BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.4 - phase: 1 /pseudo
(322 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224237 similar to UP|Q8HDK9 (Q8HDK9) Ribosomal protein S3, par... 37 0.016
TC228226 similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial (12%) 30 1.1
TC230749 similar to UP|Q9LYV6 (Q9LYV6) ABA-responsive protein-li... 30 1.9
TC224951 similar to GB|CAA39819.1|20900|PSSODII Cu/Zn superoxide... 29 2.5
TC219608 homologue to UP|Q86L95 (Q86L95) Wx2, partial (6%) 29 2.5
TC224926 homologue to UP|Q41119 (Q41119) Cyclophilin , complete 29 2.5
TC231404 similar to UP|Q9SK61 (Q9SK61) Expressed protein, partia... 29 2.5
TC220614 similar to UP|Q6R3R1 (Q6R3R1) CONSTANS-like protein CO2... 29 3.3
TC207501 similar to GB|AAN38679.1|23507751|BT000842 At4g34190/F2... 29 3.3
BM308784 28 4.3
BE473401 28 5.6
TC224492 similar to UP|Q9VJD4 (Q9VJD4) CG5094-PA (LD24721p), par... 28 7.3
TC216429 similar to UP|Q93XA7 (Q93XA7) NAC domain protein NAC1, ... 28 7.3
CK605837 28 7.3
BM086425 27 9.5
>TC224237 similar to UP|Q8HDK9 (Q8HDK9) Ribosomal protein S3, partial (51%)
Length = 800
Score = 36.6 bits (83), Expect = 0.016
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +3
Query: 287 FFVESSTSEKKCLAEAKK 304
FFVES TSEKKCLAEAKK
Sbjct: 27 FFVESLTSEKKCLAEAKK 80
>TC228226 similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial (12%)
Length = 558
Score = 30.4 bits (67), Expect = 1.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 77 RRPRRLKRRDKSRPGKEKGRWWAFGK-----VGPIGCLHSSNKKDEERNEVRGRRAG 128
RRPRRL+RR + R G+ GR + G +GP+G + + D + R+G
Sbjct: 91 RRPRRLRRRREVRLGRHSGRIRSHGGKPGPWLGPVGPVRFRFEPDRVKAGTLDGRSG 261
>TC230749 similar to UP|Q9LYV6 (Q9LYV6) ABA-responsive protein-like
(At5g13200), partial (58%)
Length = 972
Score = 29.6 bits (65), Expect = 1.9
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 253 LNHFVAPGVAEPSTMG 268
++HFVAPGVA PST G
Sbjct: 759 ISHFVAPGVAVPSTSG 806
>TC224951 similar to GB|CAA39819.1|20900|PSSODII Cu/Zn superoxide dismutase
II {Pisum sativum;} , partial (68%)
Length = 901
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Frame = -1
Query: 63 IHFPKRTFIHFFLPRRPRRLKRRDKSRPGKEKGRWWAFGKVGP-------IGCLHSSNKK 115
+H P R RR L+R+ + R +E+ W G I LH ++
Sbjct: 352 LHVPGRRLHRRKRHRRRVDLRRQVRRRELREEAHWSRHPLHGERRSRNQRISVLHLHDED 173
Query: 116 DEERNEVRGRRAGKRVESIRLDDREKQNEIR 146
R + R R G+R + R DRE + ++R
Sbjct: 172 GVARRKARRVRTGRRGDGRRQGDREGRIQLR 80
>TC219608 homologue to UP|Q86L95 (Q86L95) Wx2, partial (6%)
Length = 1193
Score = 29.3 bits (64), Expect = 2.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 272 AQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKVAIPSVVCKPPLHP 318
+Q SL + + FF +S T+EKK + + +K S V PP P
Sbjct: 566 SQCSSLKMLLEEDVDFFFKSVTTEKKTVCKNQKGIPRSYVLNPPFSP 706
>TC224926 homologue to UP|Q41119 (Q41119) Cyclophilin , complete
Length = 1045
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Frame = +2
Query: 63 IHFPKRTFIHFFLPRRPRRLKRRDKSRPGKEKGRWWAFGKVGP-------IGCLHSSNKK 115
+H P R RR L+R+ + R +E+ W G I LH ++
Sbjct: 251 LHVPGRRLHRRKRHRRRVDLRRQVRRRELREEAHWSRHPLHGERRSRNQRISVLHLHDED 430
Query: 116 DEERNEVRGRRAGKRVESIRLDDREKQNEIR 146
R + R R G+R + R DRE + ++R
Sbjct: 431 GVARRKARRVRTGRRGDGRRQGDREGRIQLR 523
>TC231404 similar to UP|Q9SK61 (Q9SK61) Expressed protein, partial (36%)
Length = 505
