotein B... 25 4.4
TC214173 similar to UP|Q708X4 (Q708X4) Pectin methylesterase (F... 25 4.4
TC222425 weakly similar to UP|Q9FI58 (Q9FI58) Arabidopsis thalia... 25 5.8
TC228545 similar to UP|Q8VZZ7 (Q8VZZ7) Ribosomal protein L2, par... 25 5.8
TC222363 25 5.8
TC211935 similar to GB|AAN31116.1|23506209|AY149962 At3g06130/F2... 25 5.8
BE555235 25 7.6
BG352727 25 7.6
BU577401 homologue to EGAD|139142|14 ppc2 protein {Mesembryanthe... 25 7.6
TC212621 25 7.6
AI460895 similar to GP|3005587|gb|A Ser/Arg-related nuclear matr... 25 7.6
TC222478 weakly similar to UP|Q9SA38 (Q9SA38) F3O9.19 protein (A... 24 9.9
>BM891039 similar to GP|24762264|gb| NADH dehydrogenase subunit 1 {Thrips
imaginis}, partial (26%)
Length = 427
Score = 39.7 bits (91), Expect = 2e-04
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 21 ISRLAETNRAPFDLPEAEAESVAGYNVEYAR 51
IS AE NR PFD E E+E V+G+N EY R
Sbjct: 320 ISCTAELNRTPFDFAEGESELVSGFNTEYRR 412
>TC228638 similar to UP|Q8VZD4 (Q8VZD4) At1g28320/F3H9_2, partial (9%)
Length = 696
Score = 29.3 bits (64), Expect = 0.31
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 11 PLFPVLVMFFISRLAETNRAPFDL 34
PLFP L M F+S + NR PF L
Sbjct: 407 PLFPALKMSFLSAINLANREPFSL 336
>CO979270
Length = 837
Score = 27.7 bits (60), Expect = 0.89
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 50 ARDAILNSPLLAEANVPGSRGLILTETRGACWG 82
A A +++ L E +VPGS+ L+ + RG WG
Sbjct: 228 AAGACVHTQKLVEMDVPGSKKLLESLGRGKIWG 130
>TC205766 similar to UP|Q9MAN7 (Q9MAN7) CDS, partial (27%)
Length = 2101
Score = 26.9 bits (58), Expect = 1.5
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 20 FISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPL---LAEANVPGSRGLILT 74
F++ + ++ PF+ P + +S +NV +D ILNS L LA V S IL+
Sbjct: 886 FLNSVVNWDQVPFEDPNCQQQSYPLFNV---KDNILNSDLDSELANMTVSNSSYTILS 1050
>BI942795 similar to GP|4835765|gb| Is a member of the PF|00171 aldehyde
dehydrogenase family. ESTs gb|T21534 gb|N65241 and
gb|, partial (27%)
Length = 424
Score = 26.9 bits (58), Expect = 1.5
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = +1
Query: 79 ACWGTLHSSFETNECRVGG 97
+C GTLHSS+ T CR G
Sbjct: 211 SCSGTLHSSWNTTGCRERG 267
>TC213705 UP|Q7XAC5 (Q7XAC5) Embryo-specific urease , partial (12%)
Length = 945
Score = 25.8 bits (55), Expect = 3.4
Identities = 13/45 (28%), Positives = 19/45 (41%)
Frame = +3
Query: 57 SPLLAEANVPGSRGLILTETRGACWGTLHSSFETNECRVGGFCLV 101
S L++ N+ G + TR W +HS E CR C +
Sbjct: 570 STKLSKHNIVGEDEAYVWNTRQGWWCFIHSFCEQGSCRPESTCSI 704
>TC216861 similar to UP|Q8RWE2 (Q8RWE2) Trehalose-6-phosphate phosphatase
(At5g51460), partial (54%)
Length = 1238
Score = 25.8 bits (55), Expect = 3.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 8 SGIPLFPVLVMFFISRLAETNRAP 31
SGIPLF +++ F +SR + N+ P
Sbjct: 27 SGIPLF*LVLRFRLSRYLDENKNP 98
>AI736859 similar to GP|1079736|gb|A ribulose 1 5-bisphosphate carboxylase
small subunit precursor {Glycine soja}, partial (26%)
Length = 370
Score = 25.4 bits (54), Expect = 4.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 12 LFPVLVMFFISRLAE 26
L P++VMFFIS+ AE
Sbjct: 20 LLPIIVMFFISKRAE 64
>TC218812 similar to UP|Q9FFF3 (Q9FFF3) Low density lipoprotein B-like protein,
partial (30%)
Length = 1307
Score = 25.4 bits (54), Expect = 4.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 72 ILTETRGACWGTLHSSFETNECR 94
+L +RG CW T F++ CR
Sbjct: 1231 LLCPSRGQCWSTDGEVFKSGNCR 1163
>TC214173 similar to UP|Q708X4 (Q708X4) Pectin methylesterase (Fragment) ,
partial (29%)
Length = 695
