TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144406.5 - phase: 0 
         (47 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC226165 GAI1 [Glycine max]                                            32  0.071
TC226166 similar to UP|O23724 (O23724) GAI protein, partial (70%)      31  0.16
BF009765 similar to PIR|E96661|E96 GMP synthase  61700-64653 [im...    27  1.8
TC215444 homologue to UP|Q39013 (Q39013) ATAF1 protein, partial ...    27  2.3
BE057686                                                               27  3.0
TC214770                                                               27  3.0
BI427478 homologue to GP|24078517|gb friend of GATA-1 {Homo sapi...    25  6.7
TC209144 similar to UP|Q8LBT7 (Q8LBT7) Rev interacting protein m...    25  6.7
TC231825                                                               25  6.7

>TC226165 GAI1 [Glycine max]
          Length = 1313

 Score = 32.0 bits (71), Expect = 0.071
 Identities = 24/61 (39%), Positives = 27/61 (43%), Gaps = 17/61 (27%)
 Frame = -3

Query: 2    GGRSRC-------PGRTRLLLTLEDHWKRP----------GTRACRERSTPGGRASTVSP 44
            GGR  C       P RTRLL   +  W+R           GTR  R  S P  RAST+ P
Sbjct: 1176 GGRGACETRRRSSPPRTRLLG--DPAWRRRDRRGCLRRSRGTRTARGSSPPAARASTLPP 1003

Query: 45   G 45
            G
Sbjct: 1002 G 1000


>TC226166 similar to UP|O23724 (O23724) GAI protein, partial (70%)
          Length = 1613

 Score = 30.8 bits (68), Expect = 0.16
 Identities = 23/61 (37%), Positives = 26/61 (41%), Gaps = 17/61 (27%)
 Frame = -2

Query: 2   GGRSRC-------PGRTRLLLTLEDHWKRPGTRACRERS----------TPGGRASTVSP 44
           GGR  C       P RTRLL   +  W+R   R C  RS           P  RAST+ P
Sbjct: 721 GGRGACETRRRSSPPRTRLLG--DRAWRRRDRRGCSRRSHGTRTAR*SPPPAARASTLPP 548

Query: 45  G 45
           G
Sbjct: 547 G 545


>BF009765 similar to PIR|E96661|E96 GMP synthase  61700-64653 [imported] -
           Arabidopsis thaliana, partial (20%)
          Length = 412

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 2   GGRSRCPGRTRLLLTLEDHWKRP--GTRACRERSTPGGRA 39
           GGRSRC GR R       HW  P  G+R  R  S   GR+
Sbjct: 275 GGRSRCRGR*R-------HWNGPTGGSRRGRRGSPGCGRS 177


>TC215444 homologue to UP|Q39013 (Q39013) ATAF1 protein, partial (59%)
          Length = 1198

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 16/42 (38%), Positives = 21/42 (49%)
 Frame = +1

Query: 5   SRCPGRTRLLLTLEDHWKRPGTRACRERSTPGGRASTVSPGH 46
           +RCPG TR        W R   RA R R++  G A+T +  H
Sbjct: 415 TRCPGCTRRTRAAPSRWCRRSLRA-RCRASRRGAATTTTSLH 537


>BE057686 
          Length = 421

 Score = 26.6 bits (57), Expect = 3.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 12  RLLLTLEDHWKRPGTRACRERSTPGGRASTVSPGH 46
           RLLL    H +RP      ER+ P   AS+    H
Sbjct: 123 RLLLRQAQHQRRPRRARSNERTPPSSHASSARCSH 227


>TC214770 
          Length = 978

 Score = 26.6 bits (57), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -1

Query: 24  PGTRACRERSTPGGRASTVSPGH 46
           PGTR+ R R+ PG + +T   GH
Sbjct: 264 PGTRSRRWRA*PGAKVTTTRHGH 196


>BI427478 homologue to GP|24078517|gb friend of GATA-1 {Homo sapiens},
          partial (1%)
          Length = 422

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
 Frame = +2

Query: 4  RSRCPGRTRLLLTLEDHWKRPGTRAC-RERSTPGGRASTV 42
          + R  GRTR   T    WK P +  C + ++TP    +T+
Sbjct: 50 KRRRSGRTRSTCTSSTPWKPPSSAQCSKTKATPSPPRATL 169


>TC209144 similar to UP|Q8LBT7 (Q8LBT7) Rev interacting protein mis3-like,
           partial (45%)
          Length = 646

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 21  WKRPGTRACRERSTPG 36
           W+R   RACR RST G
Sbjct: 276 WRRS*LRACRRRSTKG 229


>TC231825 
          Length = 700

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
 Frame = +3

Query: 4   RSRCPGRTRLLLTLEDHWKRPGTRAC-RERSTPGGRASTV 42
           + R  GRTR   T    WK P +  C + ++TP    +T+
Sbjct: 135 KRRRSGRTRSTCTSSTPWKPPSSAQCSKTKATPSPPRATL 254


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.135    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,677,321
Number of Sequences: 63676
Number of extensions: 28514
Number of successful extensions: 206
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of query: 47
length of database: 12,639,632
effective HSP length: 23
effective length of query: 24
effective length of database: 11,175,084
effective search space: 268202016
effective search space used: 268202016
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)