Score = 29.3 bits (64), Expect = 2.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 119 RNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKSL 172
R RGR G+ + + +RE + +IR W + K+ H+ P + LS+S+
Sbjct: 6 RGRTRGRTRGREQ*FVGVREREGELKIRFWGEAKRS---HETKPFELRQLSESM 158
>TC220614 similar to UP|Q6R3R1 (Q6R3R1) CONSTANS-like protein CO2, partial
(33%)
Length = 640
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Frame = -3
Query: 74 FLPRRPRRLKRRDKSRPGKEKGRWWAFGKVG-------PIGCLHSSNKKDEERNEVRGRR 126
F RRP + +RR + R + + RW +G G GC ++ R RGR
Sbjct: 461 FRHRRPSQHRRRCRCRCCRGRRRWGGWGHGGGGWRGGWRRGCRRRRRRRGRRRQPCRGRP 282
Query: 127 AGK 129
G+
Sbjct: 281 QGR 273
>TC207501 similar to GB|AAN38679.1|23507751|BT000842 At4g34190/F28A23_50
{Arabidopsis thaliana;} , partial (52%)
Length = 724
Score = 28.9 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 18/39 (45%)
Frame = +3
Query: 191 LIENYDSFRKTKFFKLFFPRSDGPTGHLFKRTLPAVRPS 229
L+E Y S + +LF P PT H R A RPS
Sbjct: 99 LVEAYASLSISSVARLFTPPKCSPTAHFPHRNFVATRPS 215
>BM308784
Length = 408
Score = 28.5 bits (62), Expect = 4.3
Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 2/44 (4%)
Frame = -2
Query: 67 KRTFIHFFLPRRP--RRLKRRDKSRPGKEKGRWWAFGKVGPIGC 108
++T HF +PRRP RRL+RR S + + A G V P+ C
Sbjct: 404 RQTVYHFLVPRRPPRRRLRRRRLSVGAENRTLRHAVG-VSPLLC 276
>BE473401
Length = 465
Score = 28.1 bits (61), Expect = 5.6
Identities = 16/45 (35%), Positives = 18/45 (39%), Gaps = 5/45 (11%)
Frame = -3
Query: 76 PRRPRRLKRRDKSRPGK-----EKGRWWAFGKVGPIGCLHSSNKK 115
PR PR RR K R + RWW G P C H K+
Sbjct: 301 PRYPRPAARRGKRRGIRG*WRGRASRWWIGGCDAPEECCHRRRKR 167
>TC224492 similar to UP|Q9VJD4 (Q9VJD4) CG5094-PA (LD24721p), partial (6%)
Length = 525
Score = 27.7 bits (60), Expect = 7.3
Identities = 20/65 (30%), Positives = 29/65 (43%)
Frame = +3
Query: 77 RRPRRLKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRL 136
RR RRL+ R + R G+ + R W + + + E E G RAG R S +
Sbjct: 201 RRFRRLRNRQRHRSGR*RRRQWGRHPG------RTESHRTESYREADGARAGTRCSSEQR 362
Query: 137 DDREK 141
RE+
Sbjct: 363 IIREQ 377
>TC216429 similar to UP|Q93XA7 (Q93XA7) NAC domain protein NAC1, partial
(57%)
Length = 792
Score = 27.7 bits (60), Expect = 7.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 199 RKTKFFKLFFPRSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQ 244
R+ KF +LF D P L S Y+ M++FF +K Q
Sbjct: 469 RRRKFRELFI*SGDAPRVELLM*DFST*TLSSTYATMKFFFLKKKQ 606
>CK605837
Length = 498
Score = 27.7 bits (60), Expect = 7.3
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +2
Query: 77 RRPRRLKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRL 136
++ ++ K++ K + K+K + K P G E++ E+RG R GK+ E +
Sbjct: 107 KKKKKKKKKKKKKKKKKKKKKKKKKKRSPGG-------NPEKKKEIRGPRGGKKREKPQR 265
Query: 137 DDREKQNEIRIWPKKK 152
R K I+ P+K+
Sbjct: 266 GGR-KSGRIQKGPQKR 310
>BM086425
Length = 428
Score = 27.3 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 59 RCILIHFPKRTFIHFFLPRRPRRLKR 84
+C+ P+R F+H + RR RR KR
Sbjct: 174 KCLQHQRPRRRFLHHLVRRRARRKKR 97
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,789,603
Number of Sequences: 63676
Number of extensions: 236284
Number of successful extensions: 1425
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of query: 322
length of database: 12,639,632
effective HSP length: 97
effective length of query: 225
effective length of database: 6,463,060
effective search space: 1454188500
effective search space used: 1454188500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144406.4