Score = 25.4 bits (54), Expect = 4.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 12 LFPVLVMFFISRLAE 26
L P++VMFFIS+ AE
Sbjct: 400 LLPIIVMFFISKRAE 444
>TC222425 weakly similar to UP|Q9FI58 (Q9FI58) Arabidopsis thaliana genomic
DNA, chromosome 5, TAC clone:K3K7, partial (23%)
Length = 410
Score = 25.0 bits (53), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 50 ARDAILNSPLLAEANVPGSRGLILTETRGACWG 82
A A + + L E +VPGS+ + + RG WG
Sbjct: 284 AAGACVYTQKLVEMDVPGSKKFLESLGRGKIWG 382
>TC228545 similar to UP|Q8VZZ7 (Q8VZZ7) Ribosomal protein L2, partial (73%)
Length = 959
Score = 25.0 bits (53), Expect = 5.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 38 EAESVAGYNVEYAR 51
EA+ V GYN+ YAR
Sbjct: 791 EAQKVVGYNIHYAR 832
>TC222363
Length = 448
Score = 25.0 bits (53), Expect = 5.8
Identities = 11/27 (40%), Positives = 13/27 (47%)
Frame = +1
Query: 72 ILTETRGACWGTLHSSFETNECRVGGF 98
+LT RG CWG F +GGF
Sbjct: 211 VLTLRRGCCWGFEDGYFHFY*LELGGF 291
>TC211935 similar to GB|AAN31116.1|23506209|AY149962 At3g06130/F28L1_7
{Arabidopsis thaliana;} , partial (15%)
Length = 556
Score = 25.0 bits (53), Expect = 5.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 11 PLFPVLVMFFISRLAETNRAPFDLP 35
PL P+L F +S+L + PF +P
Sbjct: 234 PL*PILCFFSLSQLLRSTTTPFCIP 308
>BE555235
Length = 393
Score = 24.6 bits (52), Expect = 7.6
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +2
Query: 4 KQIWSGIPLFPVLVMFFISRLAET 27
+Q + G PLFPVL+M ++ T
Sbjct: 290 EQTYLGSPLFPVLLMLYMQAQLST 361
>BG352727
Length = 404
Score = 24.6 bits (52), Expect = 7.6
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = +1
Query: 49 YARDAILNSPLLAEANVPG 67
Y R AILNSPL + +PG
Sbjct: 244 YQRLAILNSPLTDSSPIPG 300
>BU577401 homologue to EGAD|139142|14 ppc2 protein {Mesembryanthemum
crystallinum}, partial (13%)
Length = 366
Score = 24.6 bits (52), Expect = 7.6
Identities = 17/64 (26%), Positives = 24/64 (36%), Gaps = 8/64 (12%)
Frame = +1
Query: 6 IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAG--------YNVEYARDAILNS 57
IW GIP F V + + R P++ P + S G E RD S
Sbjct: 28 IWKGIPKFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCFXS 207
Query: 58 PLLA 61
++A
Sbjct: 208RMMA 219
>TC212621
Length = 431
Score = 24.6 bits (52), Expect = 7.6
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 19 FFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVP 66
FF + +A T + + E++AG+ V N P L + N+P
Sbjct: 13 FFATDVASTAPVRSEYKGYKLENIAGFVVSKEEQKEKNKPFLFDLNLP 156
>AI460895 similar to GP|3005587|gb|A Ser/Arg-related nuclear matrix protein
{Homo sapiens}, partial (3%)
Length = 412
Score = 24.6 bits (52), Expect = 7.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 59 LLAEANVPGSRGLILTETRGACWGT 83
L+ + GS G + RG CWG+
Sbjct: 406 LMGSKGLDGSMGWKTIQVRGRCWGS 332
>TC222478 weakly similar to UP|Q9SA38 (Q9SA38) F3O9.19 protein
(At1g16390/F3O9_19), partial (26%)
Length = 707
Score = 24.3 bits (51), Expect = 9.9
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -3
Query: 72 ILTETR-GACWGTLHSSF 88
ILT+T G CW T+ SSF
Sbjct: 576 ILTQTLFGCCWSTMMSSF 523
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,803,740
Number of Sequences: 63676
Number of extensions: 50204
Number of successful extensions: 300
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of query: 106
length of database: 12,639,632
effective HSP length: 82
effective length of query: 24
effective length of database: 7,418,200
effective search space: 178036800
effective search space used: 178036800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC144406